Vsat114297.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010001813.1:1550422-1560153[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.48 50 7.3 0.0 14 29 33 48 29 55 0.92 2 5 0.34 35 7.7 0.0 14 29 104 119 91 126 0.90 3 5 0.006 0.62 13.4 0.0 3 29 179 205 178 212 0.90 4 5 0.34 35 7.7 0.0 14 29 261 276 248 283 0.90 5 5 0.006 0.62 13.4 0.0 3 29 336 362 335 369 0.90
Sequence Information
- Coding Sequence
- ATGCTAGAATTGAATTTAGATCATCAaccaataaaaaaacatttatcaaCAGCTGTTAGAATTAGCAGTAATCTTAACGAAACTACGAAGTATCCGGAAGGAGAATTATCATGGACGAAAGCTTCCGTAAGATACAACGTTCCTTTACAGGCAATAGCCAAACAATGTCATGAGAAGGCTACAGGGTTTACCAGTGAAGAACAGGAACCATTCACTTCATGCCTTAAAACTTTGAGTGGTTCGGGACTTCCACTTACTTCTGAACATCTGAGACATGTCATTCCATCATACTTGGATCGTCAGTATCCGGAAGGAGAATTATCATGGACGAAAGCTTCCGTAAGATACAACGTTCCTTTACAGGCAATAGCCAAACAATGTCATGAGAAGGCTACAGGGTTTACCAGTGAAGAACAGGAACCATTCACTTCATGCCTTAAAACTTTGAGTGGTTCGGGACTTCCACTTACTTCTGAACATCTGAGACATGTCATTCTATCATACTTGGATCGTCAGCGGGCGTCGCTATGCAAGGAAAGTTTAGAAGAGTTCCTCAGTAGTATCCGGAAGGGAGAATTATCATGGACGAAAGCTTCCGTAAGATACAACGTTCCTTTACAGGCAATAGCCAAACAATGTCATGAGAAGGCTACAGGGTTTACCAGTGAAGAACAGGAACCATTCACTTCATGCCTTAAAACTTTGAGTGGTTCGGGACTTCCACTTACTTCTGAACATCTGAGACATGTCATTCCATCATACTTGGATCGTCAGTATCCGGAAGGAGAATTATCATGGACGAAAGCTTCCGTAAGATACAACGTTCCTTTACAGGCAATAGCCAAACAATGTCATGAGAAGGCTACAGGGTTTACCAGTGAAGAACAGGAACCATTCACTTCATGCCTTAAAACTTTGAGTGGTTCGGGACTTCCACTTACTTCTGAACATCTGAGACATGTCATTCCATCATACTTGGATCGTCAGCGGGCGTCGCTATGCAAGGAAAGTTTAGAAGAGTTCCTCAGTAGTATCCGGAAGGGAGAATTATCATGGACGAAAGCTTCCGTAAGATACAACGTTCCTTTACAGGCAATAGCCAAACAATGTCATGAGAAGGCTACAGGGTTTACCAGTGAAGAACAGGAACCATTCACTTCATGCCTTAAAACTTTGAGTGGTTCGGGACTTCCACTTACTTCTGAACATCTGAGACATGTTATTCCATCATACTTGGATCGTCAGGTTTTCTAA
- Protein Sequence
- MLELNLDHQPIKKHLSTAVRISSNLNETTKYPEGELSWTKASVRYNVPLQAIAKQCHEKATGFTSEEQEPFTSCLKTLSGSGLPLTSEHLRHVIPSYLDRQYPEGELSWTKASVRYNVPLQAIAKQCHEKATGFTSEEQEPFTSCLKTLSGSGLPLTSEHLRHVILSYLDRQRASLCKESLEEFLSSIRKGELSWTKASVRYNVPLQAIAKQCHEKATGFTSEEQEPFTSCLKTLSGSGLPLTSEHLRHVIPSYLDRQYPEGELSWTKASVRYNVPLQAIAKQCHEKATGFTSEEQEPFTSCLKTLSGSGLPLTSEHLRHVIPSYLDRQRASLCKESLEEFLSSIRKGELSWTKASVRYNVPLQAIAKQCHEKATGFTSEEQEPFTSCLKTLSGSGLPLTSEHLRHVIPSYLDRQVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -