Basic Information

Insect: Vespa crabro
Gene Symbol: chn
Assembly: GCA_025728115.1
Location: JAITYU010022623.1:7572-10079[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.3e-05 0.00095 19.2 1.4 1 23 366 388 366 388 0.98

2 7 9.8e-07 7e-05 22.8 1.1 1 23 394 417 394 417 0.95

3 7 1.2e-05 0.00087 19.3 0.6 1 23 423 445 423 445 0.98

4 7 1.7e-05 0.0012 18.9 0.9 1 23 451 473 451 473 0.96

5 7 5.7e-05 0.0041 17.2 3.1 1 23 479 501 479 501 0.97

6 7 2.2e-05 0.0015 18.5 0.5 3 23 509 529 507 529 0.97

7 7 3.8e-06 0.00027 20.9 1.1 1 23 535 558 535 558 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.3e-05	0.00095	19.2	1.4	1	23	366	388	366	388	0.98
2	7	9.8e-07	7e-05	22.8	1.1	1	23	394	417	394	417	0.95
3	7	1.2e-05	0.00087	19.3	0.6	1	23	423	445	423	445	0.98
4	7	1.7e-05	0.0012	18.9	0.9	1	23	451	473	451	473	0.96
5	7	5.7e-05	0.0041	17.2	3.1	1	23	479	501	479	501	0.97
6	7	2.2e-05	0.0015	18.5	0.5	3	23	509	529	507	529	0.97
7	7	3.8e-06	0.00027	20.9	1.1	1	23	535	558	535	558	0.97

Sequence Information

Coding Sequence: ATGGAGACTGGGAGTTCAGTTATATTAGATACTTGTGGAGATGATTCGGTCTTGCTTCAAACAGTAAAAAATATAGTTAATCAAAATCAACATAATGATTTGGAGCCAGAAGAGGAAGAATTTTTTTTAGTAACAGATGTTGAAAATGAACATCATAGAAATATAGATGTTACAAATGATAATTCAGTATGTAATCTAAATGAATCCTTAGAAAAGATATCATGGACAGGATTATGTAGAATTTGTGCTAATGTAAATGACCATTTAATTCCAATatttgaaggagaaggcatggaacatgcactatgtaacaagatacataaatatttaccaatacatatttctgagaatgacacattaccTTTGCAATTATGTTACCATTGTGCAGCTACATTATTAGCATGGCATGAATTAGCTGAAGGATGTTTAAGTGCAGAACGCCGATTGCTTGAGATACAAACCTCATCTCAAAACAAACAGTCAACAGATGAATCAGTAACTCTGCCAGAAACTACTGTATCTCATGTTACAGAAAAAGTTTTTACCAGTCAAGAAAGTGAAAAGCTTGACTTTGCTCATATTGAAAAAAAAAAACTCTTCATGTGCCATGATTATGGGGTTGAAAAATGCCCACCTTCTGCATTCTTCAAATATAGCTACAAATCTGGAGTCAAGCCTCGACTATTTTCCAGGTCCAGTAGCAACCGGACACCATTTAAAATGTTCCTTGAAATGCACAATATATTTTGGAAGCCATATAAAAAAAGATGCCAGCTACAGCAAAAGAAATCTAATATGGGTGGAGATTGTGGTTCTATTTGGATTGCTGTAATGGATACAACGCTTGAACATCCTTCTATAGCTGATCTACAGCAAAATAATGATACAGATGTTAAAGGAGAAATGTGTGAAGAATACAAACAAAATAATGCCAAAATTCTAGATCGAGAACAAAATACATGTATGGTAGCATTTCTTCCAAATGTAAATAATGAATCACAGAAAACAAAGATATGTAAAACTTCCTTAAATGATACTAAAGACACTAATGAGCAAATAAAGAAACAAAAAAATTTTTCTGATACACAAGAATCATATCAATGTATTGAATGTGGAAAGTTTTTTAAATTAAAAGATTCATATTTAAGGCACATGAGGATACATAAAGATGAAAGACCATTTACTTGTCATGTATGTGGAAAACAATTTCGTGATTCTGGTGGGCTTTCGAGACACTTAAAAGATGTACATGCAAAGCTTAAAAATTTTATGTGCGATATTTGTGGCAAATCATTTGCATCAAAAGCTACAAGAGATGATCATCGTCGTACACATACAGGAGAAAGACCTTACATTTGTGACTCCTGTGGTAAAACATTTAAGTCAAAAGCTTCACTTTATATTCATAGTAAATTACATACAAATGAATTTCCACATCCATGCACTTATTGCAATAAAAAATTTCGTAGACGTCAAGAAATGTTAGCTCATGTAACAACACACACAGGAGAGAAGAATTATGGATGTGATATATGCTCAAAAAGATTTAGAGTGAAATCAGAACTAGTTAGGCATAAGCTTGTTCACTCTGAAACTAAGCCATTTGTTTGCGTTAAATGTGGGTTGGCTTTTCGTCAAAAACGTTATTTAAATAATCACATTAAAAGCAGACATGTCGACTTACTACAAATGGGCTAA
Protein Sequence: METGSSVILDTCGDDSVLLQTVKNIVNQNQHNDLEPEEEEFFLVTDVENEHHRNIDVTNDNSVCNLNESLEKISWTGLCRICANVNDHLIPIFEGEGMEHALCNKIHKYLPIHISENDTLPLQLCYHCAATLLAWHELAEGCLSAERRLLEIQTSSQNKQSTDESVTLPETTVSHVTEKVFTSQESEKLDFAHIEKKKLFMCHDYGVEKCPPSAFFKYSYKSGVKPRLFSRSSSNRTPFKMFLEMHNIFWKPYKKRCQLQQKKSNMGGDCGSIWIAVMDTTLEHPSIADLQQNNDTDVKGEMCEEYKQNNAKILDREQNTCMVAFLPNVNNESQKTKICKTSLNDTKDTNEQIKKQKNFSDTQESYQCIECGKFFKLKDSYLRHMRIHKDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKNFMCDICGKSFASKATRDDHRRTHTGERPYICDSCGKTFKSKASLYIHSKLHTNEFPHPCTYCNKKFRRRQEMLAHVTTHTGEKNYGCDICSKRFRVKSELVRHKLVHSETKPFVCVKCGLAFRQKRYLNNHIKSRHVDLLQMG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01515003;
90% Identity: -
80% Identity: -