Vvul011425.1
Basic Information
- Insect
- Vespula vulgaris
- Gene Symbol
- -
- Assembly
- GCA_905475345.1
- Location
- FR997669.1:1544267-1553694[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 5.7e-06 0.00036 20.3 1.0 1 23 203 225 203 225 0.98 2 31 0.0025 0.16 12.0 1.9 1 23 248 271 248 271 0.96 3 31 0.00012 0.0077 16.1 0.5 2 23 278 300 277 300 0.96 4 31 0.0055 0.34 10.9 1.1 2 21 321 340 320 341 0.92 5 31 0.00019 0.012 15.5 0.1 2 23 446 467 445 467 0.96 6 31 0.0037 0.23 11.4 0.5 1 23 473 496 473 496 0.91 7 31 0.00011 0.0068 16.3 0.1 1 23 569 592 569 592 0.96 8 31 0.013 0.83 9.7 0.7 1 23 598 621 598 621 0.96 9 31 0.057 3.6 7.7 0.8 1 23 634 656 634 656 0.97 10 31 2.3e-05 0.0015 18.4 0.6 3 23 702 723 700 723 0.96 11 31 0.11 6.9 6.8 3.3 2 23 786 809 785 810 0.92 12 31 5.1 3.2e+02 1.5 0.0 2 23 819 841 819 841 0.83 13 31 0.014 0.9 9.6 0.1 2 23 848 870 847 870 0.95 14 31 1.2e-05 0.00075 19.3 1.2 1 23 878 900 878 900 0.98 15 31 0.88 55 3.9 0.5 3 23 934 956 932 956 0.85 16 31 0.00019 0.012 15.5 3.3 1 23 959 982 959 982 0.97 17 31 0.00042 0.026 14.4 0.2 2 23 989 1011 988 1011 0.95 18 31 0.00084 0.053 13.5 3.9 1 21 1038 1058 1038 1059 0.95 19 31 0.0025 0.16 12.0 1.8 2 23 1073 1094 1072 1095 0.93 20 31 0.4 25 5.0 1.4 1 23 1098 1121 1098 1121 0.94 21 31 0.0064 0.4 10.7 0.7 2 23 1128 1151 1127 1151 0.91 22 31 2.8 1.8e+02 2.4 0.2 2 23 1159 1181 1159 1181 0.94 23 31 3.3 2.1e+02 2.1 0.0 2 23 1188 1210 1187 1210 0.87 24 31 0.21 13 5.9 2.7 2 23 1219 1241 1219 1241 0.96 25 31 0.73 46 4.2 0.7 2 23 1247 1269 1247 1269 0.92 26 31 0.18 11 6.1 2.0 1 23 1332 1355 1332 1355 0.95 27 31 0.001 0.065 13.2 2.7 1 21 1384 1404 1384 1405 0.95 28 31 0.29 18 5.5 1.9 2 23 1506 1528 1505 1528 0.94 29 31 1.3 85 3.4 1.0 2 23 1535 1557 1534 1557 0.94 30 31 0.64 40 4.4 2.5 1 23 1568 1590 1568 1590 0.97 31 31 0.51 32 4.7 0.2 3 21 1599 1617 1597 1618 0.94
Sequence Information
- Coding Sequence
