Basic Information

Insect: Vespa mandarinia
Gene Symbol: -
Assembly: GCA_014083535.1
Location: JACHAV010000013.1:5427663-5431035[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00019 0.014 15.3 3.9 1 23 229 251 229 251 0.98

2 11 0.017 1.2 9.2 11.8 1 23 257 279 257 279 0.95

3 11 4.4e-05 0.0032 17.3 6.6 1 23 285 307 285 307 0.99

4 11 0.00031 0.022 14.7 1.6 1 23 313 335 313 335 0.95

5 11 9.6e-07 6.9e-05 22.6 1.9 1 23 341 363 341 363 0.97

6 11 2e-05 0.0014 18.4 1.1 1 23 369 391 369 391 0.97

7 11 5.8e-05 0.0042 17.0 1.6 1 23 396 418 396 418 0.97

8 11 3.5e-05 0.0025 17.7 0.0 1 23 424 446 424 446 0.96

9 11 9.5e-05 0.0068 16.3 0.1 2 23 458 479 457 479 0.96

10 11 1.2e-06 8.6e-05 22.3 2.0 1 23 545 567 545 567 0.97

11 11 1.9e-05 0.0014 18.5 4.6 1 23 577 599 577 599 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00019	0.014	15.3	3.9	1	23	229	251	229	251	0.98
2	11	0.017	1.2	9.2	11.8	1	23	257	279	257	279	0.95
3	11	4.4e-05	0.0032	17.3	6.6	1	23	285	307	285	307	0.99
4	11	0.00031	0.022	14.7	1.6	1	23	313	335	313	335	0.95
5	11	9.6e-07	6.9e-05	22.6	1.9	1	23	341	363	341	363	0.97
6	11	2e-05	0.0014	18.4	1.1	1	23	369	391	369	391	0.97
7	11	5.8e-05	0.0042	17.0	1.6	1	23	396	418	396	418	0.97
8	11	3.5e-05	0.0025	17.7	0.0	1	23	424	446	424	446	0.96
9	11	9.5e-05	0.0068	16.3	0.1	2	23	458	479	457	479	0.96
10	11	1.2e-06	8.6e-05	22.3	2.0	1	23	545	567	545	567	0.97
11	11	1.9e-05	0.0014	18.5	4.6	1	23	577	599	577	599	0.97

