Vger001744.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- -
- Assembly
- GCA_905340365.1
- Location
- HG996529.1:4211275-4218258[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.014 0.87 9.9 0.3 2 23 556 577 555 577 0.95 2 10 2.8 1.7e+02 2.7 0.7 3 19 716 732 715 735 0.94 3 10 3 1.8e+02 2.6 0.1 2 23 754 775 753 775 0.94 4 10 0.15 9.2 6.7 2.8 1 21 849 869 849 870 0.93 5 10 8.3e-05 0.0051 16.9 0.6 3 23 903 923 901 923 0.95 6 10 0.85 52 4.3 0.1 1 23 943 965 943 965 0.95 7 10 0.01 0.63 10.3 0.8 1 21 972 992 972 993 0.91 8 10 0.015 0.91 9.8 5.3 1 23 1015 1037 1015 1038 0.95 9 10 4.8 2.9e+02 1.9 0.9 1 16 1820 1837 1820 1845 0.63 10 10 0.078 4.8 7.6 0.7 1 23 1847 1869 1847 1869 0.95
Sequence Information
- Coding Sequence
- ATGAAagAGTCTATTGAACAACACAAACATTttcctataaatatattacctaCAAAGACTATAGATAATTCTCACAAAGATTTTACAAAACAAAGTAATATCAGCACAGAACTTGAATTAAATTCATGTATTTTACCATCAAAGTATGAACAGCCTAAAAATTCAAAAGTGCTTTTagtgaaattagaaaaattggGAATTTCTCTTAAAGAACAAAATGTAGTTTCAAAAGTAGAACATTCAATAGCACAATATATTGATTACTCTAAAATAAACTTCTTTAATCATTCCAGTAATGTATTTGCTCATAATAGTGAAGTTAGTAGTGCAATTAGTGAATGTATTAATGAAGCTTTAGCAAAATTGAAtccttttgaaaaagaagtaatgatcaaatatcttttatccAAACATGCTACATCAAATGCATTAACTATACAATTAGAACaaaactcttcttcttcaaaaaGGATTTTACAGgatgtatataatttagaaaaattttcacaGATATTTTCATGTGAAAATGTATGGTTAAAATCAACAGAAAACATGAAATATCCAGAAATATGTACATCATCAATATATGAAATAGAAGGAACATCTAATTTATCAAAACTACCACAGATTATTCAAGATGAAATTATCTCCCCACAAAGGATGATATTAAAAACACATTTACAAAGATATCTAGAAAGATTTTCCAGAAGTTCTTCTCTAGCAGAAGTTAACTCAATGACTGTGTcagatgaaatattaaaaagaagttcaaaattaaaggaaattcAGATATTACCACTACTGATTACAGAACAGAATATTTCTCCAAAAAATTCTAACGAGacgttaaaattaataagtgcaattgattatgaaaatataacaattcTACAAAATTATGAAAGAACCCTGATTAGTAATGACGAACAAAATGCATTACAAATGAATACAGATCAAGGATTAAGTCGTATAGAAGATTTACTACCACAGTTCATTGTTGCTAAAAGTTCTAGTGTAAACAACATAACAAATGAATCAATAATCCCCGTGTTAAAAGAGACTGCTACAGATGGCATAcctgtaaataataatagtatttcaACTGAATCATCAATATTATATGACGTAAAAAATAGCATACAAGATACTGGTTTATCAAATGAAACGTCAATAAATAACGAttctagaaaaataatttcggatagtgatataacaaaaatagatGTTAGTGATATAAACGTACCAAAAAGTGTGCaaatagaagaaattcaatcaaaaattaatacatcagataattcttttttttatgaatgtaTTGCTTGTGGATCATTTTTCCCAGAATTTAAAATACTTCAATCACATCTAAAGAAATGcttgaagaaagaaacaaatagtGTAAATGATAACGATACGATATTTAATAGATCAAAATGTGTGAATATTTTGGAGAATTCAAAATGTGATGATATACCAGAATTGAATTCATTGATACACCAGCAAGAATCTTCTGCTCTTGGTAATAGTAGTACAGTATTGTCAACATTTTTGATGTTTCCCTCAATTTCTCCCATCTctaaatctaaaataaaaaaaattaatcatgaTATTCGACAAAAGGACAAGCGTGCACGTCGCAAACTATtacaatacaataataaaaatactcgaTGTACTGTCTGTTCAGAAGTATTTGATTCAATGATGAGTCTCTCAAAACATATTTATGGCCATACTGAAAAAGAGTTGCAAAAAGCATATGAAATTGccaaaagaaaacagagatgGAAAAGTGCAAATGACAGCGATAGTGAAAGAACTGATATGAATACAATTGATTCAAGTGAAAAAACACAAACCAGTGAATCTTCAAGTACATTAGTCATAGATAGTACAACGGTTGAATCATTGCAAACTGAtctagaaaataagaaagatggaaatacagcaaataaaattatttcaatggaAAAAATGAGACAAAAtgaatcaaaagaaataaaaaattctttggaTCCATTAGCAATAGAAACTAATAAACAtgtatcaatgaaaatttctaaagcttgtgaaacaaaatcaattaaattttgtgCGTgtcataaaaatgaatttggaAACAAAACATCTATTGAATTAGTTTTActttgtaatatttgtaatattttatttcaaacaagGGAGTGTTTTGAAGCCCATTTTGAAAATGTGGAAACATATTTGTGTAATGCTAAACGATTAACTAGTAGAGTCCCAAAATTGTATTGCAGTGTTTGTCAAGTAGTATTGTATTCTTTTATTGGTATGCGTCAACATATggaaaatcatttaaaaaattttccaagTATCAAACTGTTTTGTCATGTCTGTAAGGTACGTTTTATCGGTATGGGtcctatatttaatttacactGGTTTAATCACacaagaaatatttgttatgtAGCTTCAGCTTCAAATTTTCCAAAACTATCGATAGTGGATCCAACCAGTGAGGAATGGTCAATTATTACTTCAGATCAATTCAAGTATCTTATAGTGACAGAACACGTTTGCAGTATTTGTAATGCACAGTGCTTTTCAAagaatcaattaaaatatcatatgTCATCTTGTACAGAAAATTCAGTTTCAAAGTTACCCAGCATAATATCTACAAATAATCACGAAAATGAAGATATTCAATCGGAATTGAACTTGCGTttgttttgtaatatttgcAATCTCACATTTTCACAAAAATCTTTATATGAAAAGCATGTTGCAAGTCacaaaaataatttgcaaTCAGAGTACATTTATTTGTCAGGAACAGATGTAAACAGAacgtatatttgtaatatttgtgCGAACATTTACGAAAACCTAAAGGAATTCATGATACATTGGCAAGATCATAATTTGGTACGTGAAACTTTCATGTGtaataaatgcaaaaaaagTTTCATCGATCTGGAAACATACGTAGAACATTCAAAGAAGtgtaatatatcgataataaatgtaGAAAACTCTTCCTATCAAGAGATTTATCACAAGATGGATTTTACTTGTAAGATTTGTAATTTAACTTTTGACTCAGACAAAACTTTATGTCAACATACTAGTATTCATCATGAAAAGTTTCCAAATTTGGATACAATTCCCTCAAATAATGCATGCAACGATTTAAACttacaaaaaatttctttgatatatcCGACAAAATTAGAGCGTGATTTGATAGCACCTATCATTGTTTCTACTCATTCAACTGATGAAATAACGACGAACAGCACAGCTCCTGTAAACAAGAGTATATCTGAAGTACCTGAAAACAATTCTACAATCAACCAGTCAATTGATTCATTGAAATTATCGACAAATTCTGGATCAGTAGAATCTAGTACtgttgataaaaatttagaaaatcttTCATCGGTCAGCGATACAGAAATCGACGACTCGAACGCAaccaaaattaataattttctgagAAACAATAGACCGTCTGTTCTTATGAATAAAtcggaaaaggaggaaaacaCAACTGCTATAAATAATAGTTTGGATAAGTAtgataatagaaaagatttaaacAACAGAAACACAGTGATAGTTAAATCACCTGACTTGAAAAAGAATGATGTTCTTGATAATCCTCTGCCATctgaaaatattgatataaacgaaaaacaaGATGATGTTATACTGATCGAACCTAATATTTTAAAGGAAACCGTAAAACCAATGACGAGCCTCCAATCAAATAATTCTACTGAAAAGAGTGAAGAGCCAATACAGACTAAGAAATATTTACGCGTAAAGAATATCTCAGAATTGATGGACCAAaacataaaatacaatttttacaataaaaatgacCAAGATGGAAATACCAACATTCCAATGTCTTCATCTATGGCCATGAATTTGTCAAATCAAAAACAAACTAAGAAGTTAAACGTCAAatcacataaaaataaaaaatcatcaaATGACCAACAGAAATCTGTAAAGACTACTTCAGGTGCGaaagtttataaaatgatCATTATAGATCATTCACCTACTAAGAAACAAGCGGCTTATGTTCCTTATTACGAATCAGAGAGACCGAAACAGAGCTTTGTTGTACCACCAGCATCAGTACAAAAAACAAGGTCAATACCACAATCAGCACAAGGAGCAGTGCCAATACTAGCACTGCAATTAGCACAAAATACAACTCTAATAGCAACACCAGAATCAGCACAAAAAGAAATACCGACACTAGTACCACAATTAGCACAAAAAGCAACATCAACACAAATACTAGCACTACAATCAGCACAAAAAGTAACACAAATGCTAATACCACAATCAGCACAAAGAGAAACACCAACATCACCACTACAATCAGCACAAAGAGAAACATTAACACTAGCACCACAATTAGCacaaaaaacaatattaataccAACACAAACACTAGCACCACAATCAGCACAAAAACCAATACCAACATTAGCATCACAATCAGCACAAAAAGTAACATTAACAACACCACCAAAATCAGCACAAAGAGAAACATTAACACCAGCATCACAATTAGCACAAACAGAAATACCAATACCAACACTACAATCAGAACAAAGAACAACATCAATACCGCTATCATACTCAATACGAACACCAGCACCAATGCCAATATTACGATCAGCATTATTATCAGTACCATCCCTTAATGATTCTTGCACAGCTCCATTGCAAATTCCTGATACTCAATATTCAAATATCAAACCATTTACTACAAATTCATGTCCAATGAATCCAAGAATTACTGCTGCTACATATACTCCATCAATAATTAGAGAACCACAAAATATGACTCAAAATCGAAGCTTGTTAATCGCTCCATCGTCATCGGTTTCGACAAATTCTTCGACTAATAATTACATGAGTAATACTTATATAGCTCAGAGAAATAACACTGCGTTAAGTAAGACTGCACCTACATCCATGATATCGAATTTACAATCGATGAATGATATTTCTTACCAAAATTTAAAGGCAGGACAACCGCATGATACTCATAGTACAATAAAGCTGCAGAATGCAGTTCATAATAGGTGTAGTAATAGATCAACCAAAGTAATGCCTATTGTCAGATCACGGAACACTATAAAGTCATATATGAACAATGGAACCTCTAGTCTTCCAGTGTCATCTGATcaaaatcattataataattctaatatcaAGTATACTTCCATGAGTGGAGGAAATTTGACTATAATGCAAACGCAATATTTTaagcaaaataataatcgGATAAATAATGTAGGTAGTATACAAAAACAATCGAATACTCCATTCCAAATGTCCACTTTCTGTCAGCCAGTTATTGCGAATTCCCATTCTGTGATGTCCCCTCAACAACCGCTTGTTCATTATCAGCCTAACACAAGTGTAGCAAATTCTCAATTTGTgcattctttatatatgtgcCATTTTTGTCCAAAGGTTTCATACTTTTCAACGGTACAAGAGTTGGATTATCATTTGAATGTTCAACATAATTTTTTCTGTAATATTTGTAACGAACGTTTGTACACTTCAAACGATCTCGATATTCATAAGTTACAGCATGATTCATCGTGGTTTTAA
