Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000094.1:83486-92442[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.12 3.2 8.9 3.8 1 23 1266 1289 1266 1289 0.98

2 11 0.0017 0.048 14.7 0.2 1 23 1294 1317 1294 1317 0.94

3 11 0.075 2.1 9.5 0.2 1 23 1337 1359 1337 1359 0.94

4 11 0.0036 0.099 13.7 0.7 1 23 1369 1391 1369 1391 0.96

5 11 1.9 52 5.1 1.9 1 21 1397 1417 1397 1418 0.91

6 11 1.4 39 5.5 0.1 3 23 1431 1452 1429 1452 0.94

7 11 0.034 0.94 10.6 1.0 1 23 1458 1481 1458 1481 0.91

8 11 0.014 0.39 11.8 1.5 1 23 1488 1510 1488 1510 0.95

9 11 7.7e-06 0.00021 22.1 0.2 2 23 1592 1613 1591 1613 0.97

10 11 0.0028 0.076 14.1 0.7 1 23 1643 1665 1643 1665 0.96

11 11 0.43 12 7.1 0.3 1 21 1671 1691 1671 1692 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.12	3.2	8.9	3.8	1	23	1266	1289	1266	1289	0.98
2	11	0.0017	0.048	14.7	0.2	1	23	1294	1317	1294	1317	0.94
3	11	0.075	2.1	9.5	0.2	1	23	1337	1359	1337	1359	0.94
4	11	0.0036	0.099	13.7	0.7	1	23	1369	1391	1369	1391	0.96
5	11	1.9	52	5.1	1.9	1	21	1397	1417	1397	1418	0.91
6	11	1.4	39	5.5	0.1	3	23	1431	1452	1429	1452	0.94
7	11	0.034	0.94	10.6	1.0	1	23	1458	1481	1458	1481	0.91
8	11	0.014	0.39	11.8	1.5	1	23	1488	1510	1488	1510	0.95
9	11	7.7e-06	0.00021	22.1	0.2	2	23	1592	1613	1591	1613	0.97
10	11	0.0028	0.076	14.1	0.7	1	23	1643	1665	1643	1665	0.96
11	11	0.43	12	7.1	0.3	1	21	1671	1691	1671	1692	0.93

Sequence Information

Coding Sequence: ATGTCTGCAAATGCAAAAAAACCTAATCGaatcgACAAGAATGTTCCCACATTGCCAATAAGGTTTCGCAGACAGTCTGCGAGCGTTATTCCGGTCGACGTTAAAATTAATCTGGTCGATTGTGTTAAATTTCCATTGTTCATAAATGTGAAAGACGTCAAAAAACGCATAAAGGTTGCGCGTAATATCGGTGAAAGTAAAGATTGTGAGTTTGTTAAAAACAGTCATCGATCGATTAACAAGTGCAAAACAGCCAGGCGACCTTGCAAAAGTATTATAGTCGAAAGACACGATTACGAