Basic Information

Transcription Factor Domain

TF Family: Runt
Domain: Runt domain
PFAM: PF00853
TF Group: Beta-Scaffold Factors
Description: The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia [1]. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene [1]. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction.In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.2e-72 3.6e-69 229.7 0.0 3 129 18 144 16 144 0.98

2 2 1.6 4.9e+03 -3.5 0.0 53 78 300 325 298 326 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.2e-72	3.6e-69	229.7	0.0	3	129	18	144	16	144	0.98
2	2	1.6	4.9e+03	-3.5	0.0	53	78	300	325	298	326	0.79

Coding Sequence: ATGCATCTACCGGACGGACCTTTAGGGATCGACAGCTTCAGCGCGATTCGCGAAACTCTTGGCGCTTGTCACGGTGAACTCGTACAGACCGGAAGTCCAGCGATACTTTGTAGCGCGTTACCATCGCATTGGAGGTCGAACAAGTCCCTTCCTGTGGCGTTCAAGGTCGTTGCACTCGACGAGGTCAACGACGGCACGTTGGTCACGATCAGGGCAGGAAACGATGAGAACTGTTGCGGCGAACTTAGGAACTGCACGGCGGTCATGAAGAATCAGGTTGCCAAGTTCAACGATCTGAGATTCGTCGGTCGTAGCGGCAGAGGTAAATCCTTCTCATTGACAATACAAATCAGTACGGTACCTTTCCAAATTGCTACATACAACAAGGCGATCAAAGTAACCGTGGACGGACCAAGAGAGCCCAGATCTAAATCAAATTATCAGTATGGACCTGGATTCCATGGACTTGGTTTACTCAATCCGTGGTTGGATGCCGCTTATTTGGGCCACGCCTGGCACTTTTCTCATCCTGCATTGGAAGTAAATTCTTTGTTGATTCCAGGAACACTTCCAATACCACCAACGGATTTATTTCCACCGTCGTTCCCACCAACGACCGTACTACCCACAACTTATCCCTTTGATCACATGAAATATCCAACGGAATATACGACGTTACATGGGAAAACAATGTCGACTATTTCGACTACGACGACGACGACAGCCTCAACGATACCAAACAGTCCATCAAGAACACCACCGAGAAGTCCGAGCGAGTCCGAGAGCGAGGTAACAGCCGAGGAAGTTCGTAGCAGTGCCTTCGTCCCGATTAGGCTGAACACCCTACCACCTCACCAGTCTGTCACAACAAACCCGTCCTCGTCTTCTCCAGAAAGGATCACGCTTAGAGCGAAACCGACGGAAGGTGTGAAGAACGAATTAAAAGCACCGACGGCACTAATTTCTCAAAGAATTTCACCAAAGAGAATCTCATCGCCGACCAAGATATCCTCGTCTACACCAGCGAAACCCGTTTGGAGGCCTTACTAA
Protein Sequence: MHLPDGPLGIDSFSAIRETLGACHGELVQTGSPAILCSALPSHWRSNKSLPVAFKVVALDEVNDGTLVTIRAGNDENCCGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFSLTIQISTVPFQIATYNKAIKVTVDGPREPRSKSNYQYGPGFHGLGLLNPWLDAAYLGHAWHFSHPALEVNSLLIPGTLPIPPTDLFPPSFPPTTVLPTTYPFDHMKYPTEYTTLHGKTMSTISTTTTTTASTIPNSPSRTPPRSPSESESEVTAEEVRSSAFVPIRLNTLPPHQSVTTNPSSSSPERITLRAKPTEGVKNELKAPTALISQRISPKRISSPTKISSSTPAKPVWRPY

Sequence clustering based on sequence similarity using MMseqs2