Vvul010806.1
Basic Information
- Insect
- Vespula vulgaris
- Gene Symbol
- -
- Assembly
- GCA_905475345.1
- Location
- FR997669.1:2121680-2127476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.076 4.8 7.3 3.1 1 23 344 366 344 366 0.97 2 19 0.053 3.3 7.8 0.6 2 23 401 422 400 422 0.93 3 19 0.00018 0.011 15.6 2.2 1 23 492 514 492 514 0.97 4 19 0.001 0.065 13.2 0.5 2 23 518 539 517 539 0.96 5 19 0.0032 0.2 11.6 7.0 2 23 598 619 597 619 0.98 6 19 0.015 0.93 9.5 7.3 1 23 624 646 624 646 0.96 7 19 0.00035 0.022 14.7 0.7 1 21 652 672 652 676 0.92 8 19 0.0014 0.089 12.7 3.7 2 23 749 770 748 770 0.95 9 19 0.00032 0.02 14.8 4.0 1 23 826 848 826 848 0.96 10 19 0.00023 0.015 15.2 0.7 1 20 853 872 853 874 0.94 11 19 0.00041 0.026 14.4 0.6 2 23 885 906 885 906 0.97 12 19 3.2e-05 0.002 17.9 1.7 2 23 945 966 944 966 0.97 13 19 2.1e-05 0.0013 18.5 1.6 1 23 971 993 971 993 0.95 14 19 0.00012 0.0075 16.1 2.9 1 23 999 1021 999 1021 0.98 15 19 3.8e-06 0.00024 20.8 0.4 1 23 1037 1059 1037 1059 0.95 16 19 3.1e-07 1.9e-05 24.3 0.6 1 23 1065 1087 1065 1087 0.99 17 19 3.3e-05 0.0021 17.9 0.2 1 23 1093 1115 1093 1115 0.97 18 19 0.00012 0.0078 16.1 4.1 1 23 1121 1143 1121 1143 0.96 19 19 0.0079 0.5 10.4 0.3 1 20 1149 1168 1149 1170 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAGTACGTCGGATCCGCCGCAAAGTGAACAAGAAATTGTGTCTACTGTGGAGATATGTCGTATATGCCTCCTTGGTAACCTGGTGATGCGAGATCTCTTTCTAGGAAATGAGGTCGCCTCTTTATCGGCTAAAGCGATGAATTTCGCGAACGTTAAGATGTTACCAGGAGATGGCTTACCTCCTCGTGTTTGTAATGAATGTGCGGATAAACTTGAATCTGCATATGAATTTAAACTTCAAGTTGAACAAGCTGACAATGTATTAAGAGAAAGATTTGATGGTATTAAAGAAGAATTATTTTTTAACGAAGTTGAAGTACATTTGGAAGTAGACAGAAATGAAGCTATCAATGATATTCATTTAGAATCTCATTACCAACATGCCGCTGAAGTATTAACAGAGGAATCAGTAAATGAGAAATCTCTCTTGAAAGAACAATTGGCATTGTTACAAGTTGAAAAATTGGTAGAAAGAGAACAATTAAGAGAAGAAGAAAATAATTCACAAATATTGGAGCAACAAAGTATAATGAACAATTCTCATCACGAAGAGAAGTTCACGAATCAAATACATGAAAATACTTGTACGTTGGTAAATAATACAGAAAATCAAGAAGTATTAAAACCAGATAGCATTAATGAAAATTGTACAGATGCGATTCCTGCGGAAGAACATGATTATATTATGCAACAGGATTATGTTATAAATGAACAATTTTCTTCTCAAGAATCTAAGTCATCTAAAGAGAATATAACGCAGTGCAATGAACCACTTACGGAATCACATATACTTGAAGGGTGTAAAATAGAAACAGAACATATGCCGCTTACAAATATTGACACGCTCGTTGAAAAAGATTTGTCTCTGACTGAAATTAGAAAAAGTAAACGAAAATCATCGCGACGAAATTTTACAAGCGACAGAGATTCCGACGAAGAAAATTATTTCGAAAATTTGAATCTTAGCTCTCGTCTTAAACGGGCACAAGCTGATAGGTCAGAAAAGATTTACTTCATGTGTTATCTTTGTGACAAACAATTTCTTTCTAAGAACGTATTGAAAGAACATATGCATTCACATGAGGAAATCAGGCGAGCTTTGTCTCTTAAAAAAGTGCCTGAAAAGTCACCAAAGGTATCTAATACTTCTCCAAAAATGCCACCATCTGGAAAAAAGGCTAACAAATGTCCATATTGTGGGAAAGAATATTTATACGTAATTTCATTCAGCAAACATCTTAAACAACATGAAAGAGAAAAAGAAGATTCTATGCCTCTTGAAATATCATTTCATGAAGACGAACATAGTTTAGGTTTTGATAACCACAGTAATTCACAATATTCAGATTATGAATATAGAAAAAGAATGAAGCAAGAGGAAGTATATAATGAGAATGAAGAAGACAAAGGTGATCAAGAAACAGAAAAACAAAGAAAGAAATCTCACTTGGAAACTTTTGAATGTGACAAATGTTCGGAAAAATTTTATACAAGACGAAGTTTAAGAAAGCATGCACTTTCACATATTATCTTAAAATGTAATGTCTGCAATGAACAGTTTGATGAGCTTGAGCAATTAAAAAATCATCGTGCAAAACATGTAGTAGAAGGAATGTTAATGGATCAAGATTTAGAAGAAAATATAGAACACCATATAATTAACAAAGATGATGAAGAACAAGATATTAAAGGCGATAATGAAGACGATTCGGAAGTTGAGAATAATATTGATGATGCTGAAGATAAAGAAAAGTGGGCAGAAACAAAAGAATCCAAATGTCCGCACTGTCCGTCAACCTGTTCTCACAAGAAATCTCTTTCGAGGCACATCGACACACATATGGTTTCAAAATACAGCTGTAAAGTATGTTGTCAACAATTTACAAGAAAAGACCATTTACGAAGACACACTGAACAGCATGGAAGAATAAAAACGTATAAATGTACGCAATGTAATAAAACCTTTGGAAACGAATTGACTTTACGTAATCATCTAATAGCGACTAATCATAAGACTTTCGTCCACGGACAAGAATATGATCCTAATAAACGTATAAAACGAGTGGCAGCTAAAGCTGCACAAAAGATTATTGATAAAATAAAAACAGAAGATGGGTTAGAAGATTATGACGAAGATGACGATAATAATGATTTAATCAATATGGATGCCCATCATAATCGTAAGCATGAAAATTCTTTAAAGAAAACTAATAATAGGAAAGAATTAGAATGTGCCACTTGTAATAAAAAATGTAATTCGAAACAAACTCTAACAAAACATATGGAGCAACATGTAAAAGATGAAAAAGCTGAGAAGATGGATAGATCGGACAAATTTAAAAAGACAGTAGAGAAACAGGAACAACAAAGAATAGGTGTTATGGAATTAGGAAAGATCGAAGACGATGACGATGATAATTCAGATTTTGAAAGCGGTCTGGACTGGTTGATGGATAATCACGAATGTGCAACATGTAAAAAGAAATATAGTACGAAAAAATCTCTGTTGCGACATCAATTACTTCACGAGGAACCAAATTTCGAATGTGATATATGTAATGTCAAATTTTATCGTAAGGATAAATTAAAAGCTCATTATGATAAATGTTCAGAAAAAAATCCTGATCAAGTTAGGAAGTGCAATATTTGTGGTGACAGTTTCGAAAATAATGAAATGCTCCGACAACATAGAGCTAAACATGTAACTGAAGGAATATTAACAGAAGAAGATTTAAGAGATATTGAACCACGTCCTGAAGAAAGAAAGCATGGAGAGAAAGTTGTTAGAAAAAGAAGGACAGATATAGTAGGCCTTGAGTGTACAGAATGTAATAAACATTACACATCTAGAAAAGGTTTATTACGTCACATACAAGTACACGAAGGTAAGAAATATTTATGTGACATATGTCCAAAGAAATTCTATAGAAGAGAACATTTAAAAATTCATGTAGCTAAGCATAATATGATTAAACCATATAAATGTACAAGATGCACCAAACGATTTATTAAAGAGGAACAACTTACGAATCATTTATCGAAACACGATAGACCGTTTAAGAAAAACAAAGAAACGGATAGTTCAAAAAGATTTTTATGTGAAATCTGTTCTAAGAGTTTCACTCAATCGACTACTTTAATAGCGCATTTAAGAGCACACAATGGTATAAAGCCATATGTTTGTGAAGTATGTTCTAGACCTTTTACAACAAATGCATATTTAAAAATGCATATGAGAACGCATACACAGGAAAGACCATATATATGTCAGTATTGTTCTAGAGCATTTGCCCGAGCTGATACTCTTGCTAATCACTTGACATCGCATACTGGTGAAGCCAAGTATCATTGCAAGTATTGTCCAAAAAATTTCCGTAGATTAAAGTCGTTAAAAGAACATGTTTTTATTCATACTGGTCAAAGGCCGTATGCATGTCCTACGTGTGATCGCAGATTTAATAACAATGGTAGTCGTTATGCGCATAGCAAACGATGTAAACAAAATTTTTCGCAAAATCAGAATCGTACTCAAACCCTTACTGAAGTTCAAACACAACAACCACCACAGAGAATACAACAAACTCTTGCTCAAACGCAGGTGGTTAAAGCACAAAATATTAAGACCATTACTATTACTAGACAAGCTGAACCAGTAACTACACAACAAATAATGCAACATCAAGAAATATTAATGCCACTTATCCTACCACTTACTGTAACTCTTGCAGATGTAGGTGACGAAGTAATATTACCCGAGGGTACAAAAATATTTACAACGTCGTAA
- Protein Sequence
- MDAVEISTSDPPQSEQEIVSTVEICRICLLGNLVMRDLFLGNEVASLSAKAMNFANVKMLPGDGLPPRVCNECADKLESAYEFKLQVEQADNVLRERFDGIKEELFFNEVEVHLEVDRNEAINDIHLESHYQHAAEVLTEESVNEKSLLKEQLALLQVEKLVEREQLREEENNSQILEQQSIMNNSHHEEKFTNQIHENTCTLVNNTENQEVLKPDSINENCTDAIPAEEHDYIMQQDYVINEQFSSQESKSSKENITQCNEPLTESHILEGCKIETEHMPLTNIDTLVEKDLSLTEIRKSKRKSSRRNFTSDRDSDEENYFENLNLSSRLKRAQADRSEKIYFMCYLCDKQFLSKNVLKEHMHSHEEIRRALSLKKVPEKSPKVSNTSPKMPPSGKKANKCPYCGKEYLYVISFSKHLKQHEREKEDSMPLEISFHEDEHSLGFDNHSNSQYSDYEYRKRMKQEEVYNENEEDKGDQETEKQRKKSHLETFECDKCSEKFYTRRSLRKHALSHIILKCNVCNEQFDELEQLKNHRAKHVVEGMLMDQDLEENIEHHIINKDDEEQDIKGDNEDDSEVENNIDDAEDKEKWAETKESKCPHCPSTCSHKKSLSRHIDTHMVSKYSCKVCCQQFTRKDHLRRHTEQHGRIKTYKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDEDDDNNDLINMDAHHNRKHENSLKKTNNRKELECATCNKKCNSKQTLTKHMEQHVKDEKAEKMDRSDKFKKTVEKQEQQRIGVMELGKIEDDDDDNSDFESGLDWLMDNHECATCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLRQHRAKHVTEGILTEEDLRDIEPRPEERKHGEKVVRKRRTDIVGLECTECNKHYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRPFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFSQNQNRTQTLTEVQTQQPPQRIQQTLAQTQVVKAQNIKTITITRQAEPVTTQQIMQHQEILMPLILPLTVTLADVGDEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090138;
- 90% Identity
- iTF_01513621;
- 80% Identity
- -