Basic Information

Insect: Vespula pensylvanica
Gene Symbol: -
Assembly: GCA_014466175.1
Location: CM025339.1:4690803-4696923[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.0061 0.37 10.8 0.2 2 23 50 71 49 71 0.97

2 29 0.0023 0.14 12.1 0.8 1 23 79 101 79 101 0.96

3 29 0.14 8.6 6.5 1.1 1 23 108 130 108 130 0.98

4 29 1.6e-05 0.00097 18.9 0.4 1 23 136 158 136 158 0.98

5 29 0.00016 0.0098 15.8 0.6 1 23 164 186 164 186 0.97

6 29 0.00014 0.0086 16.0 5.4 1 23 197 219 197 219 0.97

7 29 3.4e-07 2e-05 24.2 0.2 1 23 228 250 228 250 0.99

8 29 5.7e-06 0.00035 20.3 1.1 1 23 256 278 256 278 0.98

9 29 4.7e-05 0.0029 17.5 5.3 1 23 284 306 284 306 0.98

10 29 0.0013 0.079 12.9 0.1 1 20 350 369 350 371 0.95

11 29 2.6e-05 0.0016 18.3 0.8 1 23 388 410 388 410 0.99

12 29 9.1e-05 0.0055 16.6 3.0 2 23 445 466 444 466 0.94

13 29 0.00023 0.014 15.3 2.2 1 23 470 492 470 492 0.97

14 29 0.00011 0.0067 16.3 1.0 3 23 500 520 499 520 0.97

15 29 5.1e-06 0.00031 20.5 2.5 2 23 527 548 526 548 0.96

16 29 0.12 7.3 6.7 2.8 1 19 557 579 557 581 0.73

17 29 0.16 9.9 6.3 0.3 3 23 587 606 586 606 0.95

18 29 1.1e-06 6.4e-05 22.7 1.3 3 23 614 634 613 634 0.98

19 29 3.2e-07 1.9e-05 24.3 1.9 1 23 640 662 640 662 0.99

20 29 0.0001 0.0064 16.4 5.7 1 23 739 761 739 761 0.95

21 29 0.0027 0.17 11.9 1.8 2 23 774 796 774 796 0.96

22 29 1.6e-05 0.00095 19.0 3.7 1 23 802 824 802 824 0.98

23 29 0.074 4.5 7.4 0.4 1 23 828 850 828 850 0.97

24 29 5.7e-06 0.00035 20.3 1.5 3 23 858 878 856 878 0.97

25 29 7.2e-05 0.0044 16.9 0.1 1 23 884 906 884 906 0.98

26 29 0.1 6.2 7.0 0.9 1 23 912 934 912 934 0.97

27 29 5.2e-07 3.2e-05 23.6 0.2 2 23 941 962 940 962 0.97

28 29 1.5e-06 9.1e-05 22.2 0.6 1 23 968 990 968 990 0.98

29 29 1.6e-07 9.5e-06 25.3 1.9 1 23 996 1018 996 1018 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.0061	0.37	10.8	0.2	2	23	50	71	49	71	0.97
2	29	0.0023	0.14	12.1	0.8	1	23	79	101	79	101	0.96
3	29	0.14	8.6	6.5	1.1	1	23	108	130	108	130	0.98
4	29	1.6e-05	0.00097	18.9	0.4	1	23	136	158	136	158	0.98
5	29	0.00016	0.0098	15.8	0.6	1	23	164	186	164	186	0.97
6	29	0.00014	0.0086	16.0	5.4	1	23	197	219	197	219	0.97
7	29	3.4e-07	2e-05	24.2	0.2	1	23	228	250	228	250	0.99
8	29	5.7e-06	0.00035	20.3	1.1	1	23	256	278	256	278	0.98
9	29	4.7e-05	0.0029	17.5	5.3	1	23	284	306	284	306	0.98
10	29	0.0013	0.079	12.9	0.1	1	20	350	369	350	371	0.95
11	29	2.6e-05	0.0016	18.3	0.8	1	23	388	410	388	410	0.99
12	29	9.1e-05	0.0055	16.6	3.0	2	23	445	466	444	466	0.94
13	29	0.00023	0.014	15.3	2.2	1	23	470	492	470	492	0.97
14	29	0.00011	0.0067	16.3	1.0	3	23	500	520	499	520	0.97
15	29	5.1e-06	0.00031	20.5	2.5	2	23	527	548	526	548	0.96
16	29	0.12	7.3	6.7	2.8	1	19	557	579	557	581	0.73
17	29	0.16	9.9	6.3	0.3	3	23	587	606	586	606	0.95
18	29	1.1e-06	6.4e-05	22.7	1.3	3	23	614	634	613	634	0.98
19	29	3.2e-07	1.9e-05	24.3	1.9	1	23	640	662	640	662	0.99
20	29	0.0001	0.0064	16.4	5.7	1	23	739	761	739	761	0.95
21	29	0.0027	0.17	11.9	1.8	2	23	774	796	774	796	0.96
22	29	1.6e-05	0.00095	19.0	3.7	1	23	802	824	802	824	0.98
23	29	0.074	4.5	7.4	0.4	1	23	828	850	828	850	0.97
24	29	5.7e-06	0.00035	20.3	1.5	3	23	858	878	856	878	0.97
25	29	7.2e-05	0.0044	16.9	0.1	1	23	884	906	884	906	0.98
26	29	0.1	6.2	7.0	0.9	1	23	912	934	912	934	0.97
27	29	5.2e-07	3.2e-05	23.6	0.2	2	23	941	962	940	962	0.97
28	29	1.5e-06	9.1e-05	22.2	0.6	1	23	968	990	968	990	0.98
29	29	1.6e-07	9.5e-06	25.3	1.9	1	23	996	1018	996	1018	0.99

