Basic Information

Insect: Vespula pensylvanica
Gene Symbol: -
Assembly: GCA_014466175.1
Location: CM025337.1:18292669-18295208[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.8e-05 0.0023 17.8 1.2 2 23 255 276 254 276 0.97

2 8 0.0014 0.084 12.8 0.4 1 23 282 305 282 305 0.94

3 8 3.5e-05 0.0021 17.9 0.9 1 23 407 429 407 429 0.99

4 8 2.3e-05 0.0014 18.4 1.3 1 23 435 457 435 457 0.97

5 8 2.6e-05 0.0016 18.3 3.4 1 20 463 482 463 485 0.93

6 8 0.00027 0.016 15.1 3.8 1 23 491 513 491 513 0.98

7 8 0.00015 0.0092 15.9 3.8 1 23 519 541 519 541 0.99

8 8 3.2e-06 0.0002 21.1 0.4 1 23 547 569 547 569 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.8e-05	0.0023	17.8	1.2	2	23	255	276	254	276	0.97
2	8	0.0014	0.084	12.8	0.4	1	23	282	305	282	305	0.94
3	8	3.5e-05	0.0021	17.9	0.9	1	23	407	429	407	429	0.99
4	8	2.3e-05	0.0014	18.4	1.3	1	23	435	457	435	457	0.97
5	8	2.6e-05	0.0016	18.3	3.4	1	20	463	482	463	485	0.93
6	8	0.00027	0.016	15.1	3.8	1	23	491	513	491	513	0.98
7	8	0.00015	0.0092	15.9	3.8	1	23	519	541	519	541	0.99
8	8	3.2e-06	0.0002	21.1	0.4	1	23	547	569	547	569	0.98

