Vpen002237.1
Basic Information
- Insect
- Vespula pensylvanica
- Gene Symbol
- -
- Assembly
- GCA_014466175.1
- Location
- CM025337.1:1544046-1548246[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.071 4.3 7.4 3.3 2 23 44 67 43 68 0.92 2 21 3.3 2e+02 2.2 0.0 2 23 77 99 77 99 0.83 3 21 0.0093 0.57 10.2 0.1 2 23 106 128 105 128 0.95 4 21 7.7e-06 0.00047 19.9 1.2 1 23 136 158 136 158 0.98 5 21 0.57 35 4.6 0.5 3 23 192 214 190 214 0.85 6 21 0.00012 0.0076 16.1 3.3 1 23 217 240 217 240 0.97 7 21 0.00027 0.016 15.1 0.2 2 23 247 269 246 269 0.95 8 21 0.00054 0.033 14.1 3.9 1 21 296 316 296 317 0.95 9 21 0.0016 0.097 12.6 1.8 2 23 331 352 330 353 0.93 10 21 0.26 16 5.7 1.4 1 23 356 379 356 379 0.94 11 21 0.0042 0.25 11.3 0.7 2 23 386 409 385 409 0.91 12 21 1.8 1.1e+02 3.0 0.2 2 23 417 439 417 439 0.94 13 21 2.2 1.3e+02 2.8 0.0 2 23 446 468 445 468 0.87 14 21 0.13 8.2 6.6 2.7 2 23 477 499 477 499 0.96 15 21 0.48 29 4.9 0.7 2 23 505 527 505 527 0.92 16 21 0.11 7 6.8 2.0 1 23 590 613 590 613 0.95 17 21 0.00067 0.041 13.8 2.7 1 21 642 662 642 663 0.95 18 21 0.19 12 6.1 1.9 2 23 764 786 763 786 0.94 19 21 0.87 53 4.0 1.0 2 23 793 815 792 815 0.94 20 21 0.41 25 5.0 2.5 1 23 826 848 826 848 0.97 21 21 0.33 20 5.3 0.2 3 21 857 875 855 876 0.94
Sequence Information
- Coding Sequence
- ATGAATGGTACTGGTAACAGAGCGCAGTATCATTTATTTTTTGTCTGTGAGCTTTGTGGTAGCTCACATCCTAGTAAATGGGAACGTTGGTTACATGTCAGTAGCACGCATAGTAACGAACCAAGTATAAAGTGCGAACGGGACGACTGCGGGAAAATATTTGCCACGAAGGCGTTGCGTAACGAACACGTACACCACCATCATTCTGTACAAGGTCCTTCGCCAAATACTTGTGAAGTTTGTGGTAAATTATGGGGTAGCCGAGTCGATTATTGGAAGCATGTGATGGGAGTACATTCCGATACAGTGCCACTTATATGCGGCGTTTGTCTCAAAGTATTTCCGAATGTATTGCAACTTAAGACACACGTGCAAACTAAACATTGGCCATTGACCAATGGCGATTTTAGTTGCGACATATGTGGTAGACCTTATTCGAATAAGTCTAAAATGTCAAGACACAGAAAAATTCATGGATTGGAAATCGATGGATATGATAATAACAGTATTAACGATGCCTTGAACGAATCGTCCAAGTACGAGCACAGTGTACCGCCAGAAATGGATTTAACATGTGAATTGTGTGCCGATATGAAATTTCCAAATCTGGAAAGTTTATGCAGTCATAGACGTATTGTGCACCGTCTATTTCCGTGTGATCTTTGTAACAAGTGTTACGGCAGAACGTCTCATTTATGGAAACATGTAAATCGGGTACACAAAGGTCACGTAGACATAACGTGTCCTTACTGTTTGAAAACGAGTGCGTCTAAAGACCATTTAGCGGCACACATAGCCAAAATTCATAGGTACGAGTTAGAAGTTAGAAAGGATAATAAAAATTCAGTAAATTTCAAATCTTCGAGCGTAGAAGACGGAGTTTTACATTATTGTGAAAAATGCAATAAAGGATTTCATAAACGGTACTTACTTAGACGTCACATGAAAGGTTGTCAGAATTATAGAAAAGATCCAGGCGCGTTGTTGACCCGTTGTCGCGCCTGTGAAAGAATATTTAAAGATCGTGCGAGTTTACAAAAGCACATAGAAAATCATCATAGTACGTACACTTGCCATTTATGTAACGAAACTATTACCTCTAAATTGGGTATTATGACACATAATCGGGTTAAGCATATGGATCATCCAGATCTTACGTGCGACTATATCAGTTGTAAAAAATTATTCAGAACGAAGGAAGACTTGGAGGCTCATAGGAAGGATCATAAATATCACATAAGTCCGAACGTTTGTGACTTCTGCGGCGATACCGTCGAGAATAAATTGAAATTAAAAATGCACGTACTATCTTTGCACCGAAACGAAATTGGTGTGTCTTGCGGAGTTTGTCTGATACCTATGAAAGATCCAAAGGATTTGAAGAAACACGTCGAGGACGTGCACGAAAGTGTTTTATCTAAACCGAACACGTGTCAGGTATGTGGGAAACAGTACGCGTCTAAATGGAAAGCGTTCGATCACACGAAGAAATGTCATGGGAAGGTGTTTAGAACGTGCAAGCAATGTTTGGCTGTTTTTACGAACGATTCGGATATCAGAGATCATTATGAGCACGTTCACAACATTTCTAAAGATCAATTAGCTGCGTTCGAGTATCGCATGGACATCGGATCTAAGGTAGACGAGTACGACGGAGTACCAGCGGATATAGTCGTCAAGGAAGAACCGGACGACTTGGATTTCGACGAGGATTTGTGCGAGGACGATTTGAACAATTCCAAACGTAGGAGATCGTTAACCGACACCTACGATTGCGAGATGTGTCCGGAAATTTTCTTGAATTGTCACACATTGGCGAAACATTATCAAAATGTTCACAATACCGATCCAATTCGTATGTTCAAAAAGATAAAGCCGGACAACAACGACAATAGCAAAAGGAAGATGAGAAATCGAAAGAATTTCGAGTGCAAAAATTGTCAAAAACAATTCTGCACGAAAACGTTGTTTTGGAATCACATAAACGTATGCACCAGGCGTAACGCGTTCAACAGATTGGACATGCAAAGTATTATGCCAACTTCGATTTTGGAGACGCATTTGAAGAATAATAATCAAATAAAGAAAGAAGAAACTTCCTCGTTTATGAGCGAATCGAATTTAAACATTCCAGATTTTAATTTATTTGAAGATATTAATCTACAGTTATCAGGGCAGAAGCCAGTACCGAATCTTATGCCATTGTCGCATATGAAACCTCCTACTGCGGTGAAATGCTCTAGGAAAGATTCTCGAAAGGTATACGACGAATCAACGAATACCGAATGCACGTGCGAAGTTTGTGGTAAACAATGGCCAGCGAAAAAGCATCTGTGGCAGCATCTCATTCGTTTTCACAGAGCGGAGGCAGCGGTTACTTGTGGGGTTTGTTTGAAATTATGTAAATCTTATCAGGATCTGTCCGATCATTTGAAGGCCACACATGCAGCGATATTATCCTGCGAGGGAAATAATTTCACGTGTAAAACGTGCGGACGTTATCACAACGCAAGAAGCAAATTATTGTTACATATGAGCATTCACATTAATTACGTTGGAAACTTTTGGTGTCAGAAGTGTCAGTTAAATTTCGAAAGCGAGAGTAAATTTTCTGAACATATATTGGAATGCAACAAGAAGATAGAGTCTGGTCGTAGTAACATAGAAGATAATATAAAGAATGAAAACGACGAGAAGGGAAGTTTGATCGGTGATGAGACGTCGGTCGTCGAGGAGGTCGAAGAAGTCGAAGATTTCGAGTCGGAACCGGAGGAGGATGGCGTAACACAGGAGGAGAGTAACAGCGAGAATTCCGAAAATTCTGAGGATTCGGATAGTGCTAGTAACACCAGTACGAGCGACGAGGAGGAACCGGAAGAGGAAAATGATTCCGAAGCTGAGTCTAGATCTAACAGTAGGGCGATAATAGGTGAGGTATCGTGTAATACCGAAAGCGACGATACCGATTCAGAAAATTCGGAGAATTCCGCTGAGATCGATAATAAAAATTTAAACGAGATGAATTGTTTTATGATATGCACAGAGGAGGATAAGGATAGGAATATCGATGGGAAAGAAAATTTGGAAGAGCAATTAATAATGAATACGGATGCGGTAGGAGAAACTAAAGATATTAATCAAGAGGGACAACAGGAAGAATTGGATTTGAAAGAATCGGTTAATGGTACGAAGTTGAACAATTTTCACGTTAAGGAAACTGTCGAGGAAGGAAGAAGCGATTTGGATTTTACGGACGACGATGGTCCACCTGTTTTGAGTCCAATTATGCCTTTGTTAGAACAGGAGCAATCGGAACGACACAATAATCCTATGGACGATATGAGACACAAGCTTAGTCCTATGGTACCGTTGACGATTAACGATGAAAAAGAATTAGAAATGTGTGAATTGTCTGAAAATGGTAACGACGTTGAAAGAGCTACGACTTCGTCCATGTCGAATCCCATTAATTATTACGAAAATACGGATAACGACAAAGACATGAACCCTAATGCGTCTACGCATAATTTAGAGTACGGGTGTGAGGATTTTGAAAATATTGACAACGAGGAGGAAGATAGTATATCGGTCAACGAGGATGGACAAATGGAAATAGACGAACGGAACGTAGATTGTAATTCCGTAAATAGATATGAAAAATTAGAAATTACCGAATGTATCAACGATTCCGAGGTAGATTCTTACGAGGAAAACTTAGACGAGGAGATTAAATTTGACAATGAGACCAGAGATAACGATGTACAAATTCATAATTTGAGTGGTGCTGTATTGATGGTAGCTAACGATTCGGATGGTAATCAGATTTTAATTCAACAAAATGTATTAACAATAGGAAATGAGGATTCTAATACAGGTGCGACAGAATATATTTATCACGAAACGAATGAGTACGAGATAGAAGAGTATGGTATAGCACAGCATGAAACAAATTCTACGATACAGTCTGATGATATTCAAGAGATGGCGTATGTTCAAGATATATCGGAAAATGAGGATAGCATCGAAGAGGTAGTAGAAATACATGATATAGAGGAACAAAGTATGAGTGCCAAAAGCAAACGATCTAACTTATAA
- Protein Sequence
- MNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSTHSNEPSIKCERDDCGKIFATKALRNEHVHHHHSVQGPSPNTCEVCGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLKTHVQTKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEIDGYDNNSINDALNESSKYEHSVPPEMDLTCELCADMKFPNLESLCSHRRIVHRLFPCDLCNKCYGRTSHLWKHVNRVHKGHVDITCPYCLKTSASKDHLAAHIAKIHRYELEVRKDNKNSVNFKSSSVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCDYISCKKLFRTKEDLEAHRKDHKYHISPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTNDSDIRDHYEHVHNISKDQLAAFEYRMDIGSKVDEYDGVPADIVVKEEPDDLDFDEDLCEDDLNNSKRRRSLTDTYDCEMCPEIFLNCHTLAKHYQNVHNTDPIRMFKKIKPDNNDNSKRKMRNRKNFECKNCQKQFCTKTLFWNHINVCTRRNAFNRLDMQSIMPTSILETHLKNNNQIKKEETSSFMSESNLNIPDFNLFEDINLQLSGQKPVPNLMPLSHMKPPTAVKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLSDHLKATHAAILSCEGNNFTCKTCGRYHNARSKLLLHMSIHINYVGNFWCQKCQLNFESESKFSEHILECNKKIESGRSNIEDNIKNENDEKGSLIGDETSVVEEVEEVEDFESEPEEDGVTQEESNSENSENSEDSDSASNTSTSDEEEPEEENDSEAESRSNSRAIIGEVSCNTESDDTDSENSENSAEIDNKNLNEMNCFMICTEEDKDRNIDGKENLEEQLIMNTDAVGETKDINQEGQQEELDLKESVNGTKLNNFHVKETVEEGRSDLDFTDDDGPPVLSPIMPLLEQEQSERHNNPMDDMRHKLSPMVPLTINDEKELEMCELSENGNDVERATTSSMSNPINYYENTDNDKDMNPNASTHNLEYGCEDFENIDNEEEDSISVNEDGQMEIDERNVDCNSVNRYEKLEITECINDSEVDSYEENLDEEIKFDNETRDNDVQIHNLSGAVLMVANDSDGNQILIQQNVLTIGNEDSNTGATEYIYHETNEYEIEEYGIAQHETNSTIQSDDIQEMAYVQDISENEDSIEEVVEIHDIEEQSMSAKSKRSNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -