Basic Information

Insect: Vespula germanica
Gene Symbol: salm
Assembly: GCA_905340365.1
Location: HG996529.1:5840341-5849206[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5e-06 0.0003 20.8 0.9 1 23 388 410 388 410 0.98

2 9 9.8e-06 0.0006 19.8 2.1 1 23 416 438 416 438 0.98

3 9 0.062 3.8 7.9 3.8 2 23 805 826 804 826 0.98

4 9 4.3e-08 2.6e-06 27.3 0.6 1 23 832 854 832 854 0.97

5 9 6e-05 0.0037 17.4 2.6 1 23 864 886 864 886 0.98

6 9 0.0021 0.13 12.5 1.9 2 23 1204 1225 1203 1225 0.97

7 9 0.032 2 8.8 0.6 1 13 1231 1243 1231 1245 0.92

8 9 5.8e-07 3.5e-05 23.7 2.1 3 23 1435 1455 1433 1455 0.96

9 9 2e-07 1.2e-05 25.2 0.9 1 23 1461 1483 1461 1483 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5e-06	0.0003	20.8	0.9	1	23	388	410	388	410	0.98
2	9	9.8e-06	0.0006	19.8	2.1	1	23	416	438	416	438	0.98
3	9	0.062	3.8	7.9	3.8	2	23	805	826	804	826	0.98
4	9	4.3e-08	2.6e-06	27.3	0.6	1	23	832	854	832	854	0.97
5	9	6e-05	0.0037	17.4	2.6	1	23	864	886	864	886	0.98
6	9	0.0021	0.13	12.5	1.9	2	23	1204	1225	1203	1225	0.97
7	9	0.032	2	8.8	0.6	1	13	1231	1243	1231	1245	0.92
8	9	5.8e-07	3.5e-05	23.7	2.1	3	23	1435	1455	1433	1455	0.96
9	9	2e-07	1.2e-05	25.2	0.9	1	23	1461	1483	1461	1483	0.98