Sequence Information

Coding Sequence: ATGTGTACAACCCCTGGCAACGCCGGAGCAGGATTCGGGTATGCCTGGTCCTTTGGTGGGCCTGGTACCGAAACCCGAGAGAACGCACAGAGCGAGCTTGCTACCAATATTAGTTACGCTGTTAATAACAATCAGGACCAAGGTTCCAGTCAAAAGATACAAGTCGATATCAAACCAGCAAAAAACGTTAATAGTGCTCATCGCAGACCTATGTTCGCTATGAATGAAAGTTGTCAACAAACTCCTACTACCCACCACGGTCACACAGGGGCTCATAATCAAACACATGGTTCTCATGTTCGCACTAAAAAGCATCATGATGTTTTTCCATTGAATTGTGAAAAGGGAGGTTGTCAGTGTGATGCTTCACAACCAACGCCTCCACCTTCTCTATTTTCAAACACCTTAGTTTTTACCACAGCTGATAAGCATGCCATGAGTAAGCATTTCATGACACCGCTTGGACCTTTGCAGCTTACTGCAGAAGAGtgcaatgaaattttaatgaaaagggCAGCAGCTGCATCTAATCAAGCAAACTCCAATAACGTTACTACCAGTCAAACGGATGGCACAGCTCACTTTGGACACGTCTTGACTCATGTAAACACTACTCAAATCGAGACTAAAGTTAAGCAACAGCAAGATATGGGGAGCCAAGTTCGTGTACCTAAGGAAAGACCATATTCCTGTTCTGAATGTGGGAAGTCATTTCTACTGAAGCATCATTTAACCACACATGCAAGAGTACACACAGGAGAGAGACCTCATATATGCGTTCATTGTGGCAAGAGTTTCGCTCACAAACATTGTCTTCATACCCACTTGCTCTTACACAGTGCGGAAAGACCTTATCAATGTCGAGAATGTAAAAAGTCCTTTACGTTAAAACATCACCTTGTAACACATACTCGGGTACACACAAGAGAGAGGCCATTTGTTTGCCAGGAATGTGGAAGAGCGTTTCCTCTTAAACGCCATTTAGTCACTCATAGTAAATTTCATTCTGGAGAAAGGCCATTTGTTTGCGAAGAATGTGGAGAATCCTTTTCGCAAAAGGATCATTTAACAATGCATTCGCGCTTCCATGGCAGTTTACATCCATTTGTTTGTCATGATTGTGGGGCTACGTTTCAAAGGAAGTTTGAACTAGTAAACCATGGTCGGTTACATGGTAGAATTCCACATTCGTGTACTGTTTGTGGTAAAGAATTTTTACAGAAGAGAACGCTATTAGCACACATGCGTTTACATACAGGAGAAACACCTTTTGCTTGCACCGTTTGTGGAGAGGCATTCCCGCGTAAAGTAGATTTAGTTACGCACTCCAAGATTCACAATAACAATACGAGTACAGATGAAAAGTCTCTTACGTGCAGGGAGTGTGGATTAGATTTTCCAAACAGAGAAGCCCTTACCTTACACTTAAGGCTACATTCTGGTGATCGAACATTAGTAACGGATTTATGTGGGTTAGCAGCTGCCTTCCAACAAACTCCTGGACACTTCCTAACTCCAAATACTCCTGGAACCCACCAGATGAATGGACCTATCGGAACACCCGGTGTTAGCCATATGCACGGTGCAACGCAAACATCCCCACCAGTTGGTTCGGGTCCTAAACCAAAACCACATATCTGTCCGGATTGTGGCCGCGGGTTTGCTCAAAAACATGGACTGTCGCAACATCAACGACGCCACACGGACGGCAGTTGTCATATAAGGTCACACGTGTGTGACAAGTGTGGAAAGGCTTTCTTCCAGAAGAATCATTTGTTATTACATCAACGTCAGCACATGGATCCTCCGCCGAGTATACTTCGGCAACAACAAAGACAAGCGGCACAAGCTGCCGCTCAACAAGctcaacagcaacagcaagcccaacaacagcaacaggcgcagcagcagcagcaggtccagcagcaacagcaggcgcagcagcagcagcaggcgcaacaacagcagcaggcGCAACAGCAACAGGttcaacagcagcagcagcagcagccacagcaacaacaacaaacgtGTACCGTCGATACTAAAACAATTCAGTTGCAAGCAATACAGCAACAAGTTCAACAACAAGTCCAGCAACAGgtacaacagcagcagcaacagcagcaacaacaagcGTGTTCCGTGGACACAAAAGCAATACAGTTGAATGTCACCATGTGA
Protein Sequence: MCTTPGNAGAGFGYAWSFGGPGTETRENAQSELATNISYAVNNNQDQGSSQKIQVDIKPAKNVNSAHRRPMFAMNESCQQTPTTHHGHTGAHNQTHGSHVRTKKHHDVFPLNCEKGGCQCDASQPTPPPSLFSNTLVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQANSNNVTTSQTDGTAHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICVHCGKSFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRIPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKVDLVTHSKIHNNNTSTDEKSLTCRECGLDFPNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTPGTHQMNGPIGTPGVSHMHGATQTSPPVGSGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQAQQQQQAQQQQQVQQQQQAQQQQQAQQQQQAQQQQVQQQQQQQPQQQQQTCTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQACSVDTKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01509061;
90% Identity: iTF_00684308;
80% Identity: iTF_01512328;