Basic Information

Insect: Vespula pensylvanica
Gene Symbol: su(Hw)
Assembly: GCA_014466175.1
Location: CM025346.1:5643220-5646411[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0042 0.26 11.3 0.2 1 20 61 80 61 82 0.95

2 13 1.5e-05 0.00092 19.0 0.7 1 23 160 183 160 183 0.96

3 13 0.0019 0.12 12.4 4.0 1 23 189 212 185 212 0.93

4 13 2.8e-05 0.0017 18.2 3.6 1 21 218 238 218 239 0.95

5 13 3.2e-08 2e-06 27.4 1.5 1 23 250 272 250 272 0.97

6 13 0.00065 0.04 13.9 0.9 2 23 282 303 281 303 0.96

7 13 0.00032 0.019 14.8 0.5 2 23 310 331 309 331 0.97

8 13 2.4e-06 0.00015 21.5 2.3 1 23 337 359 337 359 0.99

9 13 4.8e-06 0.00029 20.6 1.8 1 23 365 387 365 387 0.94

10 13 9.6e-06 0.00058 19.6 0.9 1 23 393 416 393 416 0.94

11 13 2.3e-06 0.00014 21.6 0.4 1 23 422 444 422 444 0.97

12 13 4e-07 2.4e-05 24.0 1.0 1 23 450 472 450 472 0.99

13 13 5.7e-05 0.0034 17.2 1.5 2 23 479 501 478 501 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0042	0.26	11.3	0.2	1	20	61	80	61	82	0.95
2	13	1.5e-05	0.00092	19.0	0.7	1	23	160	183	160	183	0.96
3	13	0.0019	0.12	12.4	4.0	1	23	189	212	185	212	0.93
4	13	2.8e-05	0.0017	18.2	3.6	1	21	218	238	218	239	0.95
5	13	3.2e-08	2e-06	27.4	1.5	1	23	250	272	250	272	0.97
6	13	0.00065	0.04	13.9	0.9	2	23	282	303	281	303	0.96
7	13	0.00032	0.019	14.8	0.5	2	23	310	331	309	331	0.97
8	13	2.4e-06	0.00015	21.5	2.3	1	23	337	359	337	359	0.99
9	13	4.8e-06	0.00029	20.6	1.8	1	23	365	387	365	387	0.94
10	13	9.6e-06	0.00058	19.6	0.9	1	23	393	416	393	416	0.94
11	13	2.3e-06	0.00014	21.6	0.4	1	23	422	444	422	444	0.97
12	13	4e-07	2.4e-05	24.0	1.0	1	23	450	472	450	472	0.99
13	13	5.7e-05	0.0034	17.2	1.5	2	23	479	501	478	501	0.94