Sequence Information

Coding Sequence: ATGCAGCTCATGCGATGGAGCATAACGCGTCGCCTGGAGTGTCGGGGCATTAGGCAATCTCAGGAGAAAAGCTGCCAACCAACGACAAGGATTTATTCCAGCCGATCCTCCGGAGAGGAAAATGACTTCATATCGGACGGCGAGGAGAGTGGCGgcggtggaggaggaggagacgaAGCGGTTGATCTTACAGCGGCTCGAACTCATCACGGAgatgaggatgagaaggaTCAAGAGGATCCTTTGGAGGAAGACGAGGAAGGCGTCGACGAGCAAGACGAAcaagacgaggacgaagaaggCTCGCGAAAGCAAATGCACCATCGGCAGGACGCGgaaaacaataacaatttcGTCGAGGGTGGAGCGAGTAGCGGGATCTTTCCACCGGCTGGTACTAGTCACGTCACGCTCGAAGCCCTTCAAAATACGAAAGTGGCCGTCGCTCAATTCGCGGCCACTGCACTCGCCGGTGGGGCGGACAGCGAGGCAGCTCTACAGGACTTGGCCCTCTTGCAAAGTACGCTCTACACGCTTCAACACCAGCAGGTTTTTCAATTGCAGCTGATAAGTCAGCTGCAACAACAATTATCCATTACTCATGGCCAATCCGTGCCACAATCGTCGACGACCGAGCCGCCCAATAGCAAGGAAGCATCGCCGTCTCCTGTCCTGCATCCGAAGGCATTGTCTACATTGACCTCGCCACCTTCCTGTCGATCACCCAGTAGTAGCAGCCATCGTCAACAAAGCTCGCCGGCGCCGGCAACGCCGAATCTACCCCAAGAACGGCCTACGCCTAGCAGCAGCGCTTCTCCTCTGAATCTACCGCTGCAAGCTACTACGCCTAACGTCTCCTCGAGCATACCAACGACGAGTAACAGTAGCAATCTAGCGTTGTCCCATCAGATGCCACCGCTGTGCTCGATAAGCTCGTCCTTGGCGTCCTCGATAATAACCAATACGGATCCACCGCCGCTTCACGAACCGAACACCCTGGAAATGCTACAGAAACGAGCGCAAGAGGTGCTGGACAATGCCAGCCAAGGACTACTGGCTAATAACCTCGCCGACGAGCTCGCCTTCAGGGGTGGCAAAGGTTCTCGGCTCTCGCCTTACGACTCTAAATCAGGTGGCAGCCGGGGAGAACATTTCTTCAAGCACCGATGTCGCTACTGCGGCAAGGTTTTCGGCAGCGACTCGGCCCTACAGATCCACATACGATCCCATACAGGTGAGCGACCCTTTAAATGCAACGTCTGCGGCAGCCGATTCACCACGAAGGGAAACCTGAAGGTCCACTTCCAGAGACACACGGCTAAATTTCCGCACGTTAAAATGAACCCAAATCCCGTCCCCGAGCATCTCGACAAGTATCATCCGCCTCTCCTTCAGCAGATAGCCTCGGGTCAGAGGCCGATGCCGTCTCCGCCACCTCCGCCTCCTTCGCATCACCCCTCGTTTCATCCAGCGGCTACGGCCCACGGATTTCTTCCTCCTCAGCCACCTCTGCCACTCAGTCTCGCCTTGCCCGGAATGCCACCCCTTTACCGGTCTCCCATTATTAATCATCGCGACGACCAAGAGCTACCGGAAAACTTGAGTAAACCCAACGTAACCACGGTACCGACGGCCACCTCGCCCCTCTCCCCGGCTGCTCTCTCCAACTCCCACCATTCCTCCTTCCACGATAATcatcaacaacagcagcaaaaGCAACAGCTCGAGCAAGAGGAAATCAAAATGGAACAGCGTTCGCCTCTTCAAGAACAATACCCGCAACGACCGACTAGTAGGGACGGTACCGACAGAATAACGCCGAAGAAAGAACCCGAGGACACCGAGGAACCGGTGGAAGAGGAGACCGAAGATTTTGAAGAAACGACAAGGCGATATCTCGCTTCGCCGCCTTCTTCGGCTAACCCACCCTCGCAACCTCAAACCTACGAGGACTGTAGTATGGACAGCAAGATAAGTGGCAGATTGGAGGCCGACGGTGACATGGAGGTGGACGAGGAGACCGAGGAACAACCGGAGAATCTTTCTAGTCGAGGTACGGCCGGTCGTTTGCCTCAACAAATCGTCGCATATCCCGGAGCATCGCCGGCCAGCAGCAGCGCGAGCAGCGGAAGCGTTCAAACGTCCTTCGCCGGGATTTTATTCCCTGGGCCACCTGCTCATCACCAAATACCACATCACACTGTCGCGAACGCGAGCGTCACGCCGACCGTCTCGGCGCCCGAGATGATCGTCGACCCTGCCAAGGATCCGGCGATATATTCCAGTCTCCTACCGAGACCCGGAAGCAACGACAATTCCTGGGAGAGTTTGATCGAAATAACGAAAACGTCGGAAACGTCGAAATTGCAACAATTGGTCGATAATATCGAGCACAAGCTGACCGATCCGAATCAATGCGTCATTTGTCACAGAGTACTCTCTTGCAAGAGCGCCCTGCAAATGCATTATAGAACGCATACAGGAGAACGTCCGTTCAAGTGTAAAATTTGCGGGCGAGCTTTTACCACGAAGGGCAACCTCAAAACCCACATGGGTGTGCACCGCGCGAAGCCACAGCTTCGAGTGTTTCACCAATGTCCCGTTTGTCATAAGAAGTTCACGAACGCTCTCGTGCTACAGCAGCACATACGTCTGCACACGGGCGAGCCTACCGATCTCAGTCTGGAACAGATACAGGCGGACGAAGTGAACGAGTTTCCCCCTGGCTATTCGCATCACCCATTAGCCTCTTTCCTACCTCAAGGATTTCCACCGATACATCCGACGAGCGCGGGTTTCTCCCTAGGATTTCCACCCTCCCGACAGCCTACCATAGAACGACAACACCAGAAAAACGACGTGGACGTTAAGGAGGAACCTCAGCAGCAACAgcatcaacaacaacagcaacagcaacatcaATTACTTCATcatcaacagcagcagcagcagcaacagcagcagagATACATGGAAGAACACAACGAGGAAGTGGAAGAgcaagaagacgaagaggaagatcGCAGGGAGGACGACGAAAGGTGCGAGGTCAATCGCGATAGGTGTATCCCGGACACCGAGGAGGAACAGGATCACGAGAACGAGGAAagcgaacaaaaagaaatctctctatctaccttCTCGACCTCTTTGGCTGCTTTGGAGAATCAAGTGCGAACGATCACGACCACGGCGACCGGCACGGCCTCGAACGTCGCGAGATCGCCTTCCTATCATCGTTACAACGGCAGCGACAAGAGCAATAGCCCTCCCACCGGTGGGGCACCCCTCGATCTCACCCCTCGAGCCTCGTCGACGCCAGCCTCGGTATCATCCGCAGCGACGCCGCCACCCCAGACGACACCCCATCACGCGCATCCTTTCGGAATGTTCGCAGGCCTCTTGCAGACGGTCTCCTCCTCGCCTTCCACCAGCACCATGGGATCCTCCTCCAGCATAAACAGTGTCACTTCGATGAATACCGTCGCTCCTGGCAGCGGTGCCAGTGGTCCACTAGCCTCCCTCACAACATCGGCAGTCCTCGCTGCCACGTCGACCTACAATCCGCTCGGCCTAGCTGTCGGAGGGCCAGCAGTACGTGGAAACACTACGTGTAATATCTGCTACAAGACATTTGCGTGCAACTCTGCTCTGGAGATTCATTATCGAAGTCACACGAAGGAGCGGCCTTTTAAATGCAGCATATGCGACCGAGGATTTTCGACGAAGAATGCTGGATCGGACGTATGCTCCTCGTGCGCGGAGCAACGAAAGCCCTTTACCATAAAGGGCACTCCACAAACGAATAACCGATATCAGAGCGAGGAGAGAAGAACGTCGACTAGCGGAAACGAGGAGAAACCCAAACGCAGGCGGCGGAGGCCTGAGGAACGGAAGAACCGGGGGCGGACCGGGACCGGAGGGGGGCGGGGGCTGACGTCTATCTATTCAACCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTCACCTCGGACCACGTCTTCCTGGGCAACATGAAACAACACATGCTGACACACAAAATACGCGATATGCCACCCCATCTCTTCACCGATGCGAAACAACAACACCAACAACAAAGCCAGGACCACGAGAGTTCTAGGAGTCCTATGTGCAGCGACGATTTGAGTttaccacctccacctccacccccgccaccaccaccaccggtACCACCGACGTCGATCGAGTCGGCAGTACCAATGAAGAGATCTCCACCCGAGGGTGATCTTCCGGCACCAAAGAGACCACCCAGCGTGCCGAGTAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCATCATCTTCGGCGCTCCAGATCCATATGAGAACTCATACTGGCGACAAACCATTCCGATGCACCGTCTGCCAGAAGGCCTTCACCACCAAGGGTAACTTAAAGGTACACATGGGAACCCATATGTGGACCAACGGGGCCTCGCGGCGAGGACGACGCATGTCGTTGGATCTGCCACCTCTGCCCATCACTCCCAAGGACTCGGAGTTCCTCCAGCGACGGCCGGATCTCTTCTATCCCTATCTACCCGCGCCATTCCTTAACGGAGTACAGCAAAAGCTGAACGAGATATCGGTGATCCAAAGTAACAACGGTTTGCCAGCACACTCGGTAGGCGCGGCAAAGTACGCAGGACTATTTGGTTCCGTGTACAGTGGAAACGGAGGAGGCTTCCCTGGGGACAAACAACCGATGGCGCCAACTAGCAACGGGCCCTTGGTCGACGGCAAGCCAGCCATACCAACTGGCTCGATGCTTTTCCAAACGCCATCGCCGTCTCATTCGCCGGGTACACCGTCCTCTAACAGTGGAAATCAAAATTCGGCGAGTGTTCCGTCGTGGACGACGAGCACCGGCGATCCTCTTCAACATCATTTCGACAGAGAGCCACCAAGTAGAACAGAGAACGCAGCTACACCACCTACGGCGAGATTACCGCCACCTTCGGCCCCAAGAGGCGAAGGACTCGCCGCGTGA
Protein Sequence: MQLMRWSITRRLECRGIRQSQEKSCQPTTRIYSSRSSGEENDFISDGEESGGGGGGGDEAVDLTAARTHHGDEDEKDQEDPLEEDEEGVDEQDEQDEDEEGSRKQMHHRQDAENNNNFVEGGASSGIFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHGQSVPQSSTTEPPNSKEASPSPVLHPKALSTLTSPPSCRSPSSSSHRQQSSPAPATPNLPQERPTPSSSASPLNLPLQATTPNVSSSIPTTSNSSNLALSHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRLSPYDSKSGGSRGEHFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAATAHGFLPPQPPLPLSLALPGMPPLYRSPIINHRDDQELPENLSKPNVTTVPTATSPLSPAALSNSHHSSFHDNHQQQQQKQQLEQEEIKMEQRSPLQEQYPQRPTSRDGTDRITPKKEPEDTEEPVEEETEDFEETTRRYLASPPSSANPPSQPQTYEDCSMDSKISGRLEADGDMEVDEETEEQPENLSSRGTAGRLPQQIVAYPGASPASSSASSGSVQTSFAGILFPGPPAHHQIPHHTVANASVTPTVSAPEMIVDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPQLRVFHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSLEQIQADEVNEFPPGYSHHPLASFLPQGFPPIHPTSAGFSLGFPPSRQPTIERQHQKNDVDVKEEPQQQQHQQQQQQQHQLLHHQQQQQQQQQQRYMEEHNEEVEEQEDEEEDRREDDERCEVNRDRCIPDTEEEQDHENEESEQKEISLSTFSTSLAALENQVRTITTTATGTASNVARSPSYHRYNGSDKSNSPPTGGAPLDLTPRASSTPASVSSAATPPPQTTPHHAHPFGMFAGLLQTVSSSPSTSTMGSSSSINSVTSMNTVAPGSGASGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKNAGSDVCSSCAEQRKPFTIKGTPQTNNRYQSEERRTSTSGNEEKPKRRRRRPEERKNRGRTGTGGGRGLTSIYSTVRLPPLMPPALGLLTSDHVFLGNMKQHMLTHKIRDMPPHLFTDAKQQHQQQSQDHESSRSPMCSDDLSLPPPPPPPPPPPPVPPTSIESAVPMKRSPPEGDLPAPKRPPSVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPAHSVGAAKYAGLFGSVYSGNGGGFPGDKQPMAPTSNGPLVDGKPAIPTGSMLFQTPSPSHSPGTPSSNSGNQNSASVPSWTTSTGDPLQHHFDREPPSRTENAATPPTARLPPPSAPRGEGLAA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01232554;
90% Identity: iTF_01233833;
80% Identity: -