Vger007959.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- -
- Assembly
- GCA_905340365.1
- Location
- HG996538.1:1147830-1150955[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.026 1.6 9.1 0.2 6 21 12 27 6 28 0.86 2 14 1.8 1.1e+02 3.3 0.0 2 20 34 52 33 54 0.90 3 14 0.91 56 4.2 0.3 1 12 240 251 240 260 0.89 4 14 0.38 23 5.4 5.8 1 20 374 393 374 394 0.96 5 14 0.00021 0.013 15.6 0.2 3 23 401 421 400 421 0.97 6 14 0.0058 0.36 11.1 6.0 1 23 432 454 432 454 0.95 7 14 0.003 0.18 12.0 0.2 1 23 473 494 473 494 0.94 8 14 0.00036 0.022 14.9 0.1 2 23 500 521 499 521 0.95 9 14 4.7e-05 0.0029 17.7 4.8 1 23 548 570 548 570 0.99 10 14 1.1e-06 7e-05 22.8 3.9 1 23 576 598 576 598 0.98 11 14 0.0011 0.066 13.4 3.9 3 23 606 626 604 626 0.97 12 14 1.4e-06 8.7e-05 22.5 0.8 1 23 632 654 632 654 0.98 13 14 9e-05 0.0055 16.8 0.2 1 23 658 680 658 680 0.99 14 14 0.0007 0.043 14.0 0.2 1 23 688 710 688 710 0.97
Sequence Information
- Coding Sequence
- atgggaTCATTGAATCTAATTTGCCCGATGTGCTGTGGTGAAACATTTAACGATCCACAGTCTTTGAAGTACCACTTGCTCAGCATGACGGACAATTTGTATTGTCCTGGATGTTCGCAGCGTTCAGATTCGGTAATGGCGTTGATACAACACTTGGATCGATGTGGCCAAGACTCAGAACAGGAGATACATCaagttaataaagaaaatatggagcAAGAAACTTCGAAAGAAACTGTCACAGCTTCCGAAGTCCTAATGgatACAAATATCGAGCAAATTAATCAAACCTTTTTAGCAACTGTAAATAATAGTGGTATTATGATAGTAGGAGGATCTGAAACTATTCAAGTTGATGAAAATGGAGACATtaaagtaatagaaaagatGGATACAGAGAAATCACAAGTAGATCATAATTCACTGGACTTCAATATGACTGAAAAATTAAACagtattattaatgaaacagTAGAAGAATCTTCAACTTCAAATTCATTAGTAACTCCATCAACATCTGGCATAGAAGATAAATCagcagataaaaatataattaccaTTTTATCCAGTAGTTCTGAACTTTTGGTTGGAGATACTAGTACTTTGATAAATTTGGACAATATAAATGATGTTGGTGAAATTAATGATCCTGCATTACTTCGTGTTAAGCAGGAAATCTGTGAGGTAAAAGTAAAGGAACTAGAACCAGAAGCAGTTTATAGTTGTACAAGTTGTGACATGAGCTTCAATTCTGTTTTGGAACATATAAAACAGTATCATGATGGTCAAGAAGTGTTGCTTGAAATGGCAGAACCATTAGATGAATTACCATCCGTACCCAcgacttctactactactgttgTCCCAAGTGAACCTGAGAATGCTATTAATCCACAACCTGAAACTATGAATACGCTTTGTAGCGAAGAATGTGTAGATAGCGAAGGAAGATTATATACTAGAAAAGTTgtacaaatagaaaaattttgggATAAAACTTCAATCGTACCACCCACCACCCAATCCACAAAGGCACCGatgatcgaaaaatttttttccaatgtaGAAGGCGTGAAGgTGAGTGAGAAAACAACAGTTCCCACTGCCCCATCGAAAATGTACAAATGTAATCAGTGTTCGCAgcaatttacaaaattaacaTGTTTTGAAGAACATATATGTCCTAATGGTAATAATCATTGTGACATTTGTGATCAAGCATTTGCGACACCAAACGCATTACAAATTCATTCAAAGATACATGAAGGTGACACTGATTCTAACCAACAAGTGTTCCTATGCACTACATGTGGTACTGAGTTTTGTTCGCACAAAAGCTTACGATTGCATTCTCGAATGCATGCGCCAGTGAGAGCACGACATGTTGATGCACCAGAAGGAACTCTTGACGCAACATTTACTTGTCCTGAGTGtgGTAAAACCTTATCAGAATCATATAAAGAAGCACACATGTCGCTGCATACAGGTGATTCCGTAACATGTACAAtttgtaatagaaaatttgattCTGCCGATAGTTTGGCGATGCACGCTGCAGTACACAACGAATTGAGTCAGTCACAATCTCCGACTCCTCCCGTTGTAAACGAAGTAAATGATTCTGTCGAAACACAGAAACCTTATCAATGCCAACACTGTGGTCGACGATTTACTAGACCACATGAGAAAGTAAAGCACGAACGTATTCATACTGGAGAGAAGCCTCATGTTTGTGAAGTTTGTGGTAAAACCTTCCGTGTTTCATACTGCTTGACATTACATATGAGGACGCATACAGGAGTAAGACCATATGGATGTCAACATTGTGGCAAAAGATTTAAAGCTTCTTCAGTATATAATCATCATTTACTTACGCATGGAGAAGAGCGTGCTTATACTTGTCCTTACTGTCCCAAAACTTTTAAAACCAGAGTTCAATTAGCTGGTCATAAAAACAGTCATACAAAGCCATTCCGTTGTACTGAATGTTCCAGACCTTTTGCATCCTTATATGCAGCAAGAGCACATATCCAAACAcacaaaaaagataataatttaaaatttagtTGCTATGTCTGCGGTGCATCTTATGGCAGAGCATTTGCTTTAAAAGATCACTTGAAACAGCATGGTCAAGATACATCGATTCCACCGGAACCTGcccgagaagaagaagtacgCGAAGGCGATAACTTCTTATTTCCAGAAGAGGATATGGAagatgataaattaattataccaCCTTCTGTAACTGTCGCACAATCTTCTGGGGCAGAAGATACAGATTAA
- Protein Sequence
- MGSLNLICPMCCGETFNDPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQDSEQEIHQVNKENMEQETSKETVTASEVLMDTNIEQINQTFLATVNNSGIMIVGGSETIQVDENGDIKVIEKMDTEKSQVDHNSLDFNMTEKLNSIINETVEESSTSNSLVTPSTSGIEDKSADKNIITILSSSSELLVGDTSTLINLDNINDVGEINDPALLRVKQEICEVKVKELEPEAVYSCTSCDMSFNSVLEHIKQYHDGQEVLLEMAEPLDELPSVPTTSTTTVVPSEPENAINPQPETMNTLCSEECVDSEGRLYTRKVVQIEKFWDKTSIVPPTTQSTKAPMIEKFFSNVEGVKVSEKTTVPTAPSKMYKCNQCSQQFTKLTCFEEHICPNGNNHCDICDQAFATPNALQIHSKIHEGDTDSNQQVFLCTTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTLDATFTCPECGKTLSESYKEAHMSLHTGDSVTCTICNRKFDSADSLAMHAAVHNELSQSQSPTPPVVNEVNDSVETQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHVCEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGQDTSIPPEPAREEEVREGDNFLFPEEDMEDDKLIIPPSVTVAQSSGAEDTD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01514309;
- 90% Identity
- iTF_01514309;
- 80% Identity
- -