Vman003024.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vespa mandarinia
Gene Symbol
-
Assembly
GCA_014083535.1
Location
JACHAV010000014.1:238611-242516[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00069 0.05 13.6 1.3 2 23 309 330 308 330 0.97
2 11 0.0003 0.022 14.7 0.9 1 23 338 361 338 361 0.94
3 11 0.00048 0.034 14.1 4.6 1 23 407 429 407 429 0.98
4 11 1e-06 7.3e-05 22.5 2.0 2 23 494 515 494 515 0.98
5 11 4.3e-05 0.0031 17.4 1.0 1 23 520 543 520 543 0.96
6 11 4.4e-06 0.00032 20.5 0.3 1 23 581 603 581 603 0.98
7 11 6.4e-07 4.6e-05 23.1 0.9 1 23 613 635 613 635 0.96
8 11 1.8e-06 0.00013 21.7 1.2 1 23 641 663 641 663 0.99
9 11 9.2e-06 0.00066 19.5 0.2 1 23 669 691 669 691 0.98
10 11 7e-05 0.005 16.7 4.6 1 23 697 719 697 719 0.98
11 11 0.00034 0.025 14.6 0.3 1 21 725 745 725 746 0.94

Sequence Information

Coding Sequence
ATGGAATTGTCGGCTGATGGGAGAACCATTAAAAGCTTTGAAGACatacgaataaatttaaacgaagaTTGTCGTATCTGTTTACGAAGGTGTAACGAAGCATGTCAACTGTTTCAAAACGACAAAGGCTTTTCTCAAAAACTAATGGCACTTGCTGCTGTACAGgtagaagaagaagatggattGCCATCAGTAATATGTTATCAATGTTCTCAACTTCTTGACATGTCCTACAATTTTCAATGTCAGATACAAAAAGCAGATACAAAATTACGTGGAATATTGAAACTTAAATCATGTACAGtaaaagatattgaaaatgtattcaaagttgaagataatttttctgatattatctcaaatacaatattacataaaaaagttacagataatattaataatgatgttagaACATGCAGTAACACTATTGATGAACCATCTGTACAACTTGATGTACAAAGTTTTTCCACTGATCAACATGTCTTTACTtctgaaataattaatgataatatagaacCCAATGACAAGTGCAATTCAATAATTGTACTagagaataaacaaaaaacataCAAAGTtgtagaaaatgtaaaattaccTCAAAGttatgaaaaaattacaaataaatcaaatagtGTAACATGTCATTCGCCTAGTTTAATTACAGAAACAGACTGTATTAAAGAGGATTTATctcatgaaaaaaatttatcagaaAGTGATGATAATTCCATTGACCAAAGTACTGTTAGCAGAGAACAAATATTCAAAACTGAAATAAAAGATGAGTTACATTTAGAAGCATTATCCTATAATACACTTGCAGAAAATTcatcaaaaaataatgatattcaaaaagaaggaaaacctATTGATAATTGTAGCGATGATGAGGAAAAACCTTTAATTACCAGGACTTCAAGGCAGAAATGTCTACATTGCATTAAATCATTTGCTACACGTTTAGCTTTACAAAGACATATGATAGTACACAAGCACAAAACAAAATTACGTTATGTTTGTTACATATgtgaaaaacaattttcaaatattgcaAAATTAAAAAGTCACATTTTCAATAGACATGATACacatgaaagtaataaaaaaagagtgaaagagaacaGTGAAGATAAAGATGTACATTTAAAAACAGGACACCTtgatagtaattgtaataattccaTCGAAAATACTAaaactgaaaaaagaaattgtaaatttaCATGCAAAGTTTGTTCTAAACAATTTACATATCAAAAATCTTTCTTCACTCATGCTAAAAGTCATCCAGAATATAATTCTgaagatttaaatgatttttctagTGAAACTGGAACtcaattaaatgaaatcaaaaGTAAATCGGTACTGAAACAAAGTGAGTCAGATgatggaaataatgatgatattgatgatatcgataatgacgatgacaatgacaatgataatgataatgataatttaccAATGGAAAGTCCTCAGTGTACACAGTGTGGAAAATTGTTTGCAACCAAAAGAAATCTTAAAAGGCATATCTCTACTCACAGTGGTTTGAAGTACAATTGTTCGACTTGTGGAAAAGGATTTTCAAGAATAGATAAATTAAAGGATCATGAGCAATCAAAGCATAAAGATGAAATATTTGGTAActcggaagaagaaaatgaagatgatacagataatgaaaataaagttaatagTGGTTCTAATGATCGAAAAAAGGGTAGACATAATAGGCCACATAAATGTGCTATTTGTCCAAAAGCATTTGCTCAGCAACAGTCTTTAGCTAATCACATAGAAAGGCATAAACGTGCTAAAGATAGTCAAAAAAGATTTCTGTGCGAAGTTTGTAGCAAATGTTTTGCTCAAAGTGGTTCACTGGTTGCTCACATGCGTACTCATACTGGCATTAAaccatatgtatgtaatgtcTGCAGTAGAGCTTTCACTAAAAGCACCTATCTACAATTACATTTAAGAACTCATAGTGGAGAAAAGCCTTATATTTGTCAATATTGTAGCAGAGCATTTGCACGTGCCAATACTTTAGCCAGACATATAACGATGCATACAGGAGAAGCTAAATATCACTGCCAGATTTGTACTAAGTCTTTTAGACGATTAACTTCATTAAATGAACACACGTACACGCATACTGGTCAAAGACCATATGCATGTAAAATATGTACAAAAAGATATAACAATGCAGGTTCTTTGTATGCACATACAAAGAAATGTAAAGCTCAGCAGTTGTCTAACTCAACAACAACTTTTACTCTTCCAATGGATAATACATTGCAACAAAATGGTGGACCTACTCCGCAGGTTTTAATCTATTCTCAAAGAAAACTGGTAGAGGATGGTACTGTTGGTCAAGTTACACCATCTCCACAATATATGATTGCTAATGTACATAATCAAAAAGCCTTATCTACAAATATTATGCAACCATTTACAGTTGAGGATCCAAATGTATGTACAGTCAATTCTAAACAGTTTAaaaatccttattattctatatatccAAATGTATAA
Protein Sequence
MELSADGRTIKSFEDIRINLNEDCRICLRRCNEACQLFQNDKGFSQKLMALAAVQVEEEDGLPSVICYQCSQLLDMSYNFQCQIQKADTKLRGILKLKSCTVKDIENVFKVEDNFSDIISNTILHKKVTDNINNDVRTCSNTIDEPSVQLDVQSFSTDQHVFTSEIINDNIEPNDKCNSIIVLENKQKTYKVVENVKLPQSYEKITNKSNSVTCHSPSLITETDCIKEDLSHEKNLSESDDNSIDQSTVSREQIFKTEIKDELHLEALSYNTLAENSSKNNDIQKEGKPIDNCSDDEEKPLITRTSRQKCLHCIKSFATRLALQRHMIVHKHKTKLRYVCYICEKQFSNIAKLKSHIFNRHDTHESNKKRVKENSEDKDVHLKTGHLDSNCNNSIENTKTEKRNCKFTCKVCSKQFTYQKSFFTHAKSHPEYNSEDLNDFSSETGTQLNEIKSKSVLKQSESDDGNNDDIDDIDNDDDNDNDNDNDNLPMESPQCTQCGKLFATKRNLKRHISTHSGLKYNCSTCGKGFSRIDKLKDHEQSKHKDEIFGNSEEENEDDTDNENKVNSGSNDRKKGRHNRPHKCAICPKAFAQQQSLANHIERHKRAKDSQKRFLCEVCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQLSNSTTTFTLPMDNTLQQNGGPTPQVLIYSQRKLVEDGTVGQVTPSPQYMIANVHNQKALSTNIMQPFTVEDPNVCTVNSKQFKNPYYSIYPNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01233810;
90% Identity
iTF_01514978; iTF_01512326; iTF_01513628;
80% Identity
-