Vnig017417.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
nfxl1
Assembly
GCA_034508555.1
Location
JAVRKA010000071.1:202556-211364[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2 2.7e+04 -5.0 1.9 15 19 161 165 161 165 0.85
2 20 1.2 1.7e+04 -3.4 0.9 4 10 196 202 196 202 0.84
3 20 3e-08 0.0004 20.9 17.0 1 19 210 227 210 227 0.99
4 20 2.8e-08 0.00037 21.0 13.8 1 19 262 280 262 280 0.99
5 20 0.45 6e+03 -2.0 1.4 5 10 304 309 304 309 0.94
6 20 1.6e-09 2.1e-05 25.0 16.9 1 19 315 333 315 333 0.99
7 20 6.9e-06 0.092 13.3 12.6 1 19 368 386 368 386 0.98
8 20 0.36 4.8e+03 -1.7 0.6 1 5 395 399 395 404 0.89
9 20 1.7e-05 0.23 12.1 14.4 3 18 422 437 420 438 0.92
10 20 2.8e-09 3.8e-05 24.2 13.5 1 19 447 465 447 465 0.99
11 20 0.7 9.4e+03 -2.7 0.8 5 10 493 498 493 498 0.93
12 20 0.0015 21 5.8 6.8 10 18 514 522 512 523 0.93
13 20 0.17 2.2e+03 -0.7 4.2 4 12 535 543 533 543 0.87
14 20 2 2.7e+04 -5.7 5.2 15 19 567 571 566 573 0.62
15 20 1.3 1.7e+04 -3.5 1.0 6 10 600 604 599 604 0.83
16 20 2.7e-05 0.36 11.5 6.4 1 11 610 620 610 621 0.96
17 20 9.3e-06 0.12 12.9 17.8 3 19 651 667 650 667 0.92
18 20 2.7e-06 0.037 14.6 10.8 1 16 710 724 710 725 0.97
19 20 0.16 2.1e+03 -0.6 0.4 7 12 726 731 726 731 0.86
20 20 0.95 1.3e+04 -3.1 0.9 6 10 760 764 759 764 0.89

Sequence Information

Coding Sequence
ATGAGTGACAGAAATCCAAAATCAGTATGGAACCGGGGTGGCAATCGCAATGTAAACAGGACAAGCCCTCAAAACTCCTCACAATTTTCAGCCGAGAAAAAGTTTCGTGAAGCTCAAATACAGTTACAAGCTTCAGTTCAAAAACATATTAAGGAATTCGACTATTCGTCTGAAGAAGAAGATTTGGAGTCTAATAATATTTTAGatACTGTACTAAGAAATTATTCGCAAACGACTGGTCAAAAAGCAGATTTGGGGCGAACTCagcaatttattgaaaatatatttttgtcggGTGCCGCGACATGTCTTATTTGTATTGCATCCGTAAAAAGATCTGAAGCTATTTGGAGCTGCTTGCAGTGCTACTGTTTTTTCCATTTGCAATGCATTCAGCGCTGGGCAAAAGACAGTATTGTCCATCAAAAATTAGCACACGAAGACTTGCCTCGTAATGCTTCACCGGTTTTTAAGTGGGGATGCCCAAAATGTCGATATGAATATGATCCTGAGAACATTCCGAAAAAATATGACTGCTTTTGTGGAAAAACAACCGATCCGCCATTCCATCCATGGCAAATTCCTCATTCCTGTGGCGAGAACTGTGAAAAACCCTTATCGCCTGATTGCGGACATAAATGCCTGCTTTTATGTCATCcagGACCGTGTCCACCTTGTCCAAAGACTGTCCGATCAGAATGTTTTTGTAAAGCGGACGCACGTTTACAAAGATGTAGTACTAAAGATTGGTCGTGCGGCAAAAAATGTAATCGCTTATTAGCATGTGGACGTCATACTTGTGTCCAAAAATGTCACAGTGGGGAGTGTGCAAAGTGCCCCAAACAAAGTCAGCAGAAATGTGATTGCGGAGACAAAACTCAGATGAGAGAATGTGCTTCTCCACATTGGAAATGCGAAAAGatttgtaataaatttgtaTCATGCGGAAACCATAAATGTGAAGAAAAGTGTCATTCGGGTCCTTGTGGAGATTGTCCAAATGCGAAAACTCGCTTTTGTCCTTGTGGCAAGACGACTTACCAGTTGCCTTGTACTGAGGAAGTGCCTACTTGCGGCGATACTTGTACTAAAATGCTCGATTGTGGGGTTCATAAATGTTCTGAACGCTGTCACAGAAGCAAGTGTGGCACTtgtcggGAAGTTGTTACAAAATCGTGCCGCTGCGGTTTACATACAAAGGAAGTGCAGTGTTCAAAGGAATATTTGTGTGATGTTAAATGCAAAAGTATTAAGGATTGCTTCAAACATCCGTGTAATCGTAAGTGTTGTGACGGAAACTGTCCACCTTGTGATAAATTATGCGATAAGACTTTACGCTGCGGTGCCCACAAATGTAGTTCGGCATGCCATAGAGGTCCGTGTTATCCATGTCCACGAACTGCGACCGTGAAATGTCGTTGTGGACAGACTTCAATCACTGTACCGTGTggtaaacaaaagaaaacccACCCTCCACGGTGCAGTAAACTATGCAGGACACCTCCCAATTGTCATCATCCGAAAAGAGAAGCGCATAATTGCCATTTTGGCAGCTGTCCTCCGTGCAACCAGGTCTGTAATAAATCACGAACTTCTTGTGATCATCTGTGCCCAATGCCGTGTCATTCTGCAGTAAAAGTCGAAGACAAACCATCGGTGCCTTTTGAGCAGCATAATGCTTCGCAACGTGAATTCAAATGTCTTCCGTGTCCGAAGTGTGTTGTGCCGGTGCCTGTTACTTGTTTGGGTGGACACGAGACTGCAGATTGGCCTTGTCACTTATCGCAACCTTCGTCGTGTCAACGAAGCTGCGGTCGCCTGTTGCAATGTGGCAATCACAGCTGCAATCGATCGTGTCATGTCATTGAAAATGCGCCGGATGAAATTATGgCGGGAACTACTTGTGAGTCATGCGAAACTGGTTGTTTGAAGCCGAGACCTGGAGGCTGTACACATAGTTGTCCAAAACCGTGTCATCCAGGCCTGTGCCCGCCGTGCAAACACATAATGCGTATCAAATGCCATTGTGGTTTGAATCAACTGTACGTACCATGCGGAGAATGGACCGTGATGGAAAATCAAGATCGTATTAAGTCTTGCGGAAATCAGTGCCCCaaaaatTATCCGTGTGGTCATCGATGCAAAAGTAATTGCCATTCGGGTTCGTGCCCGGAAGAGGAACTGTGTCACAAAAAAGTTAAAGTTTATTGCTCGTGTCGAAGATTAAAGAAAGATTTCCATTGTGAAATGGTACGAAATGGTGACGCGATTGTAGAATGTGATGAGGTGTGTTTGCAAAAAAAGGAGGAGCTTAAGAAAACACGAGAATTAGAACTTCAACAAAAGAAACTTGAAGAGGAACAGAAAAACCAAAGAGAAATAGAGGAATTTGAAAAGAAATTTCATTCTAAAAAGAAATACAAGAAAAAGCGAGAATATTATGAAAATGAAGAAGTTTCTTTATTCAAAAAGTACTGGTATATAATTCCTATTATAACAATTGtcttatttgctatttttatcGTATTGAAAGAGTGA
Protein Sequence
MSDRNPKSVWNRGGNRNVNRTSPQNSSQFSAEKKFREAQIQLQASVQKHIKEFDYSSEEEDLESNNILDTVLRNYSQTTGQKADLGRTQQFIENIFLSGAATCLICIASVKRSEAIWSCLQCYCFFHLQCIQRWAKDSIVHQKLAHEDLPRNASPVFKWGCPKCRYEYDPENIPKKYDCFCGKTTDPPFHPWQIPHSCGENCEKPLSPDCGHKCLLLCHPGPCPPCPKTVRSECFCKADARLQRCSTKDWSCGKKCNRLLACGRHTCVQKCHSGECAKCPKQSQQKCDCGDKTQMRECASPHWKCEKICNKFVSCGNHKCEEKCHSGPCGDCPNAKTRFCPCGKTTYQLPCTEEVPTCGDTCTKMLDCGVHKCSERCHRSKCGTCREVVTKSCRCGLHTKEVQCSKEYLCDVKCKSIKDCFKHPCNRKCCDGNCPPCDKLCDKTLRCGAHKCSSACHRGPCYPCPRTATVKCRCGQTSITVPCGKQKKTHPPRCSKLCRTPPNCHHPKREAHNCHFGSCPPCNQVCNKSRTSCDHLCPMPCHSAVKVEDKPSVPFEQHNASQREFKCLPCPKCVVPVPVTCLGGHETADWPCHLSQPSSCQRSCGRLLQCGNHSCNRSCHVIENAPDEIMAGTTCESCETGCLKPRPGGCTHSCPKPCHPGLCPPCKHIMRIKCHCGLNQLYVPCGEWTVMENQDRIKSCGNQCPKNYPCGHRCKSNCHSGSCPEEELCHKKVKVYCSCRRLKKDFHCEMVRNGDAIVECDEVCLQKKEELKKTRELELQQKKLEEEQKNQREIEEFEKKFHSKKKYKKKREYYENEEVSLFKKYWYIIPIITIVLFAIFIVLKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01531645;
90% Identity
iTF_01531645;
80% Identity
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