- ATGGATATATTCGGTCAGGAAGGGAAAAATCGACAACTCGTCGACAAAATTCAGACCTGTCTACCGTTCAAGATCACAGAAAATGATCGTCTGCCAAAGTGTTTATGTTATCGCTGTATGTACAACCTGGAGAATTTTTATGACTTCAGGACAGCGTGCGTTAATGCGGTGGCATTGCTGGAAAGATATTTACCTCCTAGCGAATTAGCACATAATGGGGACAAAAGTAACTACATGCCGTACAGTAATGTACATCCAGAGTTTCTGAAGGAGAAAGAAAATATACCCATGTTAATCCCAGAGGCTCCCATAGTAAATCCTAATGCGGCTCTAGGTACACCGCCAAGATTAAATTCCGATGGAGAAGCGGATAATGAAATAGAAGAACTTCTTGAAAATAGTGGCACGGATGAAGAGGCAACGATAATAGATGATTCAGATAGAAAATCTGACGAATATGAAATGGATATGGAAACGAATCCTAGCGATTTCTTAGAAATGACCCCAATGGTAACTGAAGATAATGAAGAAACAAGTTCCAAAAATATGCCTATGGTAACGCAAGAATCTACAGTATTTCAACATACATCGGAGCAACACGAAGTGTATGTGTGTTCATTGTGTAACAAGGCATTCAGTTCTAAAGGACACTTGTCCCTTCATGCGAGAATTCATGTGGGTGCAGGCGATGTCATTGGTGAGAAAGTAATCACCGACGATCATACTTCCTATAAAAGGCCTTATCAATGTGATCTTTGCAACAAATCTTATTCAACGGCTAAACATCGATGGGGACATGTATCTACTACGCACAGAGGACATCCTGCCGTAACATGTGGGTATTGTTCACGCATTTATTCAACACGAACAAATCTTGAAGAACATATAAAATCGCGACATGCGGGATTACCGGCACCGTCCGAATTACCAAACCCCCTCTTCCGCTCGGAAACCAAATGTTACTGTAAAATGTGTTCCAAAAAATTTACGAGTATAGCAGATTTAAATATTCATAGTCGAATATGTATCGGACAACGAATAGAGCTGCAAGTGCAACAGGATATTAAGAGTGAATCACACAATAGTAAAAGTCTGATCGATACTTCGGATATATCCAGTATGGATACAGACGATGAGCACAAGGGATTTAAAAACGCGGAAGCAAAATTAGCTAAAAATCCACAGCTTACGATACTGAAACAGGCGTTGACAAAGGGGAGTGGTTTAAAAAGAGATTTGGATGATAAAACAAGAGCAAATTGTAGTCCACAAAAACTAGTGAAAACAGAAGAATATTATCTACCGACAGATGGCTGTGAAATGCAGAAGAGGTGGTACTGCGAAATGTGTCCTCAAAGTTTTACGTCAGTGGAAAATCTTAAAGAACACGAGATAACACATGATGCTGACAAACCTTATATATGTATATTGTGTAAAAAGGACTTTACTTTAAAATCATCACTCAGCAGACATATCTTGGTATCGCATGGTGTAGACCCATGCCCTTTTATAGATAGTGATAAGTGTTTAAAAAGAGTAGTTCTTACGCAATCATGGGGTCAACAGATACCGATACCTATGTCCGATCAGAAAGACGCAAAGGAACCTTCGGAGTTTGCTCTGTCTCCAGAAACAAATGTAGAAAATGAAGATGAAGACCAAGAGAGGAGTAATCACGAAAATATGGTAGAAATGGAGACAGTTTTTGTATGTGAAATATGTACAAGAGATTTTAATGATAGAGCATCATTGTGGTTGCATATACGTGCGACACATAAAGAATGTGCTGCTTTTGCTTGCGGAGTCTGTTTAAAAATATGTTCTGACAATACACAACTCCTAAGTCACGTTAACATGTATCACGGAGGATCAAAGTTGCTAGTATCGGAACAAAGAAGGTATAGCTGTACAATATGTGGTAGACAACACGATTCACGAAAGAAATTAATTGCTCACGTATCGATACATAATGTAAATCCTGCTTATGACCCCGCAAATTTTGTACAGTTAAACAGTAATTATTATAACGAAACATTAAATGGTAACGAAGTAAGTGAAAATATTTTGGAGTTTGGAGATGGAGACGAGGGAGAAAAAATAGACTGCTATATTTGTTATAAATCATTTCCAAACGAGGATCATCTTATAAGACACCAGAGAAACGCTCATAAGTTCGAACAAATGGCACCGATAGTAGATGCCATTGGTAATGGAAATCCAGGGAATATGAATGGTACTGGTAACAGAGCGCAGTATCATTTATTTTTTGTCTGTGAGCTTTGTGGTAGTTCACATCCCAGTAAATGGGAACGTTGGTTACATGTCAGTAGCACGCATAGTAACGAACCAAGTATAAAGTGCGAACGGGACGACTGCGGGAAAATATTTGCCACGAAGGCGTTGCGTAATGAACACGTACACCACCATCATTCGGTACAAGGTCCTTCGCCAAATACTTGTGAAGTTTGTGGTAAATTATGGGGTAGCCGAGTCGATTATTGGAAGCATGTGATGGGAGTACATTCCGATACAGTGCCACTTATATGTGGCGTTTGTCTCAAAGTATTTCCGAATGTATTGCAACTTAAAACACATGTGCAAACTAAACATTGGCCATTGACCAATGGCGATTTTAGTTGCGACATATGTGGTAGACCTTATTCGAATAAGTCTAAAATGTCAAGACATAGAAAAATTCATGGATTGGAAATCGATGGATATGATAATAACAGTATTAACGATGCCTTGAACGAATCGTCCAAGTACGAGCACAGTGTACCGCCAGAAATGGATTTAACATGTGAATTGTGTGCCGATATGAAATTTCCAAATCTGGAAAGTTTATGCAGTCATAGACGTATTGTGCACCGTCTATTTCCGTGTGATCTTTGTAACAAGTGTTACGGCAGAACGTCTCATTTATGGAAACATGTAAATCGGGTACACAAAGGTCACGTAGACATAACGTGTCCTTACTGTTTGAAAACGAGTGCGTCTAAAGACCATTTAGCGGCACACATAGCCAAAATTCATAGGTACGAGTTAGAAGTTAGAAAGGATAATAAAAATTCAGTAAATTTCAAATCTTCGAACGTAGAAGACGGAGTTTTGCATTATTGTGAAAAATGCAATAAAGGATTTCATAAACGGTACTTACTTAGACGTCACATGAAAGGTTGTCAGAATTATAGAAAAGATCCAGGCGCGTTGTTGACCCGTTGTCGTGCCTGTGAAAGAATATTTAAAGATCGCGCGAGTTTACAAAAGCACATAGAAAATCATCATAGTACGTACACTTGCCATTTATGTAACGAAACTATTACCTCTAAATTGGGTATTATGACACATAATCGGGTTAAGCATATGGATCATCCAGATCTTACGTGTGACTATATTAGTTGTAAAAAATTATTCAGAACGAAGGAAGATTTGGAGGCTCATAGGAAGGATCATAAATATCACATAAGTCCGAACGTTTGTGACTTCTGCGGTGATACCGTCGAGAATAAATTGAAATTAAAAATGCACGTGCTATCTTTGCACCGAAACGAAATTGGGGTGTCTTGCGGAGTTTGCTTGATACCTATGAAAGATCCAAAGGATTTGAAGAAACACGTCGAGGACGTGCACGAAAGTGTTTTATCCAAACCGAACACGTGTCAGGTATGTGGGAAACAGTACGCGTCTAAATGGAAAGCGTTCGATCACACGAAGAAATGTCATGGGAAGGTGTTTAGAACGTGCAAGCAATGTTTGGCTGTTTTTACGAACGATTCGGATATCAGAGATCATTATGAGCACGTTCATAACATTTCTAAAGATCAATTAGCTGCGTTCGAGTATCGCATGGACATCGGATCTAAGGTAGACGAGTACGACGGAGTACCAGCGGATATAGTCGTCAAGGAAGAACCGGACGACTTGGATTTCGACGAGGACTTGTGCGAGGACGATTTGAACAATTCCAAACGTAGGAGATCGTTAACCGACACCTACGATTGCGAGATGTGTCCGGAGATTTTCTTGAATTGTCACACATTGGCGAAACATTATCAAAACGTTCACAATACCGATCCAATTCGTATGTTCAAAAAGATAAAGCCGGACAACAACGACAATAGCAAAAGGAAGATGAGAAATCGAAAGAATTTCGAGTGCAAAAATTGTCAAAAACAATTCTGCACGAAAACGTTGTTTTGGAATCACATCAACGTATGCACGAGGCGTAACGCGTTCAACAGATTGGACATGCAAAGTATTATGCCAACTTCGATTTTGGAGACGCATTTGAAGAATAATAATCAAATAAAGAAAGAAGAAACTTCCTCGTTTATGAACGAATCGAATTTAAACATTCCAGATTTTAATTTATTTGAAGATATCAATCTACAGTTATCAGGGCAGAAGCCAGTACCGAATCTTATGCCATTGTCGCACATGAAACCTCCTACTGCGGTGAAATGCTCTAGGAAAGATTCTCGAAAGGTATACGACGAATCAACGAATACCGAATGCACGTGCGAAGTTTGTGGTAAACAATGGCCAGCGAAAAAGCATCTGTGGCAGCATCTCATTCGTTTTCACAGAGCGGAGGCAGCGGTTACTTGTGGGGTTTGTTTGAAATTATGTAAATCTTATCAGGATCTGTCCGACCATTTGAAGGCCACACATGCCGCGATATTATCCTGCGAGGGAAATAATTTCACGTGTAAAACGTGCGGACGTTATCACAACGCAAGAAGCAAATTATTGTTACATATGAGCATTCACATTAATTACGTTGGAAACTTTTGGTGTCAGAAGTGTCAGTTAAATTTCGAAAGCGAGAGTAAATTTTCTGAACATATATTGGAATGCAACAAGAAGATAGAGTCCGGTCGTAGTAACATAGAAGATAATATAAAGAATGAAAACGACGAGAAGGGAAGTTTGATCGGGGATGAGACGTCGGTCGTCGAGGAGGTCGAAGAAGTCGAAGATTTCGAGTCGGAACCGGAGGAGGATGGCGTAACACAGGAGGAGAGTAACAGCGAGAATTCAGAAAATTCTGAGGATTCGGATAGCGCTAGTAACACCAGTACGAGCGACGAGGAGGAACCGGAAGAGGAAAACGATTCTGAGGCTGAGTCTAGATCTAACAGTAGGGCGATAATAGGTGAGGTATCGTGCAATACCGAAAGCGACGATACCGACTCAGAAAATTCGGAGAATTCCGCGGAGATCGATAATAAAAATTTAAACGAGATGAATTGTTTTATGATATGCGCAGAGGAGGATAAGGATAGGAATATCGATGGGAAAGAAAATTTGGAAGAGCAATTAATGATGAATACGGATGCGGTAGGAGAAACTAAAGATATTAATCAAGAGGGACAACAGGAAGAATTGGATTTGAAAGAATCGGTTAATGGTACGAAGTTGAACAATTTTCACGTTAAGGAAACTGTCGAGGAAGGAAGAAGCGATTTGGATTTTACGGACGACGATGGTCCACCTGTTTTGAGTCCAATTATGCCTTTGTTAGAACAGGAGCAATCGGAACGACACAATAATCCTATGGACGATATGAGACACAAGCTTAGTCCTATGGTACCGTTGACGATTAACGATGAAAAAGAATTAGAGATGTGTGAACTGTCTGAAAATGGTAACGACGTTGAAAGAGGTACGACTTCGTCCATGTCGAATCCCATTAATTATTACGAAAATACGGATAACGACAAAGATATGAACGCTAATGCGTCTACGCATAATTTAGAGTACGGGTGTGAGGATTTTGAAAATATTGACAACGAGGAGGAAGATAGTATATCGGTCAACGAGGATGGACAAATGGAAATAGACGAACGGAACGTAGATTGTAATTCCGTAAATAGATATGAAAAATTAGAAATTACCGAATGTATCAACGATTCCGAGGTGGATTCTTACGAGGAAAATTTAGACGAGGAGATTAAATTTGACAATGAGACCAGAGATAACGATGTACAAATTCATAATTTGAGTGGTGCTGTATTGATGGTAGCTAACGATTCGGATGGTAATCAGATTTTAATTCAACAAAATGTATTAACGATAGGAAATGAGGATTCTAATACAGGTGCGACAGAATATATTTATCACGAAACGAATGAGTACGAGATAGAAGAGTATGGTATAGCACAGCATGAAACAAATTCTACGATACAGTCTGATGATATTCAAGAGATGGCGTATGTTCAAGATATATCAGAAAATGAGGATAGCATCGAAGAGGTAGTAGAAATACATGATATAGAGGAACAAAGTATGAGTGCCAAAAGCAAACAATCTAACTTATAA
- Protein Sequence
- MDIFGQEGKNRQLVDKIQTCLPFKITENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERYLPPSELAHNGDKSNYMPYSNVHPEFLKEKENIPMLIPEAPIVNPNAALGTPPRLNSDGEADNEIEELLENSGTDEEATIIDDSDRKSDEYEMDMETNPSDFLEMTPMVTEDNEETSSKNMPMVTQESTVFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPSELPNPLFRSETKCYCKMCSKKFTSIADLNIHSRICIGQRIELQVQQDIKSESHNSKSLIDTSDISSMDTDDEHKGFKNAEAKLAKNPQLTILKQALTKGSGLKRDLDDKTRANCSPQKLVKTEEYYLPTDGCEMQKRWYCEMCPQSFTSVENLKEHEITHDADKPYICILCKKDFTLKSSLSRHILVSHGVDPCPFIDSDKCLKRVVLTQSWGQQIPIPMSDQKDAKEPSEFALSPETNVENEDEDQERSNHENMVEMETVFVCEICTRDFNDRASLWLHIRATHKECAAFACGVCLKICSDNTQLLSHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLIAHVSIHNVNPAYDPANFVQLNSNYYNETLNGNEVSENILEFGDGDEGEKIDCYICYKSFPNEDHLIRHQRNAHKFEQMAPIVDAIGNGNPGNMNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSTHSNEPSIKCERDDCGKIFATKALRNEHVHHHHSVQGPSPNTCEVCGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLKTHVQTKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEIDGYDNNSINDALNESSKYEHSVPPEMDLTCELCADMKFPNLESLCSHRRIVHRLFPCDLCNKCYGRTSHLWKHVNRVHKGHVDITCPYCLKTSASKDHLAAHIAKIHRYELEVRKDNKNSVNFKSSNVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCDYISCKKLFRTKEDLEAHRKDHKYHISPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTNDSDIRDHYEHVHNISKDQLAAFEYRMDIGSKVDEYDGVPADIVVKEEPDDLDFDEDLCEDDLNNSKRRRSLTDTYDCEMCPEIFLNCHTLAKHYQNVHNTDPIRMFKKIKPDNNDNSKRKMRNRKNFECKNCQKQFCTKTLFWNHINVCTRRNAFNRLDMQSIMPTSILETHLKNNNQIKKEETSSFMNESNLNIPDFNLFEDINLQLSGQKPVPNLMPLSHMKPPTAVKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLSDHLKATHAAILSCEGNNFTCKTCGRYHNARSKLLLHMSIHINYVGNFWCQKCQLNFESESKFSEHILECNKKIESGRSNIEDNIKNENDEKGSLIGDETSVVEEVEEVEDFESEPEEDGVTQEESNSENSENSEDSDSASNTSTSDEEEPEEENDSEAESRSNSRAIIGEVSCNTESDDTDSENSENSAEIDNKNLNEMNCFMICAEEDKDRNIDGKENLEEQLMMNTDAVGETKDINQEGQQEELDLKESVNGTKLNNFHVKETVEEGRSDLDFTDDDGPPVLSPIMPLLEQEQSERHNNPMDDMRHKLSPMVPLTINDEKELEMCELSENGNDVERGTTSSMSNPINYYENTDNDKDMNANASTHNLEYGCEDFENIDNEEEDSISVNEDGQMEIDERNVDCNSVNRYEKLEITECINDSEVDSYEENLDEEIKFDNETRDNDVQIHNLSGAVLMVANDSDGNQILIQQNVLTIGNEDSNTGATEYIYHETNEYEIEEYGIAQHETNSTIQSDDIQEMAYVQDISENEDSIEEVVEIHDIEEQSMSAKSKQSNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_01512963;
- 80% Identity
- -