Sequence Information

Coding Sequence: ATGGAGGAAATTATAGAAATTGTAAAAGTTGAGGAAGAAATAATACTGAATGATGAAACTTCTCAAATTCTTCTTGATGCAGATGGTTCAGAGAAAGAAGTTGTGATAACTACGGAAGATGTATCTGGTAATGTAACAGCTATTTCTCAAAGCAGCCAAATTATACAAATTATAACAGATTATGAATGCGTAACATGTCACCGCATTTTTCAATCAGAAGATATGCTAAAGGAACACTTAGATGTCTGCAGAGAAGAAGATGATTCTACAAATATATTAGAATTAGGAAATTTAGATAACTATGATTCTGAGGATGAAGATGATGCTGATGATCCAGATTACGAATTCAATGACACAAGTATTGAAGATACTAAAGCTCAAAAGAATAACAATGAAAAGCCAACAATTAAACCTGTACCAGATACACAATGCCACTGCTGTGCTGAAGATTTAAAAACAGCACATAGTGGTGGTGAATTTAAATGTTTAGAATGTGAACTATCATTTAAAAAAAATTCTTCTTTAGAAAGACATAAAATAGTTATACATTGGAAATGTGAATCTTATACCTGTATTAATTGTGGATCAACCTTTCGTGATAAAAAATCATTAAATAAGCATCGTTATACTACACATGTCAATCGTAACATATATAAATGTGATACCTGTGATACATATTTTTCGCGAAATTATCATTTAAAACGTCATAAAATGCAGTCTGGTTGTCATGGAGATATACGCAAAACTTTTGATTGTCAAGTTTGCCAAAAAGTTTTTACACGAAAAGATAATCTACGTGAACATTTGCGCACACATGCTGGAGCACCTCAAAGGCAGAAAAAACCATGTAAATATTGTTCTAAGGAATTCTTTACTACTCAACAATTAATAATACATGAACGATTACACACTGGAGAAAGACCAGTACAATGTGATTTATGTCCAAAGACATTTCTGTCTTCTCTTGCATTAAAAAAGCACCGTCGTGTACATACAGGAGAGAAGCCATTTGAATGCAAATATTGTCAGAGGAAATTTGCGGCCCGTGAAACATTAAATCGTCATCAAAGAACGCATACTGGAGAAAAACCTCACGTTTGCCAGTACTGTGGCAAATCGTTTATCCAAGCAGCACAATTAAGAGCACATGTATTTCATCATACTGGTGAAAATGGATTTTATTGTGATATTTGTGGTAAAGCATTTAATAGAAAAGCTCGATTGAATGTACACAAAAAATTTGTACATGAAGGTGCAACACCATTTACATGTGAAATATGTGAAAAAGGTTTCACACGGAGAGAAGATTTAGCAAAGCATACATTATTGCATACAGGAATCAAACCATTTAAATGCGATAAATGCTCAAAGGCCTTTTCTGCAAAATCTTCATTACAAGCCCATCTCAATACTCATAGACGTGAGCCACCTCAATCATGCGTTGAGTGTAATCGTGTCTTTATAAGACAAGACTGTTTAATGAGACATGTTCGAGCTAAACATCGAGAACTTCTGGAGGATGTAATGGATGAAGTTGAAAGAAAGCACTTACAAACACAATTATTCAATATTGCTTCTATTGCTGCAGAAAAAACAAAAGCAGGAGAATCTAAAGTACTTTCTACAGATGAATTGCTAAAAGCCATTGCAGATCTTTTAAGGATACTTATTGATGAAGAAACTTTACAGTTATTTGGTTGGCCTAATGCTCCTATTCAAGATATTTTAGAGGCCGTGATTAGACGTTGTGGTCATGAACCTCTAACATCAGATAGTTCTTTACTTTTCAACGAAAGGTTAAGAGCGAACGTAAAACTTTTATTTACAGTGGTTATTGAGGATGAAACTGTAAAGTCGTTATTAACAACTAAAACGGTAGACCATGTTATTCTTCATGTTTTGGAAATTTCGCAAAAATGA
Protein Sequence: MEEIIEIVKVEEEIILNDETSQILLDADGSEKEVVITTEDVSGNVTAISQSSQIIQIITDYECVTCHRIFQSEDMLKEHLDVCREEDDSTNILELGNLDNYDSEDEDDADDPDYEFNDTSIEDTKAQKNNNEKPTIKPVPDTQCHCCAEDLKTAHSGGEFKCLECELSFKKNSSLERHKIVIHWKCESYTCINCGSTFRDKKSLNKHRYTTHVNRNIYKCDTCDTYFSRNYHLKRHKMQSGCHGDIRKTFDCQVCQKVFTRKDNLREHLRTHAGAPQRQKKPCKYCSKEFFTTQQLIIHERLHTGERPVQCDLCPKTFLSSLALKKHRRVHTGEKPFECKYCQRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDICGKAFNRKARLNVHKKFVHEGATPFTCEICEKGFTRREDLAKHTLLHTGIKPFKCDKCSKAFSAKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHVRAKHRELLEDVMDEVERKHLQTQLFNIASIAAEKTKAGESKVLSTDELLKAIADLLRILIDEETLQLFGWPNAPIQDILEAVIRRCGHEPLTSDSSLLFNERLRANVKLLFTVVIEDETVKSLLTTKTVDHVILHVLEISQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01513619;
90% Identity: iTF_01233804;
80% Identity: iTF_01513619;