Sequence Information

Coding Sequence: ATGAAAGCTCAGGAACAACAGCAATGCGGTATCAACGAAACAAAAAACGTCTTTAGCCCTGAAAGCAGCAACCCGTTGATCAATGATCCATTGGACGTAGCGAAGATGGAAAATGCTGAAGTAATGATGACCGAGGAAACAATACTTCGATGCACCTTCTGCGGCGACGTATTCGTGGACGAGCACGCTTTAGTTTTACATCTACAAAGTCACGAACAGGTACCGGACGAATCGTTCGTTTGCGAGCACTGTGGTTGCAATTATCCAACGTCATTGGCACTGATAGAACATCAGGAGGAACACGCGATACCGGAAAAGAATTATAGTTGCGAATCTTGCGATTACGTCACTTTACATCGACCCAGTCTCGTTATTCATCAAAAACGTCATGGCACTCAGTTAAGGTATCAATGCGAGATTTGTGGCCTTGGTTTCACGACACGTAATAGTTATCAAGATCATCAGCTTTTGCATTCTCGCGAAAAACCGTTCCAATGTGAAATTTGTAACGCCACATTTCGCTATCGTCAGGGTCTTAGATTACACGCTAAACTACATCAACCTGATTACGTTCCACCTCAGAAGAAACATCATTGCGAATTGTGTAACAAGCGTTTCTCTAGGAAACAAGTATTATTGGTGCATATGAAGACTCATGGTAACGTAGGACCGTCCAATGAATACGTCTGTCCTATCTGTGGTAAAGCTGTCTCTAGTAAAACTTATTTGACGGTACACTTGCGTAAACATACCGGTGAGAAACCACACGTTTGTGATCTTTGTGGAAAAGGTTTTATATCGCAGAACTATTTGAGTGTTCATCGACGCACGCATACAGGCGAACGACCTCACAAGTGTACACACTGCGAGAAAAGATTCACACAACGTACCACTTTGGTCGTACACTTGCGTGGACATACCGGAGACAGACCGTATACAAGTATTGCAACGACAGTACGAACGAGATCATCACGTCAACAAGACGCGAAAAATGATAAATCTTCGATCGTTGTAGAACAAGGGAACGCTACTCGCTTTAATTTCACGTATCAATGTGAATCCTGTAACGAGGAATTCAAGACGGAAGCGAATTTGTTGATGCACCGTACTGAAAGATCGATACTTAGAACACGAGAAGCTTTGCGTATGGCTGAAAAAAAATACGAGTGTGACAGTTGCGGTGAAAAGTTTGTCAAAAAATTGTTATTGATCAAGCATCGGCGTACACATTGCAAGGATATCGTCGAACGAAAGAAACAAAAAAATCGAGAAAAGATAACGAAATTAAAATCGAAGCAACGACTGATAACTGAACCGAGTTCTGGACCGATCGAATGTAACATATGTCATAAGGTATTCAAGAAAAAAAAGTATTTGAACGTTCACAAGACTCTTCATGGTGCACCACACATCTGTCACGTTTGTGGGGCCAAGCTTACGTCCGAGTATTACCTAAAAATTCACATTAGACGTCACAACAAGGAGTTCACCGAGTTCTGTAAGATCTGTAACAAAGGATTTTATCTGAAAGCGACCTTGAAGACTCACATGAGCGTACACACCGACGACAAGCCGTGCACTTGTGAAATCTGTAACAAATCCTTCGGCAATCGGGTTTACTTAAGGAGTCATATGAAAATTCATAGTCAACCTGGTACCAGGAAGAAGTACAAGTGTGATATTTGTGGGTTCGAGACTTTCTATAGTTATTGTTATAAGGAACATCTTTGGACGCACACAGGCGAGAGTCAAGTTGCTTGTGAAGTTTGTGGGAAATTGATAAGAAGACAATACATGAAGACCCACATCAGAATACACACAGGCGAAAAGCCTGAGATTTGTGAGTTTTGTGGGAAAGCGTTTAGTTCGAGAAAGTATTTGATCAAGCATCGACGTACTCACACCGGTGAGAGACCGTACAAATGTAAAATTTGCGAGAAGAGATTCACACAACGTGGCACTTTAAGTGCACATCTTCGCAGACACGACAGCACCAAGTGCAACAGGAGAAAACACGGTGGATGTACAATGGAACTATCTAAACGCGAAAACGATGAGTTGGAGAATATTGAAAACGAAGAAATTATGATGAACGATCCTTTACGATATTCAACGAAAACAAGAAAGATATATTGCAAATCGGAGATACAAAGAAACGAAAGGGATACACGTTATCATAGTAAGTGTCCATCGAACAGGAAATATTCGACGATTTATCAATGTGACGTTTGTGGTAAGAAATTCCGAAAGAAGTTTCAACTTCACAAGCACAAATACGAGCACGAGAATAAATCCGAAGAAAGTATGGAGTACGATAATCGTTGCGAAGAATGTGATAGGGTATTTCTTAACGAGAAGAAGTTACATAAACATATGATCAAGGCTCATCAACAGGAGAAACCATATCAGTGTGCTCTCTGTGGTAAATGTTTCAAAACCGAAGAATTTTTGAAGACACATTTGAAGCAACACAACAAACGTTTTACTTGTGATATATGCGGAGTCTCCAAAGTGTCCGGATACGATTTGCGTTTGCACAAAAAGAAGCACAATCAGGAATACGTGACTCACTGTGAGATTTGTGGTAAAGGATTTTACACGAATCAAACGTTGGAGAGACATTTGTTAACTCATACCGGTGAGAAACCATTCATTTGTAAAATTTGTAATACTCCTTATGCTAGTGCAGCTTATTTGAATATGCACATCAAGTCTCATGGTCAACGGGAGAAACACAAGTGTAATATCTGCAATTTTGAAAGTTATTGGAAGGCTGCTTTGAAGGTACATTTGAAGATCCACAGTGGTGAGAATCAAATAACATGTGAAATATGTGGAAAATCGGTGTCGAGTAAAACCTATTTGCAAATTCACATGCGAATACATTCCGGTGAGAAGCCACACGTTTGCGAAGTATGCGGAAAAGCATTTAGCGTTAGGAAATATCTCGTTGTACATTTAAGAACGCACACAGGAGAAAAACCTTACGAATGTAAAGTCTGTCAGAAGAGATTTACTCAACAAGGGTCGTTAAATTCGCACATGAAGTCGCACAGTGAAAGCAAGTAA
Protein Sequence: MKAQEQQQCGINETKNVFSPESSNPLINDPLDVAKMENAEVMMTEETILRCTFCGDVFVDEHALVLHLQSHEQVPDESFVCEHCGCNYPTSLALIEHQEEHAIPEKNYSCESCDYVTLHRPSLVIHQKRHGTQLRYQCEICGLGFTTRNSYQDHQLLHSREKPFQCEICNATFRYRQGLRLHAKLHQPDYVPPQKKHHCELCNKRFSRKQVLLVHMKTHGNVGPSNEYVCPICGKAVSSKTYLTVHLRKHTGEKPHVCDLCGKGFISQNYLSVHRRTHTGERPHKCTHCEKRFTQRTTLVVHLRGHTGDRPYTSIATTVRTRSSRQQDAKNDKSSIVVEQGNATRFNFTYQCESCNEEFKTEANLLMHRTERSILRTREALRMAEKKYECDSCGEKFVKKLLLIKHRRTHCKDIVERKKQKNREKITKLKSKQRLITEPSSGPIECNICHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCKICNKGFYLKATLKTHMSVHTDDKPCTCEICNKSFGNRVYLRSHMKIHSQPGTRKKYKCDICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKTHIRIHTGEKPEICEFCGKAFSSRKYLIKHRRTHTGERPYKCKICEKRFTQRGTLSAHLRRHDSTKCNRRKHGGCTMELSKRENDELENIENEEIMMNDPLRYSTKTRKIYCKSEIQRNERDTRYHSKCPSNRKYSTIYQCDVCGKKFRKKFQLHKHKYEHENKSEESMEYDNRCEECDRVFLNEKKLHKHMIKAHQQEKPYQCALCGKCFKTEEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFICKICNTPYASAAYLNMHIKSHGQREKHKCNICNFESYWKAALKVHLKIHSGENQITCEICGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLVVHLRTHTGEKPYECKVCQKRFTQQGSLNSHMKSHSESK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -