Vger009348.2
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- retn
- Assembly
- GCA_905340365.1
- Location
- HG996541.1:4296937-4305422[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-21 6.5e-18 64.6 0.0 8 89 126 205 125 205 0.94
Sequence Information
- Coding Sequence
- atgtcCGATAAGAAATCGAATAAAGGCAAACCACCATTAGAACTAGTAGCACTAGCACTAGTACCACCGTCAACCAACCATCAGCCACTACCACACTACCACAGTGCCACTGCACAGTTTCTGCTGCTTCTGCTGCTGATTGTTCTGTTTGCTGCTGATTGTGCTGGTgttgttggtggtggtggtggtggtggtgatggtggtggtgatggtgatggtgttgctgctgctgttgttgctgctgctattGCTTTTGCCATTGCCATTGCCATTGCCATTgccgttgctgttgctgttgctattGCTATTGCTGTTGCCGTTACTACTGTCAGATTACACCGACGCGAAGCGTTAACTCTACTCGCGGGCCCTAACCGTTTACGAGCGAGTTTACGTTTACGCGGAACGCCGATCAATCGGTTACCGATCATGGCAAAATCAGTATTGGATCTTTACGAACTATATAATCTTGTGATCGCTCGTGGCGGTCTGGTCGACGTTATAAACAAAAAGCTTTGGCAGGAAATCATCAAGGGTCTCCACCTGCCTTCTAGCATTACTTCCGCTGCATTTACTCTTCGCACTCAatACATGAAATATCTCTACCCATATGAGTGCGAAAAACGACGATTATCAACTCCCGCGGAACTTCAAGCAGCGATCGACGGAAATCGTCGAGAAGGCCGCAGGAGTAGTTATGGCACATACGCTGCCGGTGGACCAGGTAACGAGGGCTTGGTCCAAAGAAATCCACCGAACTCGCTGGCATTGCGAGCTCAAATGTCACCATTATCATTGGTGACAGCGGTGTCGGGTCATCACGGAGCTGGACAGTCATTGGTTAACGGACATTCAGCTCACACGAATTTACcgcaccatcatcatcatcacccgCACCATGCTCAACATGCCCAAGGACCGTTGAGCCAACCTCCTACCTTGTCTATGTCAAATTTAGCACCATCCGAGTTTGAAGCACGTATGGTAGAGtacgtaaaattattaaataaggaATTAAGAAATGCAGGAGCAGGTACTCCGCCACCGATAATAAATCGACAAGGTAGTTCGACACCACCTCCATCGACACCTCCTAAAGATGCAAATACGAGCAATTATGAGATGTCGCGATTAACATTATGGGGAATGTACGGCAATAATAACCCCATATATTCGGCAGTGATACACCAACCATCGTTATCACCACAAACCTCACAATCGCCGTTACAACAAGCGTCCAGTCCAGAACCGCAAAGAGAAGCGTTAGATCTTGGACTGAGGTCCTCACCCGTATGTTCCTCGCCATCTGGACCAAGTCCTTTATCATCTGGCAGCAGTTTTCACACCAGAAAGGACAATGAACAAGGTCCACCAGCTGCCAAAAGACTGCTATGCGACGAGGATAACCCACCAGATAAAAATCCTTCTTCCTCCACAGGAACACACATCAAGATCTGCAATCGaggAGATGGAAAAAATGGTGAAAATTCTCTAGTAGTCAGCGTGGAACTGAACGGTGTCACATATCAAGGAGTTCTTTTTGCCCAAACCGATTCGAAGAATACAacctcatcatcatcatcaacgaCGTTGACCCATAACGAAAATGGAAAAACTTCACGGAGCATTGCATCGTGA
- Protein Sequence
- MSDKKSNKGKPPLELVALALVPPSTNHQPLPHYHSATAQFLLLLLLIVLFAADCAGVVGGGGGGGDGGGDGDGVAAAVVAAAIAFAIAIAIAIAVAVAVAIAIAVAVTTVRLHRREALTLLAGPNRLRASLRLRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYAAGGPGNEGLVQRNPPNSLALRAQMSPLSLVTAVSGHHGAGQSLVNGHSAHTNLPHHHHHHPHHAQHAQGPLSQPPTLSMSNLAPSEFEARMVEYVKLLNKELRNAGAGTPPPIINRQGSSTPPPSTPPKDANTSNYEMSRLTLWGMYGNNNPIYSAVIHQPSLSPQTSQSPLQQASSPEPQREALDLGLRSSPVCSSPSGPSPLSSGSSFHTRKDNEQGPPAAKRLLCDEDNPPDKNPSSSTGTHIKICNRGDGKNGENSLVVSVELNGVTYQGVLFAQTDSKNTTSSSSSTTLTHNENGKTSRSIAS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513954;
- 90% Identity
- -
- 80% Identity
- -