Basic Information

Insect: Vespula pensylvanica
Gene Symbol: -
Assembly: GCA_014466175.1
Location: CM025336.1:2274095-2276454[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.0064 16.3 1.6 1 23 301 323 301 323 0.97

2 12 0.003 0.18 11.8 4.0 1 23 327 349 327 349 0.98

3 12 0.0028 0.17 11.9 6.5 1 23 354 376 354 376 0.96

4 12 8.6e-05 0.0052 16.6 2.5 1 23 428 450 428 450 0.98

5 12 0.00069 0.042 13.8 1.4 1 23 455 477 455 477 0.97

6 12 0.00025 0.015 15.2 2.3 1 23 526 548 526 548 0.98

7 12 0.00025 0.015 15.2 0.9 2 23 556 577 555 577 0.97

8 12 8.6e-07 5.2e-05 22.9 2.1 1 23 587 609 587 609 0.96

9 12 0.0002 0.012 15.5 1.6 1 23 615 637 615 637 0.97

10 12 0.00014 0.0084 16.0 0.7 1 23 643 665 643 665 0.98

11 12 4.1e-06 0.00025 20.8 2.0 1 23 671 693 671 693 0.96

12 12 7.4e-05 0.0045 16.8 0.3 1 22 699 720 699 720 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.0064	16.3	1.6	1	23	301	323	301	323	0.97
2	12	0.003	0.18	11.8	4.0	1	23	327	349	327	349	0.98
3	12	0.0028	0.17	11.9	6.5	1	23	354	376	354	376	0.96
4	12	8.6e-05	0.0052	16.6	2.5	1	23	428	450	428	450	0.98
5	12	0.00069	0.042	13.8	1.4	1	23	455	477	455	477	0.97
6	12	0.00025	0.015	15.2	2.3	1	23	526	548	526	548	0.98
7	12	0.00025	0.015	15.2	0.9	2	23	556	577	555	577	0.97
8	12	8.6e-07	5.2e-05	22.9	2.1	1	23	587	609	587	609	0.96
9	12	0.0002	0.012	15.5	1.6	1	23	615	637	615	637	0.97
10	12	0.00014	0.0084	16.0	0.7	1	23	643	665	643	665	0.98
11	12	4.1e-06	0.00025	20.8	2.0	1	23	671	693	671	693	0.96
12	12	7.4e-05	0.0045	16.8	0.3	1	22	699	720	699	720	0.96

