Vman005396.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- -
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000002.1:222803-228519[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.07 5 7.3 3.1 1 23 344 366 344 366 0.97 2 18 0.052 3.8 7.7 0.6 2 23 401 422 400 422 0.93 3 18 0.00016 0.012 15.6 2.2 1 23 496 518 496 518 0.97 4 18 0.0013 0.094 12.7 0.5 2 23 522 543 521 543 0.96 5 18 0.013 0.97 9.5 7.3 1 23 627 649 627 649 0.96 6 18 0.00032 0.023 14.7 0.7 1 21 655 675 655 679 0.92 7 18 0.0013 0.093 12.7 3.7 2 23 752 773 751 773 0.95 8 18 0.00024 0.017 15.0 3.9 1 23 830 852 830 852 0.96 9 18 0.00021 0.015 15.2 0.7 1 20 857 876 857 878 0.94 10 18 0.00038 0.027 14.4 0.6 2 23 889 910 889 910 0.97 11 18 2.9e-05 0.0021 17.9 1.7 2 23 949 970 948 970 0.97 12 18 1.9e-05 0.0014 18.5 1.6 1 23 975 997 975 997 0.95 13 18 0.00011 0.0079 16.1 2.9 1 23 1003 1025 1003 1025 0.98 14 18 3.4e-06 0.00025 20.8 0.4 1 23 1041 1063 1041 1063 0.95 15 18 2.8e-07 2e-05 24.3 0.6 1 23 1069 1091 1069 1091 0.99 16 18 3e-05 0.0022 17.9 0.2 1 23 1097 1119 1097 1119 0.97 17 18 0.00011 0.0081 16.1 4.1 1 23 1125 1147 1125 1147 0.96 18 18 0.0072 0.52 10.4 0.3 1 20 1153 1172 1153 1174 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAGTACGTCGGATCCACCGCAAAGTGAACAAGAAATTGTGTCTACCGTGGAGATATGTCGTATATGTCTTCTTGGTAATCTGGTGATGCGAGATCTCTTTCTGGGAAATGAGGTCGCCTCTTTATCGGCTAAAGCGATGAGTTTCGCGAACGTTAAGATGTTACCAGGAGATGGCTTACCTCCTCGCGTTTGTAACGAATGTGCAGATAAACTTGAATCTGCATATGAATTTAAACTTCAAGTCGAACAAGCTGACAATGTATTAAGAGAAAGATTCGATGGtattaaagaagaattattttttaacgaagttGAAGTACATTTGGAGGTAGATAGAAATGAAGCTATCAATGATATTCATTTAGAATCTCATTACCAACATGCTGCTGAAGTATTGACAGAGGGatcagaaaatgaaaaatctctCTTGAAAGAACAATTGGCATTGTTACAAGTTGAAAAATTGGTAGAAAGAGAACAATTAAGAGAAGaagaaaataattcacaaATATTGGAGCAACAAGGTATAATGAACAATTCTCATAATCAAGAAAAATACACTAATCAAATAGATGAAGATGCTTGTACGTTGGTGAATAATGCAGAAAATCAAGAAGTATTAAAATCAGATGGCATTAATGAAAACTGTACAGATGCGATTCCTGCAGAAGAACATGATTATATTATGCAACAGGATTATGTTATGAATGAACAATTTTCTTCTGAAGAATCTAAACCATCTAAAGAGAATATAACGCAATGCAATGAACCGCTTACGGAATCAAATATACTTGAAGATTGTAAAATGGATACAGAACATATGCCGCTTACAAATATTGACACGCTTGTTGAAAAAGACCTGTCTCTGActgaaattagaaaaagtaaaCGGAAATCATCGCGACGAAATTTTACAAGTGACAGAGATTCcgacgaagaaaattatttcgaaaatttaaatcttaGTTCTCGTCTTAAAAGAGCACAAGCCGATAGATCAGAAAAGATTTACTTTATGTGTTATCTTTGCGACaaacaatttctttctaaGAATGTATTGAAAGAACATATGCATTCACATGAGGAAATTAGGCGAGCTTTGTCTCTTAAAAAAGTGCCTGAAAAATCATCAAAAGTATCTAATACTTCTCCAAAAATGCCACCATCTGGGAAAAGGGCTAACAAGTGTCCATATTGTgggaaagaatatttatacataatttcATTCAGCAAACATCTTAAGcaacatgaaaaagaaaaagaaaatgctaAAGAAGATTCCATGCCCCTTGAAATATCATTTCACGAAGACGAACATAGTTTAGGTTTTGATAACCATAATAATTCACAATATTCGGATTACGCATGTAGAAAGACGGCGAAGCAAGAGGAAGCATATAATGAGaacgaggaggagaaagatgaTCACGaaacagaaaaacaaagaaagaaatctcaCTTGGAAACGTTTGAATGTGATAAATGttctgaaaaattttatacgagACGAAGTTTAAGAAAGCACGCACTTTCACACGTTAACTTAAAATGTAATGTCTGCAATGAAAAATTTGACGAGGTTGagcaattaaaaaatcatcgtGCAAAACATGTAGTAGAAGGTATGTTAATGGATCAAGATTTAGAAGAAGATATAGAACACCATATAATTAACAAAGACGATGAAGAACTAGATATTAAAGGCGATAATGAAGACGATTCAGaaattgagaataatattgacgatgttcaagataaagaaaagtggGCAGAAACAAAAGAGTCCAAATGTCCGCACTGTCCGTCAACGTGTTCTCACAAAAAATCTTCGAGGCACATTGAAACACACACGGGTTCAAAATACAGTTGTAAAGTATGTTGTCAACAATTTACAAGAAAAGATCATTTACGAAGGCATACTGAACAGCATGGAAGAATAAAGACATATAAATGTACGCAATGCAATAAAACATTTGGAAACGAATTGACTTTACGTAATCATCTAATAGCAACCAATCATAAGACTTTCGTTCATGGACAAGAATATGATCCTAATAAACGTATAAAACGAGTGGCAGCTAAAGCTGCACAAaagattattgataaaataaaaacggaAGACGGTTTAGAGGATTATGAcgaagatgatgataataatgatataatcgaTATGGACATTCGTCATAATCGTAAgcaagaaaattcttttaagaAAACTAATAATAGGAAGGAATTAGAATGCGCcacttgtaataaaaaatgtaattcgAAACAAACTCTGACAAAGCATATGGAGCAACAtgtaaaagatgaaaaagcaGAGAAAATGGATAGATTGGACAAGTTTAAAAAGCCagcagaaaaaaaggaacaacaaAGGATAGGTGGTGGTATGGAATTAGGAAAGgacgaagacgatgacgatgataattcAGATTTTGAAAGTGGTTTGGATTGGCCGATGGATAATCACGAATGTGCAacatgtaaaaaaagatatagtaCGAAAAAGTCTCTATTGCGACATCAATTACTTCACGAGGAACCAAATTTCGAATGTGATATATGTAATGTCAAGTTTTATCGTAAGGATAAATTAAAAGCTCATTATGATAAATGCTCAGAAAAAAATCCTGATCAAGTTAGGAAGTGCAATATTTGTGGTGATagttttgaaaataatgaaatgctTCGACAACATAGAGCTAAACATGTAACTGAAGGAATATTAACAGAGGAAGATTTAAGAGATATTGAACCACGTcctgaagaaagaaagcaaggagagaaaattgttagaaaaagaaggacagATATAGTAGGCCTTGAATGTACAGAATGTAACAAACATTATACATCTAGGAAAGGTCTATTACGTCATATACAAGTACACGAaggtaagaaatatttatgtgACATATGTCCAAAGAAATTCTATAGAAgagaacatttaaaaattcatgtaGCTAAGCATAATATGATTAAACCGTATAAATGTACAAGATGCACAAAACgatttattaaagaagaaCAGCTTACGAATCACTTATCGAAACACGATAGGCcatttaagaaaaacaaagaaacggatagttcaaaaagatttttatgtgAAATCTGTTCTAAGAGTTTCACTCAATCGACTACTTTAATAGCACATTTAAGAGCACATAATGGTATAAAGCCATATGTTTGTGAAGTATGTTCTAGACCTTTTACAACAAATGCATATCTAAAAATGCATATGAGGACGCATACACAGGAAAGACCATATATATGTCAGTATTGTTCTAGAGCATTTGCCCGAGCTGATACTCTTGCTAATCACTTAACATCGCATACCGGTGAAGCTAAGTATCATTGCAAATATTGCCCAAAAAATTTCCGTCGATTAAAGTCGTTAAAAGAACATGTTTTTATTCATACTGGTCAAAGGCCATATGCATGTCCAACGTGTGATCGTAGatttaataacaatggtaGCCGTTATGCCCATAGTAAACGATGTAAACAAAACTTTTCGCAAAATCAGAATCGCACTCAAACCCTTACTGAAGTTCAAACGCAACAACCACCACAGAGAATACAACAGACTCTTACTCAAGCACAGGTGGTTAAAGCACCAAACATTAAgaccattactattactagaCAAGCTGAGCCAGTAACTACACAACAAATAATGCAACatcaagaaatattaatgCCACTTATTCTACCACTCACTGTAACTCTCGCAGATGTAGGTGATGAAGTGATATTACCCGAGGGTACAAAGATATTTACAACGTCGTAA
- Protein Sequence
- MDAVEISTSDPPQSEQEIVSTVEICRICLLGNLVMRDLFLGNEVASLSAKAMSFANVKMLPGDGLPPRVCNECADKLESAYEFKLQVEQADNVLRERFDGIKEELFFNEVEVHLEVDRNEAINDIHLESHYQHAAEVLTEGSENEKSLLKEQLALLQVEKLVEREQLREEENNSQILEQQGIMNNSHNQEKYTNQIDEDACTLVNNAENQEVLKSDGINENCTDAIPAEEHDYIMQQDYVMNEQFSSEESKPSKENITQCNEPLTESNILEDCKMDTEHMPLTNIDTLVEKDLSLTEIRKSKRKSSRRNFTSDRDSDEENYFENLNLSSRLKRAQADRSEKIYFMCYLCDKQFLSKNVLKEHMHSHEEIRRALSLKKVPEKSSKVSNTSPKMPPSGKRANKCPYCGKEYLYIISFSKHLKQHEKEKENAKEDSMPLEISFHEDEHSLGFDNHNNSQYSDYACRKTAKQEEAYNENEEEKDDHETEKQRKKSHLETFECDKCSEKFYTRRSLRKHALSHVNLKCNVCNEKFDEVEQLKNHRAKHVVEGMLMDQDLEEDIEHHIINKDDEELDIKGDNEDDSEIENNIDDVQDKEKWAETKESKCPHCPSTCSHKKSSRHIETHTGSKYSCKVCCQQFTRKDHLRRHTEQHGRIKTYKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDEDDDNNDIIDMDIRHNRKQENSFKKTNNRKELECATCNKKCNSKQTLTKHMEQHVKDEKAEKMDRLDKFKKPAEKKEQQRIGGGMELGKDEDDDDDNSDFESGLDWPMDNHECATCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLRQHRAKHVTEGILTEEDLRDIEPRPEERKQGEKIVRKRRTDIVGLECTECNKHYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRPFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFSQNQNRTQTLTEVQTQQPPQRIQQTLTQAQVVKAPNIKTITITRQAEPVTTQQIMQHQEILMPLILPLTVTLADVGDEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090138;
- 90% Identity
- iTF_01513621;
- 80% Identity
- -