Vvul004142.1
Basic Information
- Insect
- Vespula vulgaris
- Gene Symbol
- PRDM10
- Assembly
- GCA_905475345.1
- Location
- FR997668.1:12631297-12635138[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 7.4 6.7 3.5 2 23 520 541 519 541 0.95 2 11 0.13 8.1 6.6 0.5 2 23 554 575 553 575 0.92 3 11 0.0045 0.28 11.2 4.3 1 23 593 615 593 615 0.92 4 11 0.012 0.74 9.8 1.9 2 23 624 645 623 645 0.96 5 11 0.007 0.44 10.6 0.1 1 23 652 674 652 674 0.98 6 11 0.0015 0.094 12.7 4.3 1 23 681 703 681 704 0.96 7 11 0.0013 0.079 12.9 4.0 1 23 709 731 709 731 0.98 8 11 4.1e-05 0.0026 17.6 4.0 1 23 737 760 737 760 0.96 9 11 0.0013 0.084 12.8 1.7 1 23 793 816 793 816 0.97 10 11 0.0001 0.0064 16.3 2.4 1 23 838 861 838 861 0.97 11 11 0.003 0.19 11.7 3.4 3 23 899 920 899 920 0.98
Sequence Information
- Coding Sequence
- ATGGATCCTAAGGGCCCTCCTGAGGGGGGCCCTGGTGACACATTTGATATGTCCAATATTGGCAAAGTTGCTGACACTTCGGTAACTTGGCCAATTGATAGCCCAATTAATTCAGCAATATTTGAACAGCCAAAGAAGATGAATAATAATAGATTACTATTTTTGACCGTTGAATATGTTGAAGATCAATCAAGAGATTATTCCCGCTTATTTCCAACATACGAGCAGGTCTCGTTCTCACCCAGACCTTCATCTCCTCTTTCCGAATTTGAGCATCGTGTTAGTCCACTTGATCCAAATATGAGTTCTGCTGCTAGGTATTCGCCAACTCCGGTTCAATTAACTCCATCTCCTTTTCATAATTCTGTTGTTATTCTCCAAGGTCCTTCCTCCCCTTTAATATCTACAACTGAATCCAATATGAGATCAAGTATCAATTTTGTGGGTCAATTGACTCATCCGATAGATGCGCAAACTGATACTGGAACAGATTTTATTGACGAAGAAAATGAAGAAACTTTAGTTTCTAGCGTGGAAAACGAATTAATTTTAATGCAAGAGCCTAATACAGAATTGGAGCGGAGCACAACTCCACTCATGTTAACAGGTATACCAAGTGCAGATTTTACTTTAACAAGAGATTATATAGTAATGCAAGATGATCAAGTAAATGTAATGAATCCTTTGAAAAATCTTTCAATGGGAGATAATCATATCACTAATACATCTGAAAAAAAAGATATAATAAAAGAAAGTAATTCTCAGTCAATAACAGAAGCCAATTCCAGTCAGATTAATGAAATATTATCTCATGCAAATAAAAAAAAAGCTATTGATAAGAAGAATACGAAGAAGTCGAAGCAACAAATGGATGATGATAAAAATTTTTGGTGTGACGAATGTGATGGTATTTGCACCAATGAAGATGGTTGCACTTCTCATAATGTATGTACAATTGCTGATCAACCTGTACCATCACGAGCTATAGCTACACTGCCAGAATCATATCTTTCTATAAATAAATTATCTACTGTGGATATTATACCGGGTGGTTCTGAATATGGAGTTTTTGCAAAACGCAATATTCGTAGACGTACACAATTTGGTCCTATTGAAGGTATTTTATATGGTTATGATGGCACATCATTTGAAAATGTATTGCCACTACTTTATGAAGCAGAAGGAGGACAATTTTTGAAAGTTGATGTTTCAGATGAAAATACTTCAAATTGGATGCGTTTTGTGAGGCCTGCACTTACGTATAAAGAACAGAATCTAGCAATTTGTCAACAGAAGGATGGAATCGTATTTTTAACTACAAAAAATATTTTACCAAAAGAAGAACTAAGAGCAGGGCCTCATCCTGATTATGCAGCACGTAGAAATTTAATGGTATTGAAACCTGATGTGCGAGATGACAAAGAATATAACAATGGTATGAATATTTGGCCAAGGTCAGATAACAATTCTTATAATCATGCAAGACGTATGAAATTATACAGAGGCAGAAATTTGAAGGAAAAAGAGAATACAAGACAAAATAATCGTAAAGAGTGGAAATGTTGTACATGCAATTTAATCTTCAAAAAACTATCTTTATTTAAATTACATAATCTAATGCACAATCCAGAAGACAATAAAATAAATTGTCAATCAACAGTTTGTCCACAGTGTGGGTTAGAATGTCAAAAAGAATTTGAATTAATTAGTCACGTTTCACAACATGCAAGATTATCTTTGCCTAAAGGTAATAAATTGACCTCAGTGGTTGCTGCATATAAGTGCTCAATGTGTTATAAACGCTTTGCAACAAAAGTACGACTGCAGAAACATTGTTTGGTGCATGGTGCCGAGGACCAAAAGCCACTGCCATGCAGCATTTGTCTGAAAAGATTCATGAATAATTCTGCTTTATCTTGTCATTTAAAAACACATAGAGAAACTAAGCAAGTGTATGAATGTCCAATATGCAGACAACTCTTTGATCAAGGTGTGATGTTAAAAGATCATGTTGAGACACATAAAAATGGAGATCATACATTTACCTGTCCTCATTGTCAAAGAAATTTTATTAAATATTCAGTAATTCGTAAACATATAAGAGCTCATCATTGTGAAAGAAAACACAAATGTCAGTTTTGTACAAAACGTTTCCCTACAGTGGATAAATTACGAATGCATTTACTTAAACATTCTGATCACAGGGAATTTCACTGTGCTAATTGTGGAAGACAATTTAAAAGAAAAGATAAACTTAAGGAACACATGACTAGAATGCATAATTCGCAGAAAATGAATAAAGAACAAACAGTACAAAATAATCAAACAAAGAAGTTTGTGCCAAAGGTAAATCCAAATGATTACAATCGTTTCATATATAAATGCCATCAATGTCTAGTAGGATTTAAACGAAGAGGAATGCTGGTAAATCATTTGGCAAAACGACATCCAGATGTTGCTCCAGAGTCTGTTCCCGAATTAAATTTACCAATTTTGCGACAAACGAGAGATTATTATTGTCAATATTGTGAGAAGGTGTATAAAAGTAGCAGCAAACGTAAAGCTCATATCATGAAGAACCATCCAGGTGCTGCTTTACCACCAAGTAATCGTCAAAAAGAATCGGAATATTCGAGTCTGCCTAATCCAACTTTTAGTCAGACAGTTGGTAGTATTACAACTACACCTCAAGGGTGTCAATGGTGCCATAAACAATATGCTAGTAAGGCAAAACTTTTGCAACATCAACGTAAAAAACATCCAAATTTAATGGAACCAGCGGATCAAGTTCCGCGATCGAGAAGTCGTCTACTACAAAATCAAAACCAACCACTTACATTAAGTGATAGCAGTTTCATGTTATCAGATTATATTCAAACATGCGACGTAGACGGAGAATTGTTTAGGCAGAGGGTAATCAAAATATCAAATGACGTTGATCTAATAAGTAACAGTTTGGAGTTTGTTGGACAACAATTTGTACGTATGCGTGATATACGTTGA
- Protein Sequence
- MDPKGPPEGGPGDTFDMSNIGKVADTSVTWPIDSPINSAIFEQPKKMNNNRLLFLTVEYVEDQSRDYSRLFPTYEQVSFSPRPSSPLSEFEHRVSPLDPNMSSAARYSPTPVQLTPSPFHNSVVILQGPSSPLISTTESNMRSSINFVGQLTHPIDAQTDTGTDFIDEENEETLVSSVENELILMQEPNTELERSTTPLMLTGIPSADFTLTRDYIVMQDDQVNVMNPLKNLSMGDNHITNTSEKKDIIKESNSQSITEANSSQINEILSHANKKKAIDKKNTKKSKQQMDDDKNFWCDECDGICTNEDGCTSHNVCTIADQPVPSRAIATLPESYLSINKLSTVDIIPGGSEYGVFAKRNIRRRTQFGPIEGILYGYDGTSFENVLPLLYEAEGGQFLKVDVSDENTSNWMRFVRPALTYKEQNLAICQQKDGIVFLTTKNILPKEELRAGPHPDYAARRNLMVLKPDVRDDKEYNNGMNIWPRSDNNSYNHARRMKLYRGRNLKEKENTRQNNRKEWKCCTCNLIFKKLSLFKLHNLMHNPEDNKINCQSTVCPQCGLECQKEFELISHVSQHARLSLPKGNKLTSVVAAYKCSMCYKRFATKVRLQKHCLVHGAEDQKPLPCSICLKRFMNNSALSCHLKTHRETKQVYECPICRQLFDQGVMLKDHVETHKNGDHTFTCPHCQRNFIKYSVIRKHIRAHHCERKHKCQFCTKRFPTVDKLRMHLLKHSDHREFHCANCGRQFKRKDKLKEHMTRMHNSQKMNKEQTVQNNQTKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIMKNHPGAALPPSNRQKESEYSSLPNPTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHPNLMEPADQVPRSRSRLLQNQNQPLTLSDSSFMLSDYIQTCDVDGELFRQRVIKISNDVDLISNSLEFVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01512400;
- 90% Identity
- iTF_01513721;
- 80% Identity
- -