Sequence Information

Coding Sequence: ATGGGAATGCCAGATTCATATTGTGTAATTTGTAATACAAATGTTGATGTGTCTTCCTGTGTAAATATTTTTTATACATCTCTTCCTCATAACGGTGAATTACTAGCAAGCTTTGCATTACGTGAACTCAGACCAACAACCTCTAATTTACATAGCTCTTATATCTGTCCTCGCTGTTATAAATTATTTCAAATGTTAGAACAAGCACAATGGACTGTTACAAATATTCGTTGTGAGATTTTAAAAGTTTATCAGTCTGGTGAGAAGAAAAAATTTGTTAGACGCATGTTAACAAATAATACTGATTATCTTTTACATAATACTCAAATTTTGGAAGGTATTCAAACAACTAAACGAGATATAGATCAGACAATAAATGGATTGAAAAATATTGCAGATATAACTTCTACTTCATTTATGCAAGATGTTTCACTTGAACAAATTTCACAGACATTTAATGCAAATATGACTACAAATAATATTAAAAATATTGAACTGATAGATACAAAAGATATTTTTAAAGAAGAAATAGATATTGATAGCAAAAATTTGGATAATATACACTCAAATATTAGAAGCAATAATAATTGTAATATGGAATATAAAAATAGTAACAATGTAAATAAAAATATAAAGACTGAAATACATAATAAAACTATAGATTTAAATGTAAAAATCTTAGAAAATGATTTTCATAAATCTATTTTAACTAATAATAGTATAGAAGAACGAAATATCACAGAACAAGAAACATCTTATAATCAATGTAAATTCTGTACTGAATCATTCAAGACATATGATGAATTAAATGTACATTTATTGAAACATAATGATATACAATTATATCAGTGTTCTAAATGTAAGGAAGTATTTACTAGTATTTCACTTGCAAATACACATGCATCAAAAGTACATGTTGAAGATCAAGATTGTGTTAACATCTTGCCAGTCTCATATAAAAATGAAATAGGACACTTCCTTAATGATGTCTCCTTTTTTCCACAAAATAATGTAGAGACATTAAAGTCAAATACTTTTGAACATACAGAGATCAATAAAAATATATCAGAAATAAAGGATAATTCAGCATGTATTACAGAAAATAAATTTGCTGAAAGTAATGAAATTAATTCCATGGATGAGAAAAGCAAAATCAATTTAAATTCTGCCTCTTGGAAGTCAGGAAGAATATCAAAATATAGCTTAAAGCCATTAAAATATACATGTCCTACTTGTAATAAAAAGTGGAGAACATCTGCAGAATTAAAGACACATATTAAATCTCATTCAAATATAAGACCATATATGTGTGAAAAATGTGGTCAAGCATACAAACACAAACATGCTTTAGAAATACATATTGGTATGCACAATGGAATAAATCCATTTCAATGTAGCTTTTGTAAAAAATGTTTTACCCAAAAAGGCGCATTAATGAGACATTTACCAATGCATACTGGGGAAACACCATATCAGTGTGAATTATGCGGTAAAAGATTTGTACATCATACATCATACAACATGCATGCTTTATCTCATACTGGAAAAAAATCTTATCAATGTCATGTATGTGATTTATCACTACTTTCTACATCACATTTAAAAAGACACATGCGAGTACATACAGGCGAAAAACCATATAGCTGTATGTTATGTGGAAAACGTTTCGCAGAGCGATACAATTTACTAGCTCACCAAAAAATACATAATACATCAGAAACAACGGCAAAAGATATTGTAAAATTACAAAACATGTGCAATCAATGTAACTCATTATATCAGAAAGGACATACATGTAATGAGCATACAAAAGTACAATGCAATTCAGATAACAATATTACAACTACAGAAAATGTAAGTAATTATAATTGTAATTTACAATCGCTTGAACAATCAAAACTTTATAAATTACAAAATAAAAATCAACAGAATTTAAAGAATATTAGTTCTGATAATAATAAAACTTGGGTAGAAATAAATCAATCAAAGTTAAATTGTACTAGTAATGAAACAGAATTCGTATTATTGCAAGATTCTTTATCACAAGGTGATGCAACTCCTGTAACTATTACATTTAATGACCATAAAATGTCTGTGGGAAATAAAAATTATAATACAAGTTTAAAAATCATAATAGAATCTTCCAATGTTTCCATTCCAATTAATAATCAAGTTATAATAGATGACACACATACATAA
Protein Sequence: MGMPDSYCVICNTNVDVSSCVNIFYTSLPHNGELLASFALRELRPTTSNLHSSYICPRCYKLFQMLEQAQWTVTNIRCEILKVYQSGEKKKFVRRMLTNNTDYLLHNTQILEGIQTTKRDIDQTINGLKNIADITSTSFMQDVSLEQISQTFNANMTTNNIKNIELIDTKDIFKEEIDIDSKNLDNIHSNIRSNNNCNMEYKNSNNVNKNIKTEIHNKTIDLNVKILENDFHKSILTNNSIEERNITEQETSYNQCKFCTESFKTYDELNVHLLKHNDIQLYQCSKCKEVFTSISLANTHASKVHVEDQDCVNILPVSYKNEIGHFLNDVSFFPQNNVETLKSNTFEHTEINKNISEIKDNSACITENKFAESNEINSMDEKSKINLNSASWKSGRISKYSLKPLKYTCPTCNKKWRTSAELKTHIKSHSNIRPYMCEKCGQAYKHKHALEIHIGMHNGINPFQCSFCKKCFTQKGALMRHLPMHTGETPYQCELCGKRFVHHTSYNMHALSHTGKKSYQCHVCDLSLLSTSHLKRHMRVHTGEKPYSCMLCGKRFAERYNLLAHQKIHNTSETTAKDIVKLQNMCNQCNSLYQKGHTCNEHTKVQCNSDNNITTTENVSNYNCNLQSLEQSKLYKLQNKNQQNLKNISSDNNKTWVEINQSKLNCTSNETEFVLLQDSLSQGDATPVTITFNDHKMSVGNKNYNTSLKIIIESSNVSIPINNQVIIDDTHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01513029;
90% Identity: iTF_01513029;
80% Identity: -