Basic Information

Insect: Vespula germanica
Gene Symbol: Bcl11b
Assembly: GCA_905340365.1
Location: HG996539.1:2864868-2879730[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.012 0.74 10.1 0.1 2 23 161 183 160 183 0.95

2 6 3e-07 1.9e-05 24.6 0.9 1 23 516 538 516 538 0.98

3 6 0.00067 0.041 14.1 0.4 2 23 562 584 561 584 0.97

4 6 1.2e-07 7.6e-06 25.8 2.9 2 23 788 809 787 809 0.97

5 6 8.9e-06 0.00054 20.0 3.3 1 23 815 837 815 837 0.99

6 6 4e-05 0.0025 17.9 0.4 1 22 845 866 845 866 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.012	0.74	10.1	0.1	2	23	161	183	160	183	0.95
2	6	3e-07	1.9e-05	24.6	0.9	1	23	516	538	516	538	0.98
3	6	0.00067	0.041	14.1	0.4	2	23	562	584	561	584	0.97
4	6	1.2e-07	7.6e-06	25.8	2.9	2	23	788	809	787	809	0.97
5	6	8.9e-06	0.00054	20.0	3.3	1	23	815	837	815	837	0.99
6	6	4e-05	0.0025	17.9	0.4	1	22	845	866	845	866	0.97

