Vsat029349.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010000417.1:7469492-7485202[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-10 3.7e-08 36.5 0.0 1 39 310 349 310 353 0.90 2 4 3.1e-11 3.2e-09 39.9 0.1 1 39 364 402 364 406 0.95 3 4 1.7e-15 1.8e-13 53.5 0.0 1 45 419 464 419 464 0.97 4 4 4.4 4.5e+02 4.2 0.1 1 13 471 483 471 483 0.92
Sequence Information
- Coding Sequence
- ATGGGAAATTTACAATTTCCTCGTGTAAGAATGTACTGGAATTCAGCCATTGGAATTTGTTTGGTGAAAGATAAATTGCGCAAATTGCGCCAAACCATTCATTTAGTTGACGTTACTTCACGTGAAGACGAAAATAAAGACCGTTTATGGAAGTCCCTTTTAAAAACAGCCGATCAATTGAAAATAAAAGGCCTCTGCGAGTCAGAAGATAAGGAACGTTCAACATCTCCACTCTTTATACCTAGAAGTTATTCAAGAATTTCTAAGGTATCTTCACCAATACACTACAGAAAATTAGATAGTAACAAGAGGCATAATATTCAAGACTTTCATGCAGGCAATTTCTTAGACCGAGAGGTTCAAGATGTTAAGGAATCTAATTTAGATGAACAAATTTCGGATTATGATAGTGACGCACCATTAGTCGTTGATGAGggaccaaaaagaaaaaaattaacactaCCACAATCCAAACCAATTAACATGAGTAGTCATGGCCTTTTGGCGGGACAGGCTCTATTCTCCCAGTTGTGTGATAATGACGACTTTCCACCCGAACCACCAGCTCCAAGTGCCACACCAGTGGGCCACGTTGACCTGCAAGACCACTCACCAACCCGTACGTTATTACAATCATCACATAGAACTGATTTGTCagacGTTCACATAAAATATGAAGAAATTAAAAAGGAAACCacaattaaatttgaaactttaCGGTCGTACGACCACGATTCGATGATGGATATGGACGATCCTCATATGTCCGGCCCAGATCACTCTATGGAAAGTCACGAAGATGCTGAGAGAGCGATGCACTCTATGATGGTTACACCAGAATTAATGGGGATTATTCCGGCGAGTAAAAGTAATGGACATTCGGATCACTTATCGAGTAGATCTCATGGCGGAGGACCTAAAACGTGGACGCAAGAAGATATGGAATTAGCTTTAGATGCCTTAAGAAATCACAACATGAGCCTAACCAAAGCTTCGGCGACATACGGTATTCCCTCCACTACGTTATGGCAAAGAGCGCATAGATTAGGTATAGATACACCCAAAAAAGAAGGACCTACAAAATCTTGGACTGAAGAAAATTTGAACTCCGCACTTGAAGCGTTAAGAACAGGAACGATATCGGCCAATAAAGCTAGTAAAGCATATGGAATTCCCAGCAGTACGTTGTATAAAATAGCTAGAAGGGAAGGAATAAAATTAGCTGCACCTTTTAACGCGGCTCCCACGACATGGTCCCCGGAGGACTTAGAGAAAGCACTAGAGTCTATTAGGTCTGGACAATCCTCAGTACAAAAAGCATCAACTGAGTTTGGTATACCGACAGGTACGTTGTATGGAAGATGTAAAAGGGAAGGAATTGAATTGTCGCGATCAAATCCGACGCCTTGGTCAGAAGATGCAATGGGAGAAGCGTTAGAAGCTGTAAGGTAA
- Protein Sequence
- MGNLQFPRVRMYWNSAIGICLVKDKLRKLRQTIHLVDVTSREDENKDRLWKSLLKTADQLKIKGLCESEDKERSTSPLFIPRSYSRISKVSSPIHYRKLDSNKRHNIQDFHAGNFLDREVQDVKESNLDEQISDYDSDAPLVVDEGPKRKKLTLPQSKPINMSSHGLLAGQALFSQLCDNDDFPPEPPAPSATPVGHVDLQDHSPTRTLLQSSHRTDLSDVHIKYEEIKKETTIKFETLRSYDHDSMMDMDDPHMSGPDHSMESHEDAERAMHSMMVTPELMGIIPASKSNGHSDHLSSRSHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- -
- 80% Identity
- -