Vger009759.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- lola
- Assembly
- GCA_905340365.1
- Location
- HG996542.1:5017157-5021770[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3 3.9e+03 -2.6 0.0 3 20 101 118 101 119 0.75 2 2 4.6e-09 6e-06 25.6 0.1 9 40 418 450 417 455 0.87
Sequence Information
- Coding Sequence
- ATGGAGGATGACCAGCAGTTCTGCCTTAAATGGAACAATCATCAGAGCACACTGATACAAAATTTCGACACGCTTTATGAAAGCGGTACGCTGGTCGACTGCACGTTGGCAGCGGAGGGGAAATACCTAAAGGCCCACAGGGTAGTCCTCTCCGCGTGCAGTCCATATTTTGAGGGCCTCCTCAGCGAGCACTATGATAAGCACCCTGTATTCATACTCAAAGatgtaaaatttaaagaattgaAGGCGATGATGGATTATATGTACAGGGGAGAAGTGAATATCTCCCAAGACCAACTAACGGCACTCCTTAAGGCTGCCGAGTCATTACAAATTAAGGGCCTTTCGGAAAGTAAAACGGGCGGTGGTAACAATAAAACAGTTTCGAGGGTATCTAAAGTCGCGCCACAGCCGAGGTCATCGCCGTTAAACATTTCCTACGCGTCTTCCGGTCTCACCATTGAAAGGAACAGAGTTCCTAGACAGGCACAAAGTTCTATAGGGGATTTGCCCGAAGACTCGCACAGTCCCCAAATACCTAAGGAGCTTTCCTCgagGGAGGGCTCGCAAAGTCCAAcatcaaagaaaagaagaagacttAGAAGAAGAAGCGTCGGTGAAGATAATTCCGTAGAAAATCACGAAGCATCGAATTCAAGCGATATACCTCAACAAATGGGCGTGCCGGCACTTGCGATAGCACCTGTCGCGGACGAAAAAACGAACGCTGATCCCACGGACTCCCTCGGCAGGTCAGCTTTAATGACGCAGCTGACGAAACCTGCCGATGAGATGCTTCAGATACCACTCGAAAATCCCGAGCCAAATGATAATCTCATCGAGCCAAAGTCCGAGTATTTGGAGGACCAAGAAGAAAGCGTTGAGGATCTGACCCTAGATGATGATATGAATGATTTGAATGAAATTGAGCAGGATACGAATAGGGCCGGGCCGTCCCATGATAACTCTCAACATCCTGGTGGGGGGGCGGGAGCGCGGTCTCGAGGGTCGAGAGGGAATGTAGGTGGTGTTGGTGTGGTCGTTGGTGTCGATGGTGGTGACGTTGGTGACGTCGTTGTTGGTGAGGacgttggtggtggtggtgccgCCCTTTGGGCGTCCCATTTCCTCGATTGTAAAAAAGTGCCGAACACGAGACGTCCTAGGCCAGAGGTTGACGTAGGCGCGTTGCTTAAGTCACTGGCTAACAAACAGGGGAGAAAGTATAGTTTAGATTCGGTTAAAATGTCATTGGAAGCTATATTGCAACAGGGCGTTAGCACCACTCAGGCATCCGAGATGTACGGGATCAATCGGTCGACCCTCCAATTCTATTTGAAAAAGTTGAACGTCGTCAGGAGGAGATGGAGACAACAGCCTAACACCTTGGTCCAGCCTAGACAATCttag
- Protein Sequence
- MEDDQQFCLKWNNHQSTLIQNFDTLYESGTLVDCTLAAEGKYLKAHRVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLTALLKAAESLQIKGLSESKTGGGNNKTVSRVSKVAPQPRSSPLNISYASSGLTIERNRVPRQAQSSIGDLPEDSHSPQIPKELSSREGSQSPTSKKRRRLRRRSVGEDNSVENHEASNSSDIPQQMGVPALAIAPVADEKTNADPTDSLGRSALMTQLTKPADEMLQIPLENPEPNDNLIEPKSEYLEDQEESVEDLTLDDDMNDLNEIEQDTNRAGPSHDNSQHPGGGAGARSRGSRGNVGGVGVVVGVDGGDVGDVVVGEDVGGGGAALWASHFLDCKKVPNTRRPRPEVDVGALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPNTLVQPRQS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01234270;
- 90% Identity
- iTF_01513560; iTF_01514237; iTF_01514080;
- 80% Identity
- iTF_01513560; iTF_01514237; iTF_01514080;