Basic Information

Insect: Vespa mandarinia
Gene Symbol: -
Assembly: GCA_014083535.1
Location: JACHAV010000032.1:728648-733416[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0019 0.14 12.2 0.2 3 23 475 497 474 497 0.94

2 10 0.0015 0.11 12.6 1.3 1 23 503 527 503 527 0.98

3 10 0.00012 0.0089 15.9 0.4 1 23 533 557 533 557 0.97

4 10 0.0012 0.085 12.9 0.4 2 23 564 587 563 587 0.93

5 10 0.0033 0.23 11.5 3.9 1 21 594 616 594 618 0.95

6 10 5.8e-05 0.0042 17.0 0.4 2 23 626 649 625 649 0.95

7 10 2.3e-05 0.0017 18.2 1.8 1 23 655 679 655 679 0.93

8 10 6.3e-05 0.0045 16.9 0.7 1 23 685 709 685 709 0.94

9 10 5.1e-05 0.0037 17.2 1.6 1 23 715 737 715 737 0.99

10 10 4.7e-05 0.0034 17.3 1.2 1 23 824 849 824 849 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0019	0.14	12.2	0.2	3	23	475	497	474	497	0.94
2	10	0.0015	0.11	12.6	1.3	1	23	503	527	503	527	0.98
3	10	0.00012	0.0089	15.9	0.4	1	23	533	557	533	557	0.97
4	10	0.0012	0.085	12.9	0.4	2	23	564	587	563	587	0.93
5	10	0.0033	0.23	11.5	3.9	1	21	594	616	594	618	0.95
6	10	5.8e-05	0.0042	17.0	0.4	2	23	626	649	625	649	0.95
7	10	2.3e-05	0.0017	18.2	1.8	1	23	655	679	655	679	0.93
8	10	6.3e-05	0.0045	16.9	0.7	1	23	685	709	685	709	0.94
9	10	5.1e-05	0.0037	17.2	1.6	1	23	715	737	715	737	0.99
10	10	4.7e-05	0.0034	17.3	1.2	1	23	824	849	824	849	0.96

Sequence Information

Coding Sequence: ATGTCTCGTAAAGGAGTTCCCTCCGCTTCTAAGTCAAAACAAGTCCCGCGAATCTTTCGTAACCGTCGAGCCCCATCGTTCGCTCGTGTTTGGACTCACGTGGACGTAGGTATCGGTTCAATTACATCTGAACAAAACGATACGAATTCTCTAACGTCTTCGCCGGACGATAGAAAAAGACGAATCgacgataaaaaaggaaaagtgaaAGCAAGAAATAACGAGGAAACGATCGGTTATACCGAAAAGGTTTGGTGCTTAGATTATTCGTCGATTCACAACGGTGTTCTTTCAGATAGTGGTGTTGATTTAATCGAAAAGACAACAGACGTTGAGACAGTTGCCGACATCGAGAAATGGTTGAAAACACGAACCGAGTCCGTGTCAAGCATGGACTTAGACGTTATCAAGTCGGAGGTAGAAGAAGGCGTCGAAAGATATTTGAACAACGAATTGCCACACTCTTTCCTGGGAAAGGATCCTGATGCACTCTCTATAGATATAGATTTGTCCGATAAAAAACTTAACCTTAGTTATGAGCATTCCATACTTCAAGAACTTCAGACTGAGAAGCTGTTGGAGGTCTGTGAAAAGGATGATGAATTCATATTGCCTGAATTTAGATTGGATCAACTTGatcctttatctctttcaccTGACGATATGATGGTAGCTGGAGAAATTTTACCATCCACCAGTGTTCCAACATCTTTGAATACACCCAATGATCATCTAACTGATACATCTATTCAGTCAGAAGAAGGAGTCCAATTGATAGGCGAAGGAGAAGAAACAGAGAATCATACTTCGGCGGATGATTCTGTAGAAATGGCAGATTTACCTatcgattttgaaaatattaatgttatgcAAGAAACTTCAGAATCTAATAATATCGTTTCCTCTCCCAAAAGTACATCAAATTCTTTTACAGATGtacttaataatgataatgttatagaaaatacaacaggtattattaatatagctAACTCGGGCAATATAATTATGGAACAATTGAAATCAAAGGCACGAATAAAATTGGAACCAAGGATTATCAAAAAGCGTAGAAAATTATccgaaaaatttgataaaaaagtaGAATCAAAAGAAGGCGTAATGGCTGTTGTTGCTATATCAACCgacaaaatttctaatatgacgcaaattgttattaatactgGTACAGAGGAACAAATATATCAGGGTAAAACGTCAGAATTGATTGAAGCTACCGGAAATTTTCCAAAACTGCCAAGAATAGATACTTCCTCTGGTTGGACTGGAACTTCCGAGTGTAATTCTGAAATGAATCCAAGCAGTCAACATGAAATGATAATATCTAATGCTTTAGCAGAATTAGGCGTTACAGATGACAATTTGCAACCTGTTTCAATAAGTGAGCACGGGAAACTGTGGTTATGTCCACGAGAAGATTGCAATAGACAATTTAGTAGACTTTATGCTTTAAAAGGACACTTGCTAGCACATTACGGAGTAAGACCATTTAAGTGCGACTACGAGGGATGTACATGGGCATTTTATTctgaatttaaattaaaacgacATAAAGAAACTCATTCAAAACGTAAGGATTATGTTTGTAAAGTAGAAGGTTGCAATAGAAGATTTACTaccatatataatttatggaGTCATGAGAAATTACATAGTCGTCCAAATAGAATCACGTGTCAAGTACCAAATTGTCaggaaaaatttcaaacaaaAAGAGCACTTGAATTGCATATGAAATCACATGATCAGAGCCATGCTCCTTATGTTTGTAAGCATGAAGGTTGTGGTAAAAGGTATTATAGTAGTAATGCATTAACATCACATCAAAGGTGTCACAGTTATAAAGAAATTGATGTAAAGTGTTCATGGCCTGGATGTGGTAAGGTATTTGATAAACCGTGTAGACTCAAAGCACACATACGTTCTCATACTGGGTGTAAGCCATATCTTTGCACTTTTCAAGGCTGTCAGTGGGCTTTTTCATCATCCAGTAAGTTGAAAAGGCATCAAAAAAAGCATACTAATGAACGGAAATTTATATGTGATGTTGCTTCCTGTGGAAAAGCATTTATGAGGTCTGAACATCTTAAAGAACATAGATTGACGCACAAGGAAGGGAGGTACTTTCAATGTTACATATGCAATACACAATTTTCTGCAAAAAGTAGTTTGTATGTACACATTAAGAAACATCAAAATAAAGAAGACATAGAAAGAAATTCACGCGAATCTTCAAATAGTCAAAAAAGTGTTAAAACAACAGAATCTCATTGTTCTAGAGTAAATCctgttataaaattgaaaaaaaaatctatagaaTTTAACGAAGAACTTATTTCCCAGAATGCTTCTGTACCAGTATTGTCTCAACAATGTGAATCAAGTTTAAATAATGGCAGTGAAAATCAAAGTTTAGAAGTTATAACacatcaaaatgaaataaaaactttatatcatTGTCCTGTAGAGACATGTACAAGATCATATAGTACAAAAGCTACATTAAGAGCGCACATGTCGAAAATACATGGTACACCTATTGGAGATTgtgataaatcattaaaaagtaGACTAACAGACATTACAACTGCTAATACGGACTACATTTTATATGCTACACCTTCTTCCACATCAGAAACCACAGAACAAATGATCATGGTAACACCTTGCGATGCTGTTATCGTTAGCGCATCTTCGGAAATGAATTCTTTGCCTGAAACGCAACCACCTCTCTTAAGCACAGTGCTAAGAAATGATTCTATCCATGAAAATGCAATGAATGAACAATTATTGCAATCAAATCTCAGAAAAGATCATGGCTCTGCAAGGACCAGTTTAACATTTTCAGATGTGtggaaattaaaaacaaatagtGCATCAATGAACTCTGTTGCAGGAGCATCGGATGTTATATTAGGTGCAAGTGACATGGAAGAAGAATTATTGTTTACTGAAGAATTACCATCAATGTATTATCAAGATGATGTGGGAGGAACAGAATATCAAGTTTTATTACTTGACTCAGGACCATCAGAAAGTGCTGTAAATTTGCGTGGTCTTGAATAA
Protein Sequence: MSRKGVPSASKSKQVPRIFRNRRAPSFARVWTHVDVGIGSITSEQNDTNSLTSSPDDRKRRIDDKKGKVKARNNEETIGYTEKVWCLDYSSIHNGVLSDSGVDLIEKTTDVETVADIEKWLKTRTESVSSMDLDVIKSEVEEGVERYLNNELPHSFLGKDPDALSIDIDLSDKKLNLSYEHSILQELQTEKLLEVCEKDDEFILPEFRLDQLDPLSLSPDDMMVAGEILPSTSVPTSLNTPNDHLTDTSIQSEEGVQLIGEGEETENHTSADDSVEMADLPIDFENINVMQETSESNNIVSSPKSTSNSFTDVLNNDNVIENTTGIINIANSGNIIMEQLKSKARIKLEPRIIKKRRKLSEKFDKKVESKEGVMAVVAISTDKISNMTQIVINTGTEEQIYQGKTSELIEATGNFPKLPRIDTSSGWTGTSECNSEMNPSSQHEMIISNALAELGVTDDNLQPVSISEHGKLWLCPREDCNRQFSRLYALKGHLLAHYGVRPFKCDYEGCTWAFYSEFKLKRHKETHSKRKDYVCKVEGCNRRFTTIYNLWSHEKLHSRPNRITCQVPNCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSHQRCHSYKEIDVKCSWPGCGKVFDKPCRLKAHIRSHTGCKPYLCTFQGCQWAFSSSSKLKRHQKKHTNERKFICDVASCGKAFMRSEHLKEHRLTHKEGRYFQCYICNTQFSAKSSLYVHIKKHQNKEDIERNSRESSNSQKSVKTTESHCSRVNPVIKLKKKSIEFNEELISQNASVPVLSQQCESSLNNGSENQSLEVITHQNEIKTLYHCPVETCTRSYSTKATLRAHMSKIHGTPIGDCDKSLKSRLTDITTANTDYILYATPSSTSETTEQMIMVTPCDAVIVSASSEMNSLPETQPPLLSTVLRNDSIHENAMNEQLLQSNLRKDHGSARTSLTFSDVWKLKTNSASMNSVAGASDVILGASDMEEELLFTEELPSMYYQDDVGGTEYQVLLLDSGPSESAVNLRGLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01090184;
90% Identity: iTF_01513665;
80% Identity: -