Vger003893.2
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- ZBTB41
- Assembly
- GCA_905340365.1
- Location
- HG996531.1:5563134-5564504[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00025 0.016 15.4 0.2 1 23 91 113 91 113 0.95 2 12 3.7e-07 2.3e-05 24.3 1.6 2 23 120 141 120 141 0.97 3 12 6.9e-06 0.00043 20.3 5.3 3 23 176 196 175 196 0.98 4 12 0.00014 0.0088 16.2 4.8 2 23 202 223 201 223 0.97 5 12 0.00098 0.06 13.5 0.1 1 23 228 250 228 250 0.98 6 12 3.9e-06 0.00024 21.1 2.1 1 23 258 280 258 280 0.98 7 12 0.0036 0.22 11.8 1.8 1 23 286 309 286 309 0.94 8 12 0.00012 0.0073 16.4 0.3 3 23 322 342 320 342 0.96 9 12 6.7e-07 4.1e-05 23.5 1.8 1 23 348 370 348 370 0.96 10 12 1.7e-08 1.1e-06 28.5 0.2 1 23 376 398 376 398 0.98 11 12 1.4e-07 8.3e-06 25.7 0.9 1 23 404 426 404 426 0.98 12 12 0.00031 0.019 15.1 1.7 1 21 432 452 432 453 0.96
Sequence Information
- Coding Sequence
- ATGTGGCCATTTGAATTTTCACATTTCAGGTATCACAACCGGCTACCCTTTTCCGAAGACTATTACCCGATGGTAATGTTCGCGAAACTCGACCTGGTAAAGAAGGACGCGGAGCCCGAGAGGAGATCAACCGTAACGAAGTGTCCGGAAGAAGGTGCGAGcgaagaaggaggaaataATTTAACGATCGGTGCCATTGATGATGGAGAACGAAAGGTGATAAAACAGGAGGTAGAGGCTgacgacgaagaggaggatCTTTCTTTGACGTATAACTGCAAATTATGCGGCGTTTTCTTCGCCAGTCAAACTCTTCTGGAGAATCACGAGATCGAGCACAAGGGTAAGCGTAAAAATACTTGCGCTCAGTGCGGCCGAGTATTTCGGACTTATGTGAATCTACGAAAACACATGAAGAAGCACAACGGTCGTAAGGGGACGCGTAAATCGAGTGGGACCTCGATGGTTAGCAGATCTACGTCTTTGAAGAAggtcaagaaagaaaaaccagaATTGGAGTTACTTTGTAAGACCTGTAACAAGGTTTTCCGGCACAAGAGCAATTACCAAAAACACTTGTTACGACATACCGTGGGTGATCTCACTTGCAAACACTGCCCGAAAAAGTTCCGTCTCTTTCGTGACCTCACAAGGCACGAGAAGACCCACTTCTATCCGAGTTATATGTGCAAGCAATGCGACTACGAGACTACGGTGTTAGCTGCTCTTAGCATTCACATGTTACGGCATACGGACAAGGCCGATCTACCGTTTAAGTGTAACGAGTGCGACAAACATTTCCGCAAGGCTATCGATTTGCAGGAACATTACAATATTCATTCCGGTGATAAGCCGTTTGTCTGTCAAGTCTGTGGAACGGCTTTCTATCTAAGAAGACAACTCTCGGCACATTGTCGTCGAATGCATCCAGAAATGAAGGCCAACAAGGTTACGAGCACTGCTTGTGACATATGTGGTCGTGTTCTTGCCACTAAAAGGTCATTGTTTCGTCACAAGGAAAGCCACAACCCCACCAAACTCTATCTTTGCGATTACTGTGGCAAAAGTCTCAGCAGTGCTGAACATTTGAAGAAACATCGGCGTATTCATACCGGCGAAAAACCCTATGTATGTGACATCTGTGGGAAAGGATTCACCGATTCGGAGAATCTCAGGATGCACAGGCGCGTTCACACCGGTGAGAAACCATACAAATGCGATCAGTGTCCTAAAGCATTCTCACAAAGATCGACTCTAACTATACATAGACGTGGGCACACTGGAGAGAGACCTTATGTCTGTCAGATCTGTCATCGTGGTTTCTCCTGTCAAGGTAATCTCACAGCACACCAGAAGTCTACttgcgtttaa
- Protein Sequence
- MWPFEFSHFRYHNRLPFSEDYYPMVMFAKLDLVKKDAEPERRSTVTKCPEEGASEEGGNNLTIGAIDDGERKVIKQEVEADDEEEDLSLTYNCKLCGVFFASQTLLENHEIEHKGKRKNTCAQCGRVFRTYVNLRKHMKKHNGRKGTRKSSGTSMVSRSTSLKKVKKEKPELELLCKTCNKVFRHKSNYQKHLLRHTVGDLTCKHCPKKFRLFRDLTRHEKTHFYPSYMCKQCDYETTVLAALSIHMLRHTDKADLPFKCNECDKHFRKAIDLQEHYNIHSGDKPFVCQVCGTAFYLRRQLSAHCRRMHPEMKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSTCV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00866161;
- 90% Identity
- iTF_01514300;
- 80% Identity
- -