Sequence Information

Coding Sequence: ATGAATTCGGGTTATTTCAATTTACCTCTTAATATGGACAGAGTATGTAGAATCTGTCTAACAGAAAGTAGCAATTTATCACCTATTTTCTGTACCGATCAAGAGGTAGATGATTTCTCAGATCTTCCACAAAAAATACAAGTATGTGGTTCAATTGATATTCACGAGCAAGATGGATTGCCATCTTTAATCTGCGATGTTTGTGTTTATAAAGCAAGTGTTGCTCATGAGTTTAGACAACAATGCCAACATTCCAATGCTAGACTGAGAATGTATTATAATAAACCTGAAAAATGCAATGTCATGGATTCGTGTACGCAAACAGATTTTTCTCCATGCATTGATCTACCAAAAAAGACAACAAATGTGCAAGACAATTCTTTTATAAAAGAAGAAATGCAAATAGTATCAAATTCTCAAGACTTCAATAATACTAACAATACTTATACTTCAAATACACCTAGTCTAACTACTACCGAAATCGACATACAAGATGAAAAAATCTTTATGTGTTCTATCGGATTTGAAGGTCCCAAAGAGATTGGTAAAGAACAATGTTCTACTACAGAAAGCAATATTAATCAAAATTCATCCATTGAATCTGCTTCCCAAGTAGATACATGCGATATTTATGAAACAATGGATGTAGATAATAAGCCTCAAGAGGAGCATAGTATTACTAAAGAATCGGAAAAAAATTCTAAACAACAACAAGAAGAAGAACAGTTTTCAAATGAACGCGTGTCCGATGATACAGGGATTGAAAAGGAGACACTTCCACAGAAACGTACGTCAACAAGGAAAACGAAATCAATGCCTAACAAATCTTACAGCGAAGATGAAGGAGATGATAATTATTATGATCCAAGTAGCGACAGTCAAGATTCAGAAGAATTGAAATTCAAGTGCAAAATTTGTTTAAAGCGTTACGCAACACAGAAAGGCTTAAAAAAACATTCTCTTGTCCATGAAAAGAAGCACAAATGTAATATTTGTTTAAAACTGTTTTATAAACAAGAAAATATGGAAAAACATAAAAAGATACATGCATCTAAACCTCATGCTTGCCAATTATGTCATGCCTGTTTTTCTAAGTCTCAGAGTCTTGTACGCCATCTGAAGTCTCATACAGAGAAAGTAAATGATATGATTAAACAAATAAATACCGATGAGCGAAAAGACGACGGTGATTCAAAAAAAGAACCAAAGTGTGAAGATGACACTGAAGATGAAAGTGGTACAGTAAATGAACCAGATGAATTTGAGAATGCTCCTGAATTATATAAATGTGAAATCTGTAATCAGTATTGTTCTTCCTTAAAAAATTTAAAAAGACATGCTCTTGTACATGGGGATAAAAAATATTCTTGCACAGTATGTAAAAAGTGGTTTTTCAGGCCAGACACATTAAAAAAACATGCTGAAAAACATGGGCATGGATTGTTAGATAATTTAGTAGATGATAACAAACTATTTGATTCAGATGATGATGCTTTTCCAAATGATACAACAAATACTTTACCAGAAAATGAAACTGTTAAGAAAGAAGATAGTGAAGAAGATGGATCTGGTGAATACAAGTGCCAACATTGCGATAAAATTATGGCTACTAAGAAAGGCCTTAGGCGTCATGTGTCCATGCATAAGCCTAAAGCTGAACCAGTAACTTGTGAAATATGTAGAAAAGTTTGTGCTAGTCAAGCTCGTCTTGTTCTTCATCAAAGGACACATAAACCCAAGGAAAAAGTGCCACGAGAATACCTATGTCATATTTGTAGCAAAGTATATCCAAGTAATTCATCGCTTACGTATCATATGAGAACTCATACAGGAGTGAAACCACATGTATGCAAAACATGTAATAGTGGATTTACAACAACTACTAGTTTGGCAAATCATATTCGTATTCATACAGGGGACAAACCTTTTGTATGTCATGTTTGTAGTGCAGCATTTGCTGTGAGTTCAGCATTTAGGAGACATTTAACACGGCATACAGGTGAAGCAAATTATCTCTGCAAAACGTGTGGCAAAGCTTTCAAGCGACTTAGTACTCTGAAAGAACATACTTATACTCATTCTGGTGAAAAACCTTATGTTTGTAAAACCTGTGGCGCTGCATATAGTCATAGTGGCAGTTTATTTGCACATCAGAAACGTTGTCGTGTCCAGTATGGTGAAATGGTCGTAGATGAACATCATCATGCTGTTGCACATCATATTCATGTAAATAATGTGCAATCTGCAGTGAGATCACTTACTGTGATAGGGCAGATGTTCTAA
Protein Sequence: MNSGYFNLPLNMDRVCRICLTESSNLSPIFCTDQEVDDFSDLPQKIQVCGSIDIHEQDGLPSLICDVCVYKASVAHEFRQQCQHSNARLRMYYNKPEKCNVMDSCTQTDFSPCIDLPKKTTNVQDNSFIKEEMQIVSNSQDFNNTNNTYTSNTPSLTTTEIDIQDEKIFMCSIGFEGPKEIGKEQCSTTESNINQNSSIESASQVDTCDIYETMDVDNKPQEEHSITKESEKNSKQQQEEEQFSNERVSDDTGIEKETLPQKRTSTRKTKSMPNKSYSEDEGDDNYYDPSSDSQDSEELKFKCKICLKRYATQKGLKKHSLVHEKKHKCNICLKLFYKQENMEKHKKIHASKPHACQLCHACFSKSQSLVRHLKSHTEKVNDMIKQINTDERKDDGDSKKEPKCEDDTEDESGTVNEPDEFENAPELYKCEICNQYCSSLKNLKRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDAFPNDTTNTLPENETVKKEDSEEDGSGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMVVDEHHHAVAHHIHVNNVQSAVRSLTVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01513638;
90% Identity: iTF_01513638;
80% Identity: iTF_01513638;