Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.87 1.8e+03 -1.3 0.4 17 28 18 29 6 40 0.76

2 7 0.0053 11 5.8 2.0 14 41 43 67 31 70 0.83

3 7 0.37 7.6e+02 -0.1 2.3 12 24 69 81 66 86 0.85

4 7 1.8e-09 3.7e-06 26.6 4.4 7 43 93 125 83 126 0.87

5 7 0.0015 3.1 7.6 0.6 12 30 161 181 156 189 0.76

6 7 1.7e-05 0.036 13.8 2.2 12 40 189 214 184 222 0.88

7 7 0.37 7.6e+02 -0.1 0.6 18 39 223 241 215 244 0.70

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.87	1.8e+03	-1.3	0.4	17	28	18	29	6	40	0.76
2	7	0.0053	11	5.8	2.0	14	41	43	67	31	70	0.83
3	7	0.37	7.6e+02	-0.1	2.3	12	24	69	81	66	86	0.85
4	7	1.8e-09	3.7e-06	26.6	4.4	7	43	93	125	83	126	0.87
5	7	0.0015	3.1	7.6	0.6	12	30	161	181	156	189	0.76
6	7	1.7e-05	0.036	13.8	2.2	12	40	189	214	184	222	0.88
7	7	0.37	7.6e+02	-0.1	0.6	18	39	223	241	215	244	0.70

Coding Sequence: ATGATGAAATTAGTTGAACACTTGAAGAATCTGCATGGTATTGAAAGAGCATTCAATTGCGACGAATGTGGAAAAGCCTTTCGTAGTCCAATGAATATAACACGTCACAAATTGATCCACACCGGTCAAAAGAAATTTGCTTGCGATCTTTGTAATTACGTTTCTAATCAAAAATCAAATTTGGAATCTCATCTTCGAAGACATAGAAAGGATTACGTTTATAAGTGCGAAAAGTGTCAGAAAGGATTTTTTGATAGGGCAGACTATGAGGAACATTTTAACGTACACGTCAAAGATAAATTTTATCAATGTGAATATTGTAAAAAAATGTATTCGTATAAGAAAAATCTGACTAGGCATTTGAGAACTCAACATACGAATTTGTCCTGTAACACGAATGTTTCAACTACAGCTACGAACAAACTCATTGGCAGAGTCAACTTGACCGATCAAAAGTTATTGAAAGATAAAACTTCTAAGTTGATCACAACAAAATATCTTTGTGATTTGTGCGGTAAAGCATTATCCTCGCATAAGAGACTATCTATTCATAGGCGTGTACATACTGGTGAAAAAATAGCCACTTGTGAAATATGTTCTAAGAAATTTAGTAGTAAAGAAAATTTAAAAATTCATTTGCGAATTCATACTGGAGAGAAACCGCACGTTTGTTCCGAATGCGGTAGACGTTTTACGCAAAGGACATCTTTGGTTATGCATCTTCGTTATCATTCGGGAGAAAGACCATTTAAATGTCCTGATTGTGATAAGAGTTTCATTTCCGGTACGTTTCTTAAGAATCATCGTAAGGTACATGACAAGATTTCCGCCGATAGTAAAAAAATCCTTGCAAGAGACAACAGCCATTTAGAATTGAACTCGTCAATTTCTAAAAAGAATATAATATCATCTAAATAG
Protein Sequence: MMKLVEHLKNLHGIERAFNCDECGKAFRSPMNITRHKLIHTGQKKFACDLCNYVSNQKSNLESHLRRHRKDYVYKCEKCQKGFFDRADYEEHFNVHVKDKFYQCEYCKKMYSYKKNLTRHLRTQHTNLSCNTNVSTTATNKLIGRVNLTDQKLLKDKTSKLITTKYLCDLCGKALSSHKRLSIHRRVHTGEKIATCEICSKKFSSKENLKIHLRIHTGEKPHVCSECGRRFTQRTSLVMHLRYHSGERPFKCPDCDKSFISGTFLKNHRKVHDKISADSKKILARDNSHLELNSSISKKNIISSK

Sequence clustering based on sequence similarity using MMseqs2