Sequence Information

Coding Sequence: ATGTATGGACCAATTTcgGAAACTTCGCAAAGTAGTACGTCCCCAGACACCGTCCAATGCGGAGGTTGTAGGGCGTCCTATCCCCTTGGTGAGATCGTTCGATTCATCGAGCACAAGGTCAATCATTGTCGAAATACTCTCCAAGGCTGTCACAGTCCTCCGGCAACGGCAGCACCAGAGGACTCTGATCCCGAGGACGCCCTTGCCCTTAAAAGTACCGATCAGGATTCGAAACTAAATTCGGTCCCAAGTATCTCCGCACCCATCAACAAAAGGGGTGGTAGACTTGAAAGTCCACCAACGCCTCAGGGTTCAGCACCGGATACCGGAAGTCCGATCGAGCTTCGAGCTAGTGCGAGTTCGACGCCGAAAAGACGAACGGAGGACATCGACGATGACAAGGAGGAACTTCCTAAGAAGCAAAAAACCGAGTCCGTCGATGCCGATACCAATACCGTCAATTCCGaACCAAGATGGCTGCAATGTTCGCAATGCTCGAGACGAGTATCGTCCGCGTGGGAGTTACTCCAACACGCGCAAAGCGTCCACGGTGCACGTTTGTATAGTTCGTCCTCGCCGTCGACGAATTCGTCGTCGAATACACCAGCACCGAGTCCACCCACGCCCACACCAACGCATGCGCATCACCTGAGTCCGCCGAATCACTTAAATTTAAGCGGCAAATCGAGCGGAAGTTCATCCGCGGCGAACAGTTCAGCTGGAACGAACACGAGTGGTAGCAGCGGAAGCCGTCAACAGCTTCAAACGTCGGCCTCGTTGGTTGGTGATCCGCTACATAGTTTTCTGAGGCTACCGCAACATTTGGAAAGAAGTTTTCCACCGATGTTTAGGCCAGATTTCCTTGCGTTAAATCCTTTGGCTGGGTACAGAGGTCTCCAAGAGTTACAAACGGCGACGAGGAACCTACAAAACCTCGGTGATCCGTTACGTGGTATGGACGGTTTAAATTTAGGTGACCCTCTCGTCCGTAGCTCGTTGGATTCGTTAAACAACGCAAGAAATCTAGCGAATTTAGCCGAACTATCGCATGGCCGTGCATTGAGTGCACAGGCACACCCACCACCGTTAGAAGCCAACCTGGATTTTTACTCGGCGCGCCTAAGGAGCCTCGCTAATCCGTCCTTAGGCGCGGCTCCACCCAATAGCGGCAATCCCAACCCTAGCAACTCGAATCCAGCACCGCCTACTGTACAAAACGTTTTACCGGTACCTGGAAATCTTCAAGctcagcaacaacagcagcaacaacaacaacagcagcaacagcaacaacagcaatcTCAACAATCTCAACAATCTCAACAAAGACCACCGTCTCGTCCTCAACCCGTAGAACCACCGAGTCCGGCTACTAACAATCCAACCAATCTTACGCATAGCAATCatcagaaagaaaattcgcCACCTTGTTACAGTCAAAGCCCTATCGGACAtcacaataataacaattcaaCGGATAGCGAGAAAACTAGTCCGCCGGTAGCTTCTACTCCTATCATTGCCGATTCTGGTTCGGAAACAATTTACGCTTGCGAGGTCTGCGACAAGAAATTTCGATTCCAATCGAATTTGATCGTTCACCGGCGCAGTCatcgagagaaggagaggcaGTATCAACAGGATGGTGGTACGCAGGATGGACAAACGGGTCAGCAGACTACAAGGTGCGAAGTTTGCGAATTAGAATTGTCTAACTTCGCTGAATTGAGGAAACACATGAGGAAGGAGCATCAGGAGACCTTGAACGTTGCCGCCAGTCCTCAAGGAAGCGTCGAGACCGTGCCGGACGATGGTTCGAGTTGCGACGAGAATATGGATTTGGACGAGGTCGAGGAAAACGATCAGAAGGCCGAAAGAGAGGACACCGAGGAGAATACGCCGGAGGATTTGAGTACTACGCAGGGTCAGAGCGGCGAAGAGAGCGGTGGTAGGATCGATCAGAAATCCGACAGTTTAGTCGGCGATCTCATGGAAAAGTTTGGCTTGAGTAACATAGCCCAATACTCAGAAGCATACAGGCAAGCCCTTCAAGAGAATCATCGTGGTAGTTTTATAAAAACCGAGTCATCGTCGAGTCTAGCCAATTCCTTGAACAATAACAAGGAAAAGGATAGTGCCCTGTCACCTACGAACTTTAATTCTTCGACAACGCCTAACATATTTTCTGGACAAGGCTTTCCAAGATCGTCCGGGCCAGATTTCGGTGGTCTTTGGTTACCAAGTCCTCATTATTTAGAAAACAACGAATTTCGAAAAGCCTCGAAGGCAACAACGTCCAGTCTTGCACTGCAAGGTCTGCCGAGTCCTCTTTTGAAGAAAGAACGGAGTGGTAGAAACGATACCTGCGAATATTGTGgtaaagtatttaaaaattgttcgaATCTGACGGTTCACAGACGTTCGCACACCGGTGAGAAACCGTACAAGTGCGAGCTTTGTTCCTACGCCTGTGCACAAAGTTCTAAACTTACAAGGCACATGAAGACGCACGGTAGACACGGTAAAGATACTTACAAGTGTCGTTTCTGTGAGATGCCATTTTCGGTACCTAGCACACTTGAGAAACACATGAGGAAGTGTGTGGTGGTAGTGCAACAGGGTCCTAAACTCGGTATGCCGTATCCCGGTAGTCAGGATGAGGATTCGTCTTTGAGCACCAAGGACACTTGA
Protein Sequence: MYGPISETSQSSTSPDTVQCGGCRASYPLGEIVRFIEHKVNHCRNTLQGCHSPPATAAPEDSDPEDALALKSTDQDSKLNSVPSISAPINKRGGRLESPPTPQGSAPDTGSPIELRASASSTPKRRTEDIDDDKEELPKKQKTESVDADTNTVNSEPRWLQCSQCSRRVSSAWELLQHAQSVHGARLYSSSSPSTNSSSNTPAPSPPTPTPTHAHHLSPPNHLNLSGKSSGSSSAANSSAGTNTSGSSGSRQQLQTSASLVGDPLHSFLRLPQHLERSFPPMFRPDFLALNPLAGYRGLQELQTATRNLQNLGDPLRGMDGLNLGDPLVRSSLDSLNNARNLANLAELSHGRALSAQAHPPPLEANLDFYSARLRSLANPSLGAAPPNSGNPNPSNSNPAPPTVQNVLPVPGNLQAQQQQQQQQQQQQQQQQQSQQSQQSQQRPPSRPQPVEPPSPATNNPTNLTHSNHQKENSPPCYSQSPIGHHNNNNSTDSEKTSPPVASTPIIADSGSETIYACEVCDKKFRFQSNLIVHRRSHREKERQYQQDGGTQDGQTGQQTTRCEVCELELSNFAELRKHMRKEHQETLNVAASPQGSVETVPDDGSSCDENMDLDEVEENDQKAEREDTEENTPEDLSTTQGQSGEESGGRIDQKSDSLVGDLMEKFGLSNIAQYSEAYRQALQENHRGSFIKTESSSSLANSLNNNKEKDSALSPTNFNSSTTPNIFSGQGFPRSSGPDFGGLWLPSPHYLENNEFRKASKATTSSLALQGLPSPLLKKERSGRNDTCEYCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRHGKDTYKCRFCEMPFSVPSTLEKHMRKCVVVVQQGPKLGMPYPGSQDEDSSLSTKDT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01454407;
90% Identity: iTF_01090212;
80% Identity: -