Vvul009890.1
Basic Information
- Insect
- Vespula vulgaris
- Gene Symbol
- -
- Assembly
- GCA_905475345.1
- Location
- FR997671.1:7059858-7063033[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.062 3.9 7.6 0.4 6 23 260 277 257 277 0.91 2 13 0.001 0.063 13.2 0.2 1 23 282 305 282 305 0.94 3 13 3.1e-05 0.0019 18.0 2.5 2 23 318 340 317 340 0.96 4 13 0.043 2.7 8.1 1.5 3 23 353 373 353 373 0.98 5 13 1.4e-07 8.8e-06 25.4 1.0 2 23 417 438 416 438 0.97 6 13 0.012 0.73 9.9 0.8 1 23 443 466 443 466 0.92 7 13 2.7 1.7e+02 2.4 0.8 2 23 544 565 544 565 0.95 8 13 0.00013 0.0084 16.0 2.6 1 23 574 596 574 596 0.95 9 13 1.3e-05 0.00079 19.2 0.8 1 23 605 627 605 627 0.98 10 13 0.065 4.1 7.5 2.7 1 21 633 653 633 654 0.95 11 13 3.1e-05 0.0019 18.0 1.4 1 23 680 702 680 702 0.99 12 13 0.14 8.7 6.5 0.0 1 23 766 789 766 789 0.97 13 13 5.4e-07 3.4e-05 23.5 5.9 1 23 794 817 794 817 0.98
Sequence Information
- Coding Sequence
- ATGGCTGTGGTTAACAAGTGGGAGAATGCATGTAGATTGTGTTCAGAGGAGAAAATCGAGATGTTGCCAATATTTGGCAATGAAGGAGTGCAACGCAAAGTGGCGCAAAAATTACGAGCTTGTTTACCAGTTTTAGTATATAAAACAGATCCACTGCCTAAACAAATTTGTCAGTTTTGTGCAGCACGTTTGGATGATATTTATGAGTTTAGAGAATATTGTCTTAATGTTTACAAAAGTATGCATGTAAAGTTGTTGACTTATAAGGATGTTGAATCTGTACAGATATTTTTTGAAGCTATGAAAAATTCTCCTGATCCTTGCCAGGCACAACTCTGCACAGAAAAAGTTAGAGCTCCACCGCCATTAGTACCATTACCATCGTTACTTCCTCTTGAAAGTTCTTCGATGCCAACTGAGATTAATCGAGAACATCAATCTAACTGTTGTATTGAGACATTGAGTGAACTGCCATGTGAAGTGGAAATTGAAGAAGTAAATTCAGAAACATTTCTTGGAGATGAAACATGTGAAAGTACGGATTCAAAGACAATATCTGAGAATGAATTCTATATGGCAACAGATAAACAAACTGGTATTAATATTCTTGAACATATGGAGGATGAAAGTGAGTTTTCTAAGGAAGAAATTGGTATGAAAAAAGAAGAAAAACGAACTAGTATTCTAGAACAAGTTTTGACAGGAAGTTTAACTATGAATGATCGTAAGGAACTAAAAGGTAGAGAAAATTTAACATCAAAATGGTGGTGTGCGCCTTGTAACAGTTATTACAAAACGAGAGAGAGCTTGATAAAACACATGCAACTGCATTGTCCACGTAAATATACATGTAGAAAATGCCCTATGTCTTTTGAATCAGTTGAAGATTTGGCTAAACATGAAGGTACTAATCATTTGAAAGTTACATTAGATTTTGATGAAATAGTAAAAGAGTGTCATCAGTGTGATCGCAAATTTGTCAGTTGGGAAATGTTAAAGCAGCATAGAATGCGTGATCATTTAGGTGAATCTATCGCAATAGGAATGAATACATGGTGCTCCCTTTGTAATAGATTTTTCCCCACTATAGAAGCTTATCATAGCCATCAGCAATTGCATCAAAATAATAACTATGTAATGGCACAAACACAACTTTCTATGCAGTCTGGTAATCTCTCTATAATTGGTCTTGGAGATTCTTCACGAGAGATTAAGAAGGAACATTCTTTTGAAAATACTAAATCACTTACTTGTCCTACTTGTGGAAAAGTATGCACACAACAAAGTGCATTGTCAAATCATATGCGTATTCACGAACCTAAAAGACATAAATGTGATGTTTGCGGTCGATCATTCGGATTATTTATACGTTTAGCATCACATAGAATGAGTGAACATAATCAACAGCCTTCTATGTCTCCTGTTATGGCATGCGTTGAGCAGGAAGAAGCTTTAAATGCTGCACGAGAAGCACGAGAGGCTAGAGAAGCTTGTACTCGTGGAGGAAGGATCAGAACATACTCAGAGGCATTAGAAAGAGATAATATGTTGAAAAGTGTTGAACCTTTAGCAAAACGAAATGCTTCAATACATTCATTACAAACTAGTGGAATAAGTAAGAATGTTGCACGCTGTGGTATTTGCCTACAATGGTTTGATGATCATACAACAATGTTGATACATTTGCAAACTCATTCAGATTTTTATACATGTAAAAATTTCACTTGTCATATATGTAAAATATCTTTTAAAGAAAAATGGCAACTTTTCAGACATGAGGTGTCGCATAAACGTATCGATGCATCATCTTCCTACATATGTAATGTTTGCAATAAAACATTTTTAGACAAAAGTTTACTCAAAGCACATGAAAAGACACATACTGTGGATAAAACGTACCACTGTTCAAAATGCAATAAACTTTTTTTCAAAGAAGTTTCATTATTGGCCCATCAATGTGCAGGAGAACCATTATTTCGGAAAAGGGATATAGCTTCGAAATCAACACAAAAATCAATATTACAAAATACCAAAAGATATAGGTGCTCTAAGTGTAACGCATCTTTTAATAATCCACAATCAAAGAATTCTCATATGAGAGTTCATACAGAGAGTATTAATGCAGCAGTACGACAAATGGAAATAAAAGAAGAGCCAGAAAATGATATGATGCCAAAATTAAAACCAGAAACGTCATTAGAATATATCGTGTCTCCAATTGAACCAAAAGTTGAGATCAACGAAGGAAGTACACCACCTCCGATTAAGAGAACTCTCATCAGAACAGCTGGAGGATATCGTTGTGGCGTTTGCCAATCTCCATTTGTTTTAAGAGAATTAGCAGTCGCACATTTGAGATCTGCACATCCTGTGATGCCATATCAGTGTCCTTATTGTAAAAAACGATTTACAACTCAATATACATTTACGCATCATATTAAGACCGATCATCCTGACGAACCAGAAAAGTAA
- Protein Sequence
- MAVVNKWENACRLCSEEKIEMLPIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDIYEFREYCLNVYKSMHVKLLTYKDVESVQIFFEAMKNSPDPCQAQLCTEKVRAPPPLVPLPSLLPLESSSMPTEINREHQSNCCIETLSELPCEVEIEEVNSETFLGDETCESTDSKTISENEFYMATDKQTGINILEHMEDESEFSKEEIGMKKEEKRTSILEQVLTGSLTMNDRKELKGRENLTSKWWCAPCNSYYKTRESLIKHMQLHCPRKYTCRKCPMSFESVEDLAKHEGTNHLKVTLDFDEIVKECHQCDRKFVSWEMLKQHRMRDHLGESIAIGMNTWCSLCNRFFPTIEAYHSHQQLHQNNNYVMAQTQLSMQSGNLSIIGLGDSSREIKKEHSFENTKSLTCPTCGKVCTQQSALSNHMRIHEPKRHKCDVCGRSFGLFIRLASHRMSEHNQQPSMSPVMACVEQEEALNAAREAREAREACTRGGRIRTYSEALERDNMLKSVEPLAKRNASIHSLQTSGISKNVARCGICLQWFDDHTTMLIHLQTHSDFYTCKNFTCHICKISFKEKWQLFRHEVSHKRIDASSSYICNVCNKTFLDKSLLKAHEKTHTVDKTYHCSKCNKLFFKEVSLLAHQCAGEPLFRKRDIASKSTQKSILQNTKRYRCSKCNASFNNPQSKNSHMRVHTESINAAVRQMEIKEEPENDMMPKLKPETSLEYIVSPIEPKVEINEGSTPPPIKRTLIRTAGGYRCGVCQSPFVLRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFTHHIKTDHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090167;
- 90% Identity
- iTF_01512349;
- 80% Identity
- -