Vger003555.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- -
- Assembly
- GCA_905340365.1
- Location
- HG996530.1:14798430-14801150[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.6e-06 0.00028 20.9 2.6 2 23 256 277 255 277 0.97 2 12 0.013 0.77 10.0 4.1 1 23 282 304 282 304 0.97 3 12 2.8e-05 0.0017 18.4 0.6 2 23 314 335 313 335 0.97 4 12 0.00012 0.0074 16.4 5.6 1 23 432 454 432 454 0.98 5 12 0.0017 0.11 12.7 1.7 1 22 459 480 459 483 0.90 6 12 3.3e-06 0.0002 21.3 0.5 1 23 522 545 522 545 0.95 7 12 2.8e-06 0.00017 21.6 1.1 1 23 578 600 578 600 0.98 8 12 0.00017 0.01 15.9 4.0 1 23 613 635 613 635 0.96 9 12 0.00016 0.0098 16.0 4.7 1 23 641 663 641 663 0.98 10 12 0.0014 0.088 13.0 3.2 1 23 669 691 669 691 0.98 11 12 4.9e-05 0.003 17.6 6.5 1 23 697 719 697 719 0.98 12 12 0.00023 0.014 15.5 0.3 1 21 725 745 725 746 0.93
Sequence Information
- Coding Sequence
- ATGACAAACCGAAGTAACTATTTATGTCGCGTTTGTCTCTCGTCGAGCAACGATAATCAACGCATCTTTTCCACGAACGAAAGTGCGCACGAGACGAGAGACAAGAGCGTGCACGACTTGTCGAAAAAGATACGATTGTGCGGAGGTATCGAGGTTCTCGAGAACGACGGATTACCGGAGCATATCTGTATAAAATGTATCTCGAGGGTCAACGCGGCTCACGAACTCAGGGAACAATGTCAACGTGCGGACGTGAAGCTGAGAGAATTATATGGCAAAGCGATCAAGACTGGTAACGCTTTGAGATATACCGCGGTAAAAgATCAATATTGTCAAACCGACAAATGTTTGGAAGTTCTAACGGAAGAAGCAGACGGTCGTTCTACTTTACGTAAGGACTTGGTCGTTTGTAACGACGATACTTCTTCCCCGTTTCTAAAAGATACCGTGCTAGTATCAAATGAATTCAACGATAATCCCAAGACCGATAATGAGATATTGCCGGATATGGATAATAAATTCGAGCGGTCGATACAAGAGTTATCCGTCGTCAAAAGAGAAGCTTATCGTACGAGAAGATTGACGATGTTCAAAAGAGTTACCTCGATGGAAAATTTAAGAAATCacaaagaaagacaaaggcagtatataaagaaaaatggtaATGCGAAACACGACGCTGCTGAAAAAGATGGCCCTATAAATACTGAAAGCGCGTGTAATAAGGTAGCCAGAGTTTCCGTTATGGATTCCGAATTAAATCTCGAATGTCCTCGATGTAACAGATGTTATTCCAGTAAGAAATCTTTGGAAAGGCATATTTTAACTCACGACGAAAAGGAATTCAAATGCGAAAAGTGCGAGAAACAATTCTTTCGTGTCGACAAATTACTCCAACACGGTAAACATCACAGGTCGAGTCAAAAGTCAAATTTGGTACCGTgcaaaatatgtaataaaagttttaGGAAAACCGACACTATGGTACGGCATTTGAATGTTCACAAAAGAGTCAATCCTAAGGAAGTATTTTctatattgaaagaaattagGGACAGGAGAAAGCTGGAAAACAGCGTGCAATCTTTAGAGATTAGTAATCGATCTGTCCTTCCCGTAAAAGATCAGAAAAATGTAGAAGATAGAAAGGCGTTCGATAGCGGCGCCAACGatccgataaaaaatttaacgaaacaaGTGTCGGACGCAGAggagaaaatcgataatttttatacgtcCAGTTCTGATTCTAATAGCGACAATAAATCCGATTCTTTCGACAAGGTACCACTTTATCGTTGCAAACATTGCAACAAATGTTATTCCGCGGAAAGGTCCCTTCAGCGTCATCTGTTGATAcacgacgaaaagaaatttgtttgcAATGTTTGTAACATGAAATTCTTTCGGCAGGACAGACTTAAGAGCCATAGAGACAGATATGGACACGACGAGGACAAGGATTGTTCTATACCTCAAAAACCACCGGACGACAAGTCGgccattaaattaataaacagtTGGATCAGAGAAGAATTAGATTCCGATAACGAAGGGAAGGGTTTCCCTTGCGAGATCTGTGGTAAATCTTACGACACGAAGAAATCGTTGTTGAAACATCAGACCAACGCTCACGATGtacaagaagaaaattgtgTAAGCTGCGGTAAGGAATGTGGGTGTGCTGTCAAGCGTAAAGGAACTCGGAAAAGTAACGAAAAGGTGAAAATTTTTACGTGCGTGGAATGCAATAAAacctttgaaaaagaaatcaagttACAAAGGCATATGCGAATACACGAACGTACGAAAGAACAAGATTCGAATTTCAAACGGTTTTTGTGTCATATTTGTAGCAAAACCTTCAGACAAAATACAGGTCTTATGTTTCATATGAGAACCCATACAGGATACAAGCCTCATGTTTGTAAGTATTGCGGACGAGGATTTACGTCAAATTCAAATTGTATTAATCATGAGAGAACGCACACCGGCGACAGGCCATTCGTCTGCCACTTTTGTAGCGCTGCTTTTGCTAAATCTTGCACTCTCAAGGCGCACATTACTACGCATACCGGTGAAGCCAATTATCACTGCAAAACTTGCGGCAAGTCTTTCAGAAGATTAAAGTATTTGAAGGAACATAGATTCACCCATACGGGGGAGAAACCGTATGCGTGCAAAATATGTGGCACGGCTTACAGCCATTCCGGGAGCTTGTTCGTTcacgaaaagaaatgtaaagcCCAGTACAATAATTATCAAGCCACGCCGACTCAAAATACGCAAGATTATGGACAGCCTCAGGGAAATGTCTGCGCGAGCACGCCGGTTATTGCTCCTATCGTTTCAACACTGCCGCAATCTCATTTAAGTAATATCGGTGGTACTTTAAGTTCTCAAGCGAATAAAACTTATATGGACAGCGTTCATCAAAGGATGAACGCGCATGCTGCTGCCGCTGCAGCTGCGGCCGTAGTCGGTACGTCTTCGTTGCACGTACATCCTAGTCCGGATATTCCAGACGTAGCATCGGCGGTAAGAAACATCGCTATCATCGGACAAGTATTTTACTCTTGA
- Protein Sequence
- MTNRSNYLCRVCLSSSNDNQRIFSTNESAHETRDKSVHDLSKKIRLCGGIEVLENDGLPEHICIKCISRVNAAHELREQCQRADVKLRELYGKAIKTGNALRYTAVKDQYCQTDKCLEVLTEEADGRSTLRKDLVVCNDDTSSPFLKDTVLVSNEFNDNPKTDNEILPDMDNKFERSIQELSVVKREAYRTRRLTMFKRVTSMENLRNHKERQRQYIKKNGNAKHDAAEKDGPINTESACNKVARVSVMDSELNLECPRCNRCYSSKKSLERHILTHDEKEFKCEKCEKQFFRVDKLLQHGKHHRSSQKSNLVPCKICNKSFRKTDTMVRHLNVHKRVNPKEVFSILKEIRDRRKLENSVQSLEISNRSVLPVKDQKNVEDRKAFDSGANDPIKNLTKQVSDAEEKIDNFYTSSSDSNSDNKSDSFDKVPLYRCKHCNKCYSAERSLQRHLLIHDEKKFVCNVCNMKFFRQDRLKSHRDRYGHDEDKDCSIPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCEICGKSYDTKKSLLKHQTNAHDVQEENCVSCGKECGCAVKRKGTRKSNEKVKIFTCVECNKTFEKEIKLQRHMRIHERTKEQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQATPTQNTQDYGQPQGNVCASTPVIAPIVSTLPQSHLSNIGGTLSSQANKTYMDSVHQRMNAHAAAAAAAAVVGTSSLHVHPSPDIPDVASAVRNIAIIGQVFYS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01514317;
- 90% Identity
- iTF_01514317;
- 80% Identity
- -