Vger003891.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- -
- Assembly
- GCA_905340365.1
- Location
- HG996531.1:5556208-5557752[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.7e-05 0.0041 17.2 4.4 1 23 168 190 168 190 0.97 2 9 3.9e-05 0.0024 17.9 1.7 1 23 196 218 196 218 0.98 3 9 0.035 2.1 8.7 2.0 1 23 225 248 225 248 0.94 4 9 5.3e-07 3.2e-05 23.8 1.3 1 23 254 276 254 276 0.98 5 9 0.42 26 5.2 3.9 2 20 282 300 281 304 0.82 6 9 8.1e-05 0.005 16.9 1.9 1 23 311 333 311 333 0.95 7 9 5e-07 3.1e-05 23.9 1.2 1 23 337 359 337 359 0.99 8 9 0.014 0.89 9.9 1.1 1 23 365 387 365 387 0.94 9 9 2.2e-06 0.00014 21.8 0.6 1 23 393 415 393 415 0.99
Sequence Information
- Coding Sequence
- ATGACCAATAACAACGATCCCTTATACATCCAACCACGCATAACGATGACGGTGGTTAATGAGCCATTCTTCGTAGCATCTACTCAAAATGGAGTACAGAATATTGGTGATGATAATACGTTAGAGCTGCCTAATGCATCAACAAGTAATATCGCAGCTCAATCCGAAAGGTATAACTCACTCAACTCACTCGGTCCATCTTTTCTCACAGTGAAATTGGGAGACGACTACTTTCGCATTCCGAAATCTTTGAGCGTCTTTATGATGAAGGAACCAAACCCATACGAAAATGATTCAACGGACAAAAATgtagtgaaagaagaaaagggggaTAGTGTTATGCAAACGAGAAGTAAACAAAAACTtaaggaagaaaagattaaGGAAGAAACCGATACTACGGATGATCTGGACGATACTCCTCttgattttagaaaaatgtgtgaagaaaaaaatacgaaaaccAAGTCTGATAGATTAtctagattaaaaaaaaagccaCATACTTGTGAGATCTGTTACCTTACCTTTGATCGCAAGAGTAAACTCACCAGTCACATGTTCAAACATAGTAATTCGAGACCTCACAAGTGTCGAATTTGTTCGAAAGGATTTAAAACCGGTGCTTATTTATCAAGACACATGGAAATACACGACGAACCGGCACAGTTACATGCTTGCACACTATGCGACTTCAAGGCCAGAACAAAGCCGTATTTAAAAATCCATTATATTCGTAAACACACGGAAGATTACAATTACAGTTGCGAGCAATGTGGGAAAATGTTTAAAGTTCAATCGGACTATACTACGCATATGAAGGACCACGATACTGAATCTTGCGTTTGTGATATCTGTGGGTCTTCATATCCAAGTAAAAGTTCTCTTTACTTTCACAAACATTATAAACATAAGACTAAAATCAAGGAATTCGAGTGTTCGACTTGTAGGAAGAAATTCAAAAGTCAAAAAAATCTTGATAATCATGCTGAGTTACACAAGATGAAATACGTGTGTGAACAATGCGGGATggaatttaaatttaagtaTGGCCTGACGAAACACTTGAGAACACATTCCGGAGAAAAATCTTATCTCTGCGCGATTTGTGGGAAAACGTTTGGCTGTTTGAGTTCACAAAAGATACATCTGCTCACTCACGTTGGTGAACGTCCTTACGTTTGTGACATCTGTGGGCAAAGTTTCACACAGAGATCTCCAATGATGTTGCACAGAAGGAAACATCCTGGTGCGCatccaccaccaccgccgatCAAAATTACTAATCTCTTGCACGGTGTACAAGACAAGATCATCatgaataagaatataaaataa
- Protein Sequence
- MTNNNDPLYIQPRITMTVVNEPFFVASTQNGVQNIGDDNTLELPNASTSNIAAQSERYNSLNSLGPSFLTVKLGDDYFRIPKSLSVFMMKEPNPYENDSTDKNVVKEEKGDSVMQTRSKQKLKEEKIKEETDTTDDLDDTPLDFRKMCEEKNTKTKSDRLSRLKKKPHTCEICYLTFDRKSKLTSHMFKHSNSRPHKCRICSKGFKTGAYLSRHMEIHDEPAQLHACTLCDFKARTKPYLKIHYIRKHTEDYNYSCEQCGKMFKVQSDYTTHMKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKIKEFECSTCRKKFKSQKNLDNHAELHKMKYVCEQCGMEFKFKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGAHPPPPPIKITNLLHGVQDKIIMNKNIK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01255892;
- 90% Identity
- iTF_01234543;
- 80% Identity
- iTF_01515007;