- Protein Sequence
- MKESIEQHKHFPINILPTKTIDNSHKDFTKQSNISTELELNSCILPSKYEQPKNSKVLLVKLEKLGISLKEQNVVSKVEHSIAQYIDYSKINFFNHSSNVFAHNSEVSSAISECINEALAKLNPFEKEVMIKYLLSKHATSNALTIQLEQNSSSSKRILQDVYNLEKFSQIFSCENVWLKSTENMKYPEICTSSIYEIEGTSNLSKLPQIIQDEIISPQRMILKTHLQRYLERFSRSSSLAEVNSMTVSDEILKRSSKLKEIQILPLLITEQNISPKNSNETLKLISAIDYENITILQNYERTLISNDEQNALQMNTDQGLSRIEDLLPQFIVAKSSSVNNITNESIIPVLKETATDGIPVNNNSISTESSILYDVKNSIQDTGLSNETSINNDSRKIISDSDITKIDVSDINVPKSVQIEEIQSKINTSDNSFFYECIACGSFFPEFKILQSHLKKCLKKETNSVNDNDTIFNRSKCVNILENSKCDDIPELNSLIHQQESSALGNSSTVLSTFLMFPSISPISKSKIKKINHDIRQKDKRARRKLLQYNNKNTRCTVCSEVFDSMMSLSKHIYGHTEKELQKAYEIAKRKQRWKSANDSDSERTDMNTIDSSEKTQTSESSSTLVIDSTTVESLQTDLENKKDGNTANKIISMEKMRQNESKEIKNSLDPLAIETNKHVSMKISKACETKSIKFCACHKNEFGNKTSIELVLLCNICNILFQTRECFEAHFENVETYLCNAKRLTSRVPKLYCSVCQVVLYSFIGMRQHMENHLKNFPSIKLFCHVCKVRFIGMGPIFNLHWFNHTRNICYVASASNFPKLSIVDPTSEEWSIITSDQFKYLIVTEHVCSICNAQCFSKNQLKYHMSSCTENSVSKLPSIISTNNHENEDIQSELNLRLFCNICNLTFSQKSLYEKHVASHKNNLQSEYIYLSGTDVNRTYICNICANIYENLKEFMIHWQDHNLVRETFMCNKCKKSFIDLETYVEHSKKCNISIINVENSSYQEIYHKMDFTCKICNLTFDSDKTLCQHTSIHHEKFPNLDTIPSNNACNDLNLQKISLIYPTKLERDLIAPIIVSTHSTDEITTNSTAPVNKSISEVPENNSTINQSIDSLKLSTNSGSVESSTVDKNLENLSSVSDTEIDDSNATKINNFLRNNRPSVLMNKSEKEENTTAINNSLDKYDNRKDLNNRNTVIVKSPDLKKNDVLDNPLPSENIDINEKQDDVILIEPNILKETVKPMTSLQSNNSTEKSEEPIQTKKYLRVKNISELMDQNIKYNFYNKNDQDGNTNIPMSSSMAMNLSNQKQTKKLNVKSHKNKKSSNDQQKSVKTTSGAKVYKMIIIDHSPTKKQAAYVPYYESERPKQSFVVPPASVQKTRSIPQSAQGAVPILALQLAQNTTLIATPESAQKEIPTLVPQLAQKATSTQILALQSAQKVTQMLIPQSAQRETPTSPLQSAQRETLTLAPQLAQKTILIPTQTLAPQSAQKPIPTLASQSAQKVTLTTPPKSAQRETLTPASQLAQTEIPIPTLQSEQRTTSIPLSYSIRTPAPMPILRSALLSVPSLNDSCTAPLQIPDTQYSNIKPFTTNSCPMNPRITAATYTPSIIREPQNMTQNRSLLIAPSSSVSTNSSTNNYMSNTYIAQRNNTALSKTAPTSMISNLQSMNDISYQNLKAGQPHDTHSTIKLQNAVHNRCSNRSTKVMPIVRSRNTIKSYMNNGTSSLPVSSDQNHYNNSNIKYTSMSGGNLTIMQTQYFKQNNNRINNVGSIQKQSNTPFQMSTFCQPVIANSHSVMSPQQPLVHYQPNTSVANSQFVHSLYMCHFCPKVSYFSTVQELDYHLNVQHNFFCNICNERLYTSNDLDIHKLQHDSSWF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -