Basic Information

Insect: Vespula pensylvanica
Gene Symbol: gtf3a
Assembly: GCA_014466175.1
Location: CM025351.1:512103-516471[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.7e-05 0.0035 17.2 0.1 2 23 748 769 747 769 0.97

2 17 6.9 4.2e+02 1.2 0.6 1 19 775 793 775 794 0.91

3 17 1.2 71 3.6 1.1 3 23 803 823 802 823 0.97

4 17 0.00013 0.0078 16.1 1.2 3 23 832 853 831 853 0.98

5 17 0.0023 0.14 12.1 2.0 1 23 860 883 860 883 0.95

6 17 8.1e-05 0.0049 16.7 0.7 1 23 889 912 889 912 0.94

7 17 0.55 33 4.7 0.9 2 23 920 940 920 940 0.94

8 17 1.2e-07 7.2e-06 25.6 2.1 2 23 946 967 945 967 0.97

9 17 1.9e-06 0.00012 21.8 0.2 1 23 973 995 973 995 0.99

10 17 0.00048 0.029 14.3 2.4 2 23 1007 1029 1006 1029 0.95

11 17 0.0067 0.41 10.7 2.5 1 23 1035 1058 1035 1058 0.96

12 17 0.016 0.98 9.5 3.0 3 23 1081 1102 1080 1102 0.95

13 17 0.00023 0.014 15.3 1.5 2 23 1109 1131 1108 1131 0.96

14 17 3.3e-05 0.002 18.0 1.0 2 23 1139 1160 1138 1160 0.96

15 17 0.001 0.063 13.2 2.3 1 23 1166 1189 1166 1189 0.96

16 17 0.28 17 5.6 3.2 2 23 1196 1217 1195 1217 0.96

17 17 0.0081 0.49 10.4 2.6 1 23 1223 1245 1223 1245 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.7e-05	0.0035	17.2	0.1	2	23	748	769	747	769	0.97
2	17	6.9	4.2e+02	1.2	0.6	1	19	775	793	775	794	0.91
3	17	1.2	71	3.6	1.1	3	23	803	823	802	823	0.97
4	17	0.00013	0.0078	16.1	1.2	3	23	832	853	831	853	0.98
5	17	0.0023	0.14	12.1	2.0	1	23	860	883	860	883	0.95
6	17	8.1e-05	0.0049	16.7	0.7	1	23	889	912	889	912	0.94
7	17	0.55	33	4.7	0.9	2	23	920	940	920	940	0.94
8	17	1.2e-07	7.2e-06	25.6	2.1	2	23	946	967	945	967	0.97
9	17	1.9e-06	0.00012	21.8	0.2	1	23	973	995	973	995	0.99
10	17	0.00048	0.029	14.3	2.4	2	23	1007	1029	1006	1029	0.95
11	17	0.0067	0.41	10.7	2.5	1	23	1035	1058	1035	1058	0.96
12	17	0.016	0.98	9.5	3.0	3	23	1081	1102	1080	1102	0.95
13	17	0.00023	0.014	15.3	1.5	2	23	1109	1131	1108	1131	0.96
14	17	3.3e-05	0.002	18.0	1.0	2	23	1139	1160	1138	1160	0.96
15	17	0.001	0.063	13.2	2.3	1	23	1166	1189	1166	1189	0.96
16	17	0.28	17	5.6	3.2	2	23	1196	1217	1195	1217	0.96
17	17	0.0081	0.49	10.4	2.6	1	23	1223	1245	1223	1245	0.98

Sequence Information

Coding Sequence: ATGCAGAATTCAAAGCTTAATAGAGATCATGATTATGGAGAATTAATATTAGAAAATCATAAATACACAGATACCACCAATCAAACGGATATGCTTGAAAATAATTTATTAAAGACTGTTTTGAAGCCTGTAAGAACTGCTTCAACAATAAATAAAGATACATTTGGTGGACAAGTCAAAGATATAAATGAATTAAAAAAAATAACACCTCGTGTAAAACTTTTGGCTCATGATGTAAATAGTTTGAAGGAATTAACAAAAATTTCATTGCAAAATAAATCGTTAAAACAAGAAAAAATATCAATGTTTGAACATACAAGGCAGGAGTTAAAAAAGTATTGCAGAACTTGCGCTGGTTTAAAGCTTCCATTAGTTGATATTTTCAGTGAAAAAGGTATTCAAATGAGGCTAAGCCAACAGATAAAACATTTAGAAGAAATAAATCCACATGATAGTCTATCCACTCAAATGTGTATGGATTGCATTTGCGATTTGAAAATGAGTTACAAGTTTTTTATGCAAATTAAAAAAGCTGAAGTTAAACTGAAATCAATTCATGTTACATTAACTGATACAGTTGCACGCAATATAGAAGCAGAAAAAATGCAATCTTTAGCTAACAATCAAATTAATCAAAAGCAAGTAGAGGAGACTTACGATTGTACTATGGTTCCTGCATCAACAAGCACTGATAATGATGAAACTGTTCCAAAAATATCTGCGATTTATTCTTTAAAGGATGTTCTAAACCCAATACCTGTAGAAAAAAGAGAAAAGGAGAATCCTGATATAATACCTAAAATTGAGTCTGACATATTTGAAGATGTTACAGGTGAACATCATAGTGATGATAACGAATCCATAGAAGAATTTGATCCAGATGATCCACCCTTTCAACCTGATAGCTCTGATGTTGCAGAATCTGACGATGAAATTGAAACTAGCCACGTAGATAGAAGACGAAATACAAATAAGAAGGAAAATGTAAGTAAAGCAAATAATCAATCTTTTGTGTTGCATGATTCATCAGGTAATAATTTAATACAAAATCAAGATGATACAAATCAAGATTCTAATCAAACTGTCTATAAATATGATATGGCATTAAAGGCTTATGTTAAAGTAGACACTGCGCAAGATAATAAATTAAGTTCCAAATTACAAATTGGTCCCAAGATCGAAATTAAAGATAACGAATTTGGGAAAGAAACTCCAAAGCAACCAAATATATTGAAGCGCAGGCTTTTACAGCAAACAAAAAAAGAAGGCTTGGGAAATAATGAAGAGTTAAAATCTACTTCAACTGTATCCGATACTAATGAAAGTCCAAAAGATCCAAAAATTCAAAAATTAGATATACAAAACCCTTTAAACATTAACGATTCTCAAGAAGATGGAATTATGTATGTTACTGTAAAAGGTTCTAAACCAAATGAGATATTATTAGTAAAAGTTAAAAAGATGGATAAACCACTTGAAAAGAAAGATGATAAAAATTCGAGTAAGGCAAAAGCTTTTGATTTTAAACCAGTTGGCAAAATTTTAAAAAAATATGAAACATTAGCAACAAAGGAAAAGAATTTGTTCACAGAACGTACAAAAAAACTGGATAAGAGAGAACAGATCATAGAAGAACAAATAGAAGAATACAAGAAAAAACGTGAAAAAGTTTTAGGTAGTCAGTCAAGTTTAACAATAAAAAGTGAAGAAACTCCAAATCGATTTATTAAACGAGTCGAAAGTTCTGACGATCAAAAACCAGTTGTATACGAAGAAAATAATTTAAATGTAAAAGTAGAATCCGATGTAGATAGTAGTACAATGAATAGTACTATTATCAAGGATGAAAATAATATTTCAGATGTTTCTGATACTTTACAAGATAAGTCAGTCCAAGAAAAAGCATATGTGAACACAAAGGAGTATTTATCGCGTTTGGCAAAACTTAAATTAAAGTGGGAAGAAGCAAAGAAAAAGAAAGAATACTTACAGAAAGAACTTGATCAGTCTTATACAGAAGGAAATATGGAAAAATTATCACGTATTCTAGGAGAAAAAGAAAAGAATTTGTTGGAGTTTCAAGATTATCTAAAGCAAAGAAAAATCGTGATTACCAGATTAAAAGATGAAGACATCATTTCGCTTTATGAAGATAGAAATAACACATCTCTCCAAAAAAGTTTACCAGACTTGATCGATGAAACAACACCAGCAGATTATATACCAGAGGAACATTATTTGGAGTGTGATTATTGTCCAGAAACATTTGCTTCGAAGGAAGTTCTTGAAGATCACTTAAAAACGCATGATTTCAAAATTATGCATTATTGCGAAGACTGTATGGAAGAATTTCCTACAAACAAAGCAAAAAGAAATCATAATGTGGTATGTTTTAAAAAATTATTATGTAAGTATTGCGACGTAATGTTAGATTCAAAGGGCAAAAAAAGACAGCACGAGCAAAAACATTGTGACAACATGTTTGGCCAATTATGTGACATTTGTGGCGAAAAATTCAAACATCAAGGAACGCTCGATCAACATGTTAAAACGCAACATATGAGCTGGGAAAAAATTTATCAATGTCCAAAATGTCCGAAAAAGTTTGCTTTCAAACAAAAATTGAGCTTTCATCTGAAATCTGTACACACAACATTGAGAGCTTATTTATGTGAAGATTGTGGGGCAGACTTTAAAAATCCTGCAAGTCTCAGACATCACCGAATTCGTAAACATCAACCTGTAGGGAACAAAAGGGAATGTCCAGTTTGTCATAAACTAGTACCATTTTATAGTCTTTCAAAACATATGTATACTCACAAAGCCTACACTATACAATGTCCGCATTGCGATAAAATGTTTAAAAATAGTTCAACGTTGAAACAACATGTAAGGATACACGAAGATCAACGGCAATATCGTTGCGATACTTGCGGCGTTGGATTTAATAGGAGGGATGGATTGAGGCTCCATATGAGAGTTCACGAAAAAACTGATAGCAGAGGATTGAAAGAATGCTCATGTCAAGTGTGTGGTGAGAAGTTTCCAAATCATTCTACGCTTGTAATACATAGAAATCGCGTACACAAAGATGGAAGGCAATATACATGCCATATATGCAATAGATCCATGATTTCAACGAGATCATTAGAATGGCATATGTCTCATATACATAACGAATCACTACCTGGCATTGTGAAAGAAGATGTAGATGGATTACCAGAAAAGAGAAGAGTTGCTTGTTACCATTGCAATAAAACTTTCAAAACAGAGATGATTTTGAGAACGCATATAAAAAATACTCATATGGAGAAAGATCCTATGAAGTGTTTGGATTGTGATATGACATTTACTTCTGAAGTTAGACTGAGGCATCATATGATGGTAACTCATAATAGGCTGGAAGGCACATTACCGTGTCCTCATTGTCCAAAAAGATTTGTAAATCAGCTTAGATTAAAGACTCATATGATATCTCATTCTGAAGAGAGGCCATATACATGCGAAATATGTGGTTTCAATTTAAAAACAAAAATACAACTCATCAAGCATCATCAAAATAGACATAGCGACGAAAGACCGTTACAGTGTAGATACTGTCCTTGGAGGTGTAAGCAAGTGAGCGCGCTTGTTTGTCATGAAAGAACTCATACGAACGAACGACCGTATTCGTGTAGTGTTTGTAGACAACGTTTCAAGTATTTGGGTGATAAGAACAAACATGAAAGACGTCATGAAAGTTTAGGAGGATCTGGATTTAAAAGAATAGTACCTGGCAGAAATATCAAGCATTCGAAAGTTCAAGAGGAGACCTCCTGTTCTGAACAAGAACAGGAAGAACTGACACATGTAGATGCACAACTTACGGAAGGCCAATATGAAGAACAATCAAGTCAACCGTTTGAAGAAAAGTTTGTGAAAGAGCAAATCGTAAAATTTGAAGAACCAGAAATTACAGAGGAATATGAGCAGGTCTATGAACAGGATTACGAAGAAACGTCGAGGGAAGCTTCCGAAGCCGCAGAAGTTATTATGAACATGGAGGATACTACTGTGTATACAGAAGAAGTAACTGCAGACAACATAGAATCTGCAGAGATAATGGCAGATGAAATGATTACAAATGAGATTTTACAGAGTGGGACTGTGGTACATTTGCAACAACAAGATGATTCTGGAAAAATTCAAGTTATTCCTGTAATGTTATCTTTACCAGATTTATCTGACACAAATACAGAAGTCAATTTAGCGACTGCTTCTATAATGTATAACAATTAG
Protein Sequence: MQNSKLNRDHDYGELILENHKYTDTTNQTDMLENNLLKTVLKPVRTASTINKDTFGGQVKDINELKKITPRVKLLAHDVNSLKELTKISLQNKSLKQEKISMFEHTRQELKKYCRTCAGLKLPLVDIFSEKGIQMRLSQQIKHLEEINPHDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHVTLTDTVARNIEAEKMQSLANNQINQKQVEETYDCTMVPASTSTDNDETVPKISAIYSLKDVLNPIPVEKREKENPDIIPKIESDIFEDVTGEHHSDDNESIEEFDPDDPPFQPDSSDVAESDDEIETSHVDRRRNTNKKENVSKANNQSFVLHDSSGNNLIQNQDDTNQDSNQTVYKYDMALKAYVKVDTAQDNKLSSKLQIGPKIEIKDNEFGKETPKQPNILKRRLLQQTKKEGLGNNEELKSTSTVSDTNESPKDPKIQKLDIQNPLNINDSQEDGIMYVTVKGSKPNEILLVKVKKMDKPLEKKDDKNSSKAKAFDFKPVGKILKKYETLATKEKNLFTERTKKLDKREQIIEEQIEEYKKKREKVLGSQSSLTIKSEETPNRFIKRVESSDDQKPVVYEENNLNVKVESDVDSSTMNSTIIKDENNISDVSDTLQDKSVQEKAYVNTKEYLSRLAKLKLKWEEAKKKKEYLQKELDQSYTEGNMEKLSRILGEKEKNLLEFQDYLKQRKIVITRLKDEDIISLYEDRNNTSLQKSLPDLIDETTPADYIPEEHYLECDYCPETFASKEVLEDHLKTHDFKIMHYCEDCMEEFPTNKAKRNHNVVCFKKLLCKYCDVMLDSKGKKRQHEQKHCDNMFGQLCDICGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMYTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGIVKEDVDGLPEKRRVACYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCDMTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNIKHSKVQEETSCSEQEQEELTHVDAQLTEGQYEEQSSQPFEEKFVKEQIVKFEEPEITEEYEQVYEQDYEETSREASEAAEVIMNMEDTTVYTEEVTADNIESAEIMADEMITNEILQSGTVVHLQQQDDSGKIQVIPVMLSLPDLSDTNTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01512335;
90% Identity: iTF_01512335;
80% Identity: -