Basic Information

Insect: Vespa mandarinia
Gene Symbol: -
Assembly: GCA_014083535.1
Location: JACHAV010000089.1:344362-346704[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.9e-06 0.00057 19.7 0.1 1 23 18 40 18 40 0.97

2 18 4.4e-06 0.00032 20.5 0.5 1 23 46 68 46 68 0.97

3 18 0.00016 0.012 15.6 1.0 1 23 74 96 74 96 0.98

4 18 1.4e-07 9.8e-06 25.2 4.3 1 23 102 125 102 125 0.98

5 18 0.001 0.075 13.0 1.2 1 23 166 188 166 188 0.96

6 18 2.6e-07 1.8e-05 24.4 1.2 2 23 195 216 195 216 0.98

7 18 3.3e-06 0.00024 20.9 2.4 1 23 222 244 222 244 0.97

8 18 2.3e-06 0.00016 21.4 1.1 1 23 250 272 250 272 0.98

9 18 0.2 15 5.8 0.7 3 23 302 323 301 323 0.96

10 18 3.5e-05 0.0025 17.7 2.3 1 23 329 352 329 352 0.97

11 18 0.013 0.93 9.6 1.3 2 23 358 379 357 380 0.94

12 18 0.00041 0.03 14.3 0.2 1 23 385 407 385 407 0.98

13 18 0.0044 0.32 11.1 1.1 1 23 413 436 413 436 0.95

14 18 7.1e-05 0.0051 16.7 2.0 1 23 458 481 458 481 0.93

15 18 0.0016 0.11 12.5 0.1 1 23 492 514 492 514 0.95

16 18 0.0033 0.24 11.5 3.6 1 23 520 542 520 542 0.94

17 18 3.7e-07 2.7e-05 23.9 1.1 1 23 548 570 548 570 0.98

18 18 1.6e-05 0.0011 18.7 0.2 1 21 576 596 576 597 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.9e-06	0.00057	19.7	0.1	1	23	18	40	18	40	0.97
2	18	4.4e-06	0.00032	20.5	0.5	1	23	46	68	46	68	0.97
3	18	0.00016	0.012	15.6	1.0	1	23	74	96	74	96	0.98
4	18	1.4e-07	9.8e-06	25.2	4.3	1	23	102	125	102	125	0.98
5	18	0.001	0.075	13.0	1.2	1	23	166	188	166	188	0.96
6	18	2.6e-07	1.8e-05	24.4	1.2	2	23	195	216	195	216	0.98
7	18	3.3e-06	0.00024	20.9	2.4	1	23	222	244	222	244	0.97
8	18	2.3e-06	0.00016	21.4	1.1	1	23	250	272	250	272	0.98
9	18	0.2	15	5.8	0.7	3	23	302	323	301	323	0.96
10	18	3.5e-05	0.0025	17.7	2.3	1	23	329	352	329	352	0.97
11	18	0.013	0.93	9.6	1.3	2	23	358	379	357	380	0.94
12	18	0.00041	0.03	14.3	0.2	1	23	385	407	385	407	0.98
13	18	0.0044	0.32	11.1	1.1	1	23	413	436	413	436	0.95
14	18	7.1e-05	0.0051	16.7	2.0	1	23	458	481	458	481	0.93
15	18	0.0016	0.11	12.5	0.1	1	23	492	514	492	514	0.95
16	18	0.0033	0.24	11.5	3.6	1	23	520	542	520	542	0.94
17	18	3.7e-07	2.7e-05	23.9	1.1	1	23	548	570	548	570	0.98
18	18	1.6e-05	0.0011	18.7	0.2	1	21	576	596	576	597	0.96

