Vcra001986.1
Basic Information
- Insect
- Vespa crabro
- Gene Symbol
- lov_1
- Assembly
- GCA_025728115.1
- Location
- JAITYU010008945.1:11932-14143[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-18 2.6e-15 55.5 0.0 1 44 456 499 456 500 0.96
Sequence Information
- Coding Sequence
- ATGTATCGCGGGGAAGTGCGAGTCGGTCGAGAAGAATTGGCAGGACTGATGAGAGCGGCCGAGAGTCTGCAGGTCCGGGGACTGGCTTCGTCGGAACCGAGGCCGGCATCACCGCCGGACACACCAGTGGCCGATCTTCTTCTCGGCGAGCCATCCACGCCCGAGGAAACTAGGCAGGATACTCAGGAGgacgacgataatgcgtcggagatcgcagcagcagcagccgcggcagcggccgcgacagcggcggcggctgcggcggcggcagcacgggcatcgatcagagaaacgatcacgacgcctataagaacgatcttcCATTCTTCGAGGGACCATCGCGATAGATTACCGCACATGGCTCATCTGAGCTTTGGCATACGGGAGCTAAGGGAAGCCTGCAGTTCCCCTCTTATGCCGCGTCGGAAACAGGCAAGACCACGCCGAAGATCCGGGGAATTGGTACCGCAAGACTTGAGCAGGCCGCATCCACCGCCGAGTCTGAGCCCACCGTTTTCCTCTTTGAATCTGACCAATAATCAGCAACAGAGTCAACACCATCCACAGGCATCGTCGAATGCTACGAATCAGCTGCAGCAGCACCAGCACCAGCAGCAACAACAACAACAGGAGGAAATGGCTGAGAATTTGTCGATAAAGAGAACAGTCTCGCCGATAGCCCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACATCACAGCCAGCAGCTGCATCAAGTGAAGACAGAAAGTAGCGAGGCAGCGAGTAGTCCGCGAGGGTCTCCCCTTACCGGTACGAGTCTTCTCCATCTCGATGGTTCACCCCAAGACATCCCATCGGCGGCAGCCGCTGCCGTTTGGCTTCCTCAGAATCACCCGCAAAGTCAGCTGCCACCGCCGCCAACGCAAACTCATCATTCGCGGGACGACAGTCCTCTTGGTTCCGCTAGAAACACGCACGCCTATCAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAACAAGAATCATCGCTGACGTCTAGACGTGGCTCGATCGCGGCGATGTTTCCCCTCGACAGCGTTGCGTCTTTGAGCGGTGGACTCTTTCCTCACGGTACCGCCATCGATAGGGGATCCCTCTTAGCGGATCTCCACGAAAGTTTTAAACCGGAACAGTTACACGGATTGTTCGGACCGGCCACCTTGACGACTCATCCTTCCGGTAAGAAGAAAAAGCATAGAACCGACGGCGACGCACCGAGAAGATGGTCGGATCAAGGAGGACGTGGTCTGCCGGTTGGAAGACCAAAGGGTCAACACAGCGCACCCCGGGGCGGCCCACCGAGATCTTGGACTAATGCCGAACTTACCGAAGCGCTACAACACGTTTGGAACAAGAAGATGACGACGTCTCAGGCAAGCCGAATATTCGGCATACCATACAACAGTTTGTTGATGTACGTGCGCGGTAAATACGGAAAGAGCTTGAAGTTGGAGCAATTGAGAAGAGATTGCACCGGCGCTACGACCGGCGACGTAGTCATGAATTCTTTAAACAACAATGTCAAAGCCGTTCAACAACCACCGGCGCAGCTGAGCCATCCTCTCGCCGGTCTTCCACCCCATCCGGCCGACGACAGTGGCTTTCCTCATCACTCGCTCCTCGGTACGAACCTTTCTCAAAGTTTTTTCCCGGATTTTACCACCTCTCCGTTCCCCGTGCCAGTTAATATGATACATCTTCTAACCCCGAGCGAACAAAAAGCTTTCGAGCCTCCTCCGAATCCCGGTGGTGGTAACAGCAATGCCAGCGGAAGCAACAGCGGTGGTACCGGTACCACTGGAAATGGTACCACCGCGGGAAGTTCTggtaccgcagcagcggctgccgcagccgccgccgccgctgctgccgccgctgcagctgctgccgttgccacggcttcgaacgctccggaacacggctcgtctcatagtagtcggacgccctcgccggtagaccatcatcaccatcgtcaccgtcatcatcaccatcatcattatcatcacgagtcgctgcaaccgcagccttcgcagtcggcaccggcgttgcttcaacaaaatggctcggattag
- Protein Sequence
- MYRGEVRVGREELAGLMRAAESLQVRGLASSEPRPASPPDTPVADLLLGEPSTPEETRQDTQEDDDNASEIAAAAAAAAAATAAAAAAAAARASIRETITTPIRTIFHSSRDHRDRLPHMAHLSFGIRELREACSSPLMPRRKQARPRRRSGELVPQDLSRPHPPPSLSPPFSSLNLTNNQQQSQHHPQASSNATNQLQQHQHQQQQQQQEEMAENLSIKRTVSPIAQEQQQQQQQQQQQQQQQQQQHHSQQLHQVKTESSEAASSPRGSPLTGTSLLHLDGSPQDIPSAAAAAVWLPQNHPQSQLPPPPTQTHHSRDDSPLGSARNTHAYQQQQQQQQQQQQQQESSLTSRRGSIAAMFPLDSVASLSGGLFPHGTAIDRGSLLADLHESFKPEQLHGLFGPATLTTHPSGKKKKHRTDGDAPRRWSDQGGRGLPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGATTGDVVMNSLNNNVKAVQQPPAQLSHPLAGLPPHPADDSGFPHHSLLGTNLSQSFFPDFTTSPFPVPVNMIHLLTPSEQKAFEPPPNPGGGNSNASGSNSGGTGTTGNGTTAGSSGTAAAAAAAAAAAAAAAAAAAVATASNAPEHGSSHSSRTPSPVDHHHHRHRHHHHHHYHHESLQPQPSQSAPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513391; iTF_01513579; iTF_01512925; iTF_01512754;
- 90% Identity
- iTF_01512925;
- 80% Identity
- -