Vman008168.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- -
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000025.1:1094327-1097146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.9e-05 0.0043 17.0 1.1 2 20 147 165 146 168 0.95 2 13 0.00048 0.034 14.1 1.8 1 23 174 197 174 197 0.93 3 13 2.6e-06 0.00019 21.2 0.9 1 23 203 225 203 225 0.98 4 13 2.7e-05 0.0019 18.0 1.1 1 23 381 403 381 403 0.97 5 13 0.00025 0.018 15.0 0.3 2 21 412 431 411 432 0.93 6 13 0.00024 0.017 15.0 2.6 1 20 454 473 454 476 0.92 7 13 0.0035 0.25 11.4 3.3 1 23 481 504 481 504 0.95 8 13 1e-06 7.3e-05 22.5 0.3 1 23 510 532 510 532 0.98 9 13 0.0017 0.12 12.4 6.3 1 23 539 561 539 561 0.98 10 13 0.00029 0.021 14.8 0.4 3 23 569 589 567 589 0.97 11 13 0.00033 0.024 14.6 0.2 1 23 595 618 595 618 0.96 12 13 0.4 29 4.9 0.1 1 23 632 654 632 654 0.93 13 13 0.0044 0.31 11.1 0.0 2 23 917 938 916 938 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTCATGAAAATGAACAATATGTTACATTTCCACTTTCTGGAGTACATGATAATattcaagaaaatataatatcacacGAAGAGATATGTGAACCTGTTGATGATTGTGTACTACAAGATGGTTTAAATGAAGTTCctgttaatgatgttaatactGATATTCAAGAAGCTCATGTTGCTGTCGAAATTTTACCTGATAGATCGGATGAGGAAGATGAAAATCGTAGCgtttatcctatatatatcAAACAGGAGGAACAACAACAATATACTTCTGGCGATGATGAATCAATGGCTGTTGAAGCACTTCGTCAATTAGGTGGCATGTATCCttgttttgaaaataaaaaagtcagTTGTCCTAATTGTGCTAATTTGTTCACACAAATTGAATTTACCAAACATCAGGGTACGTGTAATATAAGTAAGTTATCATGTCCAACATGCGGAGAAACATTTGAAAGGAAAATGgatttaaataatcatatgGTTTGTCATCAAGTTGATCGACCACATGCATGTAGAACATGCGGTAATTTGTTTCGTTCTAAAAGCAGTCTTCAATCGCATATGTTACAAGTTCATCAAATAGAAAGACCTCATAAGTGTACCATTTGTGGTGCAGACTTTCAAAGACCATCTAGCTTATCAAATCATATGAAAATACATACTTATGTAGCTGGACGTGCTATAATGCAATCAAGAGGAAATAATCAATTATCACAGTCTGTGGATACATTTAGAAAATGGTCTGAAAATAATACGTCTGAATCACAAAATGTACCTGTTCCATCTTCGACAGTTCAAActgtacaaaattataatgcTTGTCAAGTTCATTGGGCTGTTCCTGCTTATACTTTTCAAAATGAACAATCGTCTACTGTCAATACAATCTCTAATCATGATGAAAAAATAGATACACTGCATGAATTTAATGTATTACCTAATGGTGAAGTAACACAATTTGAATATACAcaacaaaataatatgaataatcaaaTCAGTCAACAATACAGTTTATCCcttaatacatttaataattcagACAGTATGGTCAAAGTTGAGGCActtacatataataatgacagtagaAGAAATTATGTGGATATGGGGACAGATGTTAATAAACAGCATACATGTAGTCATTGTGGTATTAGTTTTTCAAGAGCAATAGCATTAGTATCACATGAAAAGATTCATACATCTAAAAACTGGATGCCCATTGAATGTGAATATTGTGATAAACAGTTTCAAGATGCAAATCATTTGGCAACTCATCAAACTACTtgcacaaaaaaaattatgcagaataatattgatcaaGGTGTTTCAAATAGTAAATGGGGAAAACATGCTTGCTCTGAATGCGGAAAGAAATTTACAACTAAACAGAAAATGTTTAGGCATCAATGGatacatagaaagaaaacTCATTGTTGTGAAGTTTGTGGAAcacaatttgaaaaacaaaatcaattaGATAAGCACAGATTGTCGGCCCATCCTGGTGATTCACCATTTACTTGTACGGAATGTGGAAAAAGTTTTGTATCACGTCAAGGTCTTTGGGAACATGGTAGAACTCATGCAGGAAGTCCAGCACATTTTCATTGTGATACTTGCTCAAAAACTTTCTCCTCGCGACAAGGATATTTAATTCATCATCGTACTCATACAGGTGAAAGACCATATGGTTGTAAATTTTGTTGGAAAGCATTTAGAGATGGTGGTACATTAAGAAAACACGAACGAATTCATACAGGAGAAAGACCACACGTATGTCCTTTATGCTCTAGAGCTTTTAATCAGAAAGTTGTTCTTCGTGAACACGTTCGATGGGTTCATGCTgcaggaaaaaatgaaactgAAGTTACAGGACCACCTTATCCTTGTCCTTTATGCGGTGCTTTAAATCAAGATCGTGATGAATTGTGCGCCCATATTGTTAAACATTCGGATCAAATGATAGCCGAAGCAAAagcaaaaacaaataataatgctCCTAAATCACGACctacgagaaaaaaaactaaagcATCTATCGTTGAAGGTACACAGGAGAAACAAAAtctagataataatgaaatttcaagattagaacaaaataaagcattattatctataacaGAAGCAATGGATAAAACAGAGTGTCAACAAATTGTAAAtgacaaacaaaataatactTATCTCGTGGTTACTGCtgaaagacataatgaaaactTAATCGCTATATCGGAGCTTAAACACAATAATGTAAGATTAATATTAGATgacaaacaaaatgaaaatgtaaatataacacAGAATGATCATGATCGTGCAGATTCGTATTTAATTACTatgaataaacaaaatgaCACTACACATATTTTACCAGATAATAATGCTCTTCGTGCTATAACTACAACCAGAAACGATGAAGTTGATACAATGCATTTAATACAATCCTCTAAACAAAGTAAtactttacatttattatcaaaaccAAATGAGTCACTTCCCGTTTTGACAATAAGTAATAATCCAGAAGATCATGAAAATTATTCTAGTCAAATAGCGCAGATAGGAAGTACCGATCTACCTATGGATATGGCTACACATGATACATCTAGAGAAGATCAGGCAATAAAAAGTCACAATGGGAATAGGCAGGAATCATTATTACACGAAGGAGTTTCTCAAGGAACAGTTATACAAATTGTTCATTATCAACAAGATAGTGATGATGGAGAAGAACTAGTTTGTGGTATATGTGGGGAAGATTTTACAgataaaaacatattaatgGAACATgttaaaattcatatataa
- Protein Sequence
- MEAHENEQYVTFPLSGVHDNIQENIISHEEICEPVDDCVLQDGLNEVPVNDVNTDIQEAHVAVEILPDRSDEEDENRSVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFENKKVSCPNCANLFTQIEFTKHQGTCNISKLSCPTCGETFERKMDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQSHMLQVHQIERPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQSRGNNQLSQSVDTFRKWSENNTSESQNVPVPSSTVQTVQNYNACQVHWAVPAYTFQNEQSSTVNTISNHDEKIDTLHEFNVLPNGEVTQFEYTQQNNMNNQISQQYSLSLNTFNNSDSMVKVEALTYNNDSRRNYVDMGTDVNKQHTCSHCGISFSRAIALVSHEKIHTSKNWMPIECEYCDKQFQDANHLATHQTTCTKKIMQNNIDQGVSNSKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHCCEVCGTQFEKQNQLDKHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKSRPTRKKTKASIVEGTQEKQNLDNNEISRLEQNKALLSITEAMDKTECQQIVNDKQNNTYLVVTAERHNENLIAISELKHNNVRLILDDKQNENVNITQNDHDRADSYLITMNKQNDTTHILPDNNALRAITTTRNDEVDTMHLIQSSKQSNTLHLLSKPNESLPVLTISNNPEDHENYSSQIAQIGSTDLPMDMATHDTSREDQAIKSHNGNRQESLLHEGVSQGTVIQIVHYQQDSDDGEELVCGICGEDFTDKNILMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01512329;
- 90% Identity
- iTF_01513627;
- 80% Identity
- -