Vman008338.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- Prdm15
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000086.1:467452-470317[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2e-06 0.00014 21.6 0.9 3 23 255 275 253 275 0.97 2 12 0.0082 0.59 10.2 3.4 1 23 280 302 280 302 0.97 3 12 2.1e-05 0.0015 18.4 0.6 2 23 312 333 311 333 0.97 4 12 0.0002 0.015 15.3 5.6 1 23 431 453 431 453 0.98 5 12 0.0013 0.093 12.7 1.7 1 22 458 479 458 482 0.90 6 12 3.4e-06 0.00025 20.9 0.9 1 23 521 544 521 544 0.95 7 12 4.4e-05 0.0031 17.4 1.0 1 23 577 599 577 599 0.96 8 12 0.00013 0.0091 15.9 4.0 1 23 613 635 613 635 0.96 9 12 0.00012 0.0086 16.0 4.7 1 23 641 663 641 663 0.98 10 12 0.0011 0.076 13.0 3.2 1 23 669 691 669 691 0.98 11 12 3.6e-05 0.0026 17.6 6.5 1 23 697 719 697 719 0.98 12 12 0.00017 0.012 15.5 0.3 1 21 725 745 725 746 0.93
Sequence Information
- Coding Sequence
- ATGACAAACCGAGATAACTATTTATGTCGCATTTGTCTCTCGTCGAGCAACGACAATCAACGTATCTTTTCGACGAACGAAAAGTATAATACAAGAGACAAGCACGACTTGTCGGGAAAGTTATGGTTGTGCGGAGGCATCGAGGTTTTGGAGAACGACGGTTTACCGGAGCGTATCTGTGTAAAATGTATTTTGAAGGTCAACGCGGCCCACGAACTCAGGGAACAGTGTCAAAGAACGGATATAAAGTTGAGAGAATTGTATGGGAAAGCGAGGAAGACGGTTGACGCTTCGAGACATAACTCTGTAAAAGATCAATATTGTCAAACCGATGAATATTTTGCGATTTCAACGAAAGAAGGGAACGATGATCGTTCTCCTTTGTGCGAGAACGTTGTTGTTGGTAGTAGTTATGACGAGGGTTCTTCTCTTCTGGATCTAAAAGGTACTACCGTTAGAGTATCGAACGACAATGTTAAGACCGAGAATGAGATATTGCCAGATACGGATAATAAATTTGACCGTTCGATACAGGAGTTGTCGGTTGTCAAAAGAGAAGCCTATCGTACGAGAAGATTGGCAATGTTCAAAAGAGTTACCTCGATGGAAAATTTAAGAAATCacaaagaaagacaaaggcagtatataaaaaagaacggTAATACGAAGTCTCACGATGCTGGTGAGAAAGATGGGTCTTTAAATAACGAAAGCGCATCCAATAAGGCAGTCAGAGTTATCGATTCCGAATTAAACCTCGATTGTCCTCAATGTAACAGACGTTATTCCAGTAAGAAATCTTTAGAGAGGCATATATTGAcccataatgaaaagaaattcaaatgcGAAAAGTGCGAGAAACAATTCTTTCATGTCGACAAATTACTACAGCACGGTAAACTTCACAGGTCGAACGATAAGTCAAATTTGGTACCGtgcaaaatatgtaataaaagttTTAGAAAAACCGACACCATGGTACGGCATTTGAACGTTCACAAAAGGGTCAATCCTAAGGAAGTATTTTctatattgaaagaaattagggatagaagaaaattagaaaacaaCGTGGTATCTTTAATGATTAACGACCGATCACCGTCCGTAcaagacaagaaaaatattgttcaGGATCAAAGGTCACTCGACGTCGATGGCGAGGACGACACGTTGAAAAATTCAACTAGACGAGTGTTGGATACGGaggaaaaaattgataatttttatacgtcCGGTTCTGATTCCAATAGCGATAACAAATCTGATTCCTTCGAAAGCGTAGGAATTTATCGTTGCAAACATTGCAACAAATGTTACAACGCGGAAAGATCTCTTCAGCGTCATCTCTTGATACACGACGAAAAGAGATTTGTTTGCAACgtttgtaacatgaaattctttcGGCAGGACAGACTTAAGAGCCATAGAGATAGATATGGTCACGACGAGGATAAAGATTGTTCTATACCTCAAAAGCCACCGGACGACAGGTCGgccattaaattaataaacagtTGGATCAGAGAAGAATTAGATTCTGATAACGAAGGGAAGGGCTTCCCTTGTGATATATGCGGTAAATCTTACGACACGAAGAAATCGTTGTTGAAACATCAGACGAATACTCACGACGTGCACGAGGAAAATTGTTCGAGTTGCGGTAAGGAATGTACCTGTGGTATAAAGTTTAAAGGAACAcgaaagaataatgagaaagtGAACATTTTTACGTGCATCGAATGTAATAaaagttttgaaaaagaaatcaagttGCAAAGGCATATGCGAATACACGAACGTACGAAAGAACAACAGGATTCgaattttaaacgatttttatgtCACATTTGTAGCAAAACTTTCAGACAAAATACAGGCCTTATGTTTCACATGAGAACTCATACCGGATATAAACCTCATGTTTGTAAATATTGCGGACGAGGATTTACGTCAAATTCCAATTGTATTAATCACGAGAGAACGCACACCGGCGATAGGCCATTCGTCTGTCACTTTTGTAGCGCTGCTTTTGCCAAGTCTTGCACCCTTAAGGCGCACATCACTACGCACACAGGCGAAGCTAATTATCATTGCAAAACTTGCGGCAAATCTTTCAGaagattgaaatatttgaagGAACATAGATTCACCCATACCGGGGAAAAACCATACGCGTGCAAAATATGTGGCACCGCTTATAGCCATTCCGGTAGCTTATTCGTTcacgaaaagaaatgtaaagcTCAGTACAACAATTATCATCAGGCTGCTCCTCCGGCTACTCAAAATACTCACAATTATGGCCAATCTCAAGGAAATGTTTGCGCGAGCACGCCGGTCATAGCTCCTATTATTTCAACGCTGCCGCAATCTAATTTGAATAACATCGGTAATAATTTAGGTTCTCAAGCGAATAAAACTTACATGGATAGCGTTCAAAGGATGAACGCGCAtgctgccgccgccgccgccgcagCTGCGGCCGTAGTCGGTACGTCTTCGTTGCATGTACATCCTAATCCGGATATTCCAGATGTAGCATCGGCCGTAAGAAACATTGCCATCATCGGACAagtattttattcttaa
- Protein Sequence
- MTNRDNYLCRICLSSSNDNQRIFSTNEKYNTRDKHDLSGKLWLCGGIEVLENDGLPERICVKCILKVNAAHELREQCQRTDIKLRELYGKARKTVDASRHNSVKDQYCQTDEYFAISTKEGNDDRSPLCENVVVGSSYDEGSSLLDLKGTTVRVSNDNVKTENEILPDTDNKFDRSIQELSVVKREAYRTRRLAMFKRVTSMENLRNHKERQRQYIKKNGNTKSHDAGEKDGSLNNESASNKAVRVIDSELNLDCPQCNRRYSSKKSLERHILTHNEKKFKCEKCEKQFFHVDKLLQHGKLHRSNDKSNLVPCKICNKSFRKTDTMVRHLNVHKRVNPKEVFSILKEIRDRRKLENNVVSLMINDRSPSVQDKKNIVQDQRSLDVDGEDDTLKNSTRRVLDTEEKIDNFYTSGSDSNSDNKSDSFESVGIYRCKHCNKCYNAERSLQRHLLIHDEKRFVCNVCNMKFFRQDRLKSHRDRYGHDEDKDCSIPQKPPDDRSAIKLINSWIREELDSDNEGKGFPCDICGKSYDTKKSLLKHQTNTHDVHEENCSSCGKECTCGIKFKGTRKNNEKVNIFTCIECNKSFEKEIKLQRHMRIHERTKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYHQAAPPATQNTHNYGQSQGNVCASTPVIAPIISTLPQSNLNNIGNNLGSQANKTYMDSVQRMNAHAAAAAAAAAAVVGTSSLHVHPNPDIPDVASAVRNIAIIGQVFYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01514317;
- 90% Identity
- iTF_01512343;
- 80% Identity
- -