Vpen008689.1
Basic Information
- Insect
- Vespula pensylvanica
- Gene Symbol
- -
- Assembly
- GCA_014466175.1
- Location
- CM025344.1:6136278-6137471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0011 0.065 13.2 0.4 2 23 43 65 42 65 0.94 2 9 1.4e-05 0.00083 19.1 4.0 1 23 139 161 139 161 0.94 3 9 5.6e-05 0.0034 17.2 1.7 1 23 189 211 189 211 0.99 4 9 9.2e-05 0.0056 16.5 2.3 2 23 218 240 217 240 0.94 5 9 6.3e-05 0.0038 17.1 0.0 1 23 246 268 246 268 0.98 6 9 0.00017 0.01 15.7 2.2 1 23 274 296 274 296 0.97 7 9 0.00014 0.0085 16.0 5.4 1 23 302 324 302 324 0.97 8 9 3.4e-06 0.00021 21.1 0.4 1 23 330 352 330 352 0.98 9 9 1.7e-05 0.0011 18.8 3.7 1 23 358 380 358 381 0.95
Sequence Information
- Coding Sequence
- ATGTATTATTTTTACGTCAGTAAAAAATACATTTCTTTTTTTAGATGGCAACCAGATGATAACAGTATTATTCAGATTTCCACAATCCAATTAGAAGACTCAAAAATAGAAAGATTACAATATCTTCAATGTGTTCAGTGCGAAATAGTATTCACAGATATTAAATGTCTTATAAATCATATGAATGCACAACACAGTGCTGGAATGCATTATTGTTCTCATTGCAAATTAGCATATAATGGATCAAACAAAGCTTTTGAAGAACACTTAACTACTCACTATAATACCACATATGTTGTTTCCAAACATACGCGAGTAGAAAATCAAATTGCATTGATGGAAGAATCCAATAACGGTGAAGTACAAAAAGAGGAAGAGGTGAATACAGAAGTGTCTTGCAATGAGCAATTATTGTTTACTTGTCACTTATGTAATAGAAGTTATAAGAAGAAAAGTGAATTAAAAAAACATGTAGTTTTACACGATGAATTAATCCAAGCACAAAATCGTGATGAAGCAGAGTTAATACATAAAGCAAAGCAAATTATTAACAATCGTATTTCATATAAATGTGAATTATGTAAAAAAGTTATATTCACAAAACGTGGCTTTTTGCGTCATATGAGGGTACATTCTGGGAAACGTCCATGTAAATGTGAATTGTGTGGAAAATGTTATCGTATTGAACAAGACTTAGCACGTCATATCAGAGATGTTCATGAAGGTTTAAAAAAATATCCATGTGACATTTGTGGCAGAGCATTTGCCAATAAAGGTGCAAAAGATGATCACAGAAGAATACATACAGGAGAACGGCCATATGCTTGTAAACACTGTCCCAAAACATTTCGTACTTTAAATTCTATATACATTCACAATCGTGTACATACTAATTATAAGCCTCATAAATGTTCATATTGCGGTAAATACTTTAGAAGTAGACAACGATTAAATAATCATGAAACAACTCATACAGGTGTAAAAGCGTTTTCATGCGAAATTTGTGGTAAGTCTTTTCCAGTTAAAGGAGAGGTCATGCGACATCATGCAACTCATAATCAAGAAAAACCATTTAATTGTAAAGGTTGTGGTATGAAATTCGGGCAAAAAAGATACTTACGAAATCATATTAAGCAACATCATAAAGAAGAATCTTGTACATTATTAGCAGAATTAACAGAGAAACATAATTAA
- Protein Sequence
- MYYFYVSKKYISFFRWQPDDNSIIQISTIQLEDSKIERLQYLQCVQCEIVFTDIKCLINHMNAQHSAGMHYCSHCKLAYNGSNKAFEEHLTTHYNTTYVVSKHTRVENQIALMEESNNGEVQKEEEVNTEVSCNEQLLFTCHLCNRSYKKKSELKKHVVLHDELIQAQNRDEAELIHKAKQIINNRISYKCELCKKVIFTKRGFLRHMRVHSGKRPCKCELCGKCYRIEQDLARHIRDVHEGLKKYPCDICGRAFANKGAKDDHRRIHTGERPYACKHCPKTFRTLNSIYIHNRVHTNYKPHKCSYCGKYFRSRQRLNNHETTHTGVKAFSCEICGKSFPVKGEVMRHHATHNQEKPFNCKGCGMKFGQKRYLRNHIKQHHKEESCTLLAELTEKHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01514993;
- 90% Identity
- iTF_01513659;
- 80% Identity
- -