Sequence Information

Coding Sequence: ATGATGAAATTAGTTGAACACTTGAAGAATCTGCATGGTATTGAAAGAGCATTCAATTGCGACGAATGTGGAAAAGCCTTTCGTAGTCCAATGAATATAGCACGTCACAAATTGATCCACACCGGTCAAAAGAAATTTGCTTGCGATCTTTGTGATTACGTTTCTaatcaaaaatcaaatttgGAATCTCATCTTCGAAGACATAGAAAGGATTACGTTTATAAGTGCGAAAAGTGTCAGAAAGGATTCTTTGATAGGGCAGACTATGAGGAACATTTTAACGTACACatcaaagataaattttatcaatgtgaatattgtaaaaaaatgtattcatataagaaaaatctaaCTAGGCATTTGAGAACTCAACATACGAATTTGTCCTGTAACACGAATGTTTCAACTACAGCTACGAACAAACTCATTGGCAGAATCAACTTGACCGATCAAAAGTTATTGAAAGATAAAACTTCTAAGTTGATCAAAACGAAATATCTTTGTGATTTGTGCGGTAAAGCATTATCTTCGCATAAGAGACTATCTATTCATAGGCGTGTACATACTGGTGAAAAAATAGCCACTTGTGAAATATGTTCTAAGAAATTTAgtagtaaagaaaatttaaaaattcatttgcgAATTCATACTGGAGAGAAACCGCACGTTTGTTCCGAATGCGGCAGACGTTTTACGCAAAGGACATCTTTGGTTATGCATCTTCGTTATCATTCGGGAGAAAGACCATTTAAATGTCCTGATTGTGATAAGAGTTTCATTTCCGGTACGTTCCTTAAGAATCATCGTAAGGTACATGACAAGATTTCCGCCGATAGTAACAAAACCCTTGCAAGAGACAACAGCCATTTAGAATTGAACTCATACGAGACGAACGAGAAAGCCTGCGAATTCTGCGAACAAAAATTCCACTTCGTAACAAGACTGGTGGCTCATCTAAGGATCGTTCATGGGATTCATCGACCATTCAAATGTATGATCTGTGGGAAAAACTATCCCCAGCAATTCATGTTAAATGCTCATGTAAAAAAATGTCACACGCCGAAAACCGTACCATGTACGCAATGTACTTTTATGGGGGTTGATACGAGCGACTTGGAGAGACACAAAAAGCGTCATCATCGAGAAGAAAAGTTTACCTGTGAGATATGTAGCGAAATATTTACCGAAAAAGTTGCTTTCACCTCTCATACGGCTATGCACAATTTTATGGAGTATCATCAGTGTAACGCATGCGGTGGAACATTTAACGACGTTTACAgCTTGAAAGAACACAATCGTTTATACCATTATGATCCCAACAGTGTGATAGCGGATGATAATCTTCTGCAATCGGATCGTCAAAGTTCAGAACACAAAtgtgaaatttgtggaaaaatttacaaatacaaATCCGTGTTGAAACAGCACAAAGTGAAGGCTCACGGTGATTCGTCGAATTACGAGAGACGTCGTTATCTTTGCGCTCTTTGTGGCAAGGAATTAAAAACAGCAAAAGGTCTCGAAATTCATAATAGATCCCACACAGGTGAGAAACCATACACTTGTGAAATTTGCGGCAAGTGTTTCGCTTGTGAAACTCTTTTAAGGACTCACAATGTCACACATacgggagaaagaaaatattcatgcGATCAATGCGGTAAAGCATTTACACAAAGATCCACACTTGTCGTTCATAAAAGATATCATACGGGTGAAAGGCCCTATGTATGTTCTCAGTGTGGTAAGGGTTTCGTTACTAGAACGGTTTTGAATACTCACATGAAATCGTgtcgataa
Protein Sequence: MMKLVEHLKNLHGIERAFNCDECGKAFRSPMNIARHKLIHTGQKKFACDLCDYVSNQKSNLESHLRRHRKDYVYKCEKCQKGFFDRADYEEHFNVHIKDKFYQCEYCKKMYSYKKNLTRHLRTQHTNLSCNTNVSTTATNKLIGRINLTDQKLLKDKTSKLIKTKYLCDLCGKALSSHKRLSIHRRVHTGEKIATCEICSKKFSSKENLKIHLRIHTGEKPHVCSECGRRFTQRTSLVMHLRYHSGERPFKCPDCDKSFISGTFLKNHRKVHDKISADSNKTLARDNSHLELNSYETNEKACEFCEQKFHFVTRLVAHLRIVHGIHRPFKCMICGKNYPQQFMLNAHVKKCHTPKTVPCTQCTFMGVDTSDLERHKKRHHREEKFTCEICSEIFTEKVAFTSHTAMHNFMEYHQCNACGGTFNDVYSLKEHNRLYHYDPNSVIADDNLLQSDRQSSEHKCEICGKIYKYKSVLKQHKVKAHGDSSNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEICGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCSQCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01512951;
90% Identity: iTF_01512951;
80% Identity: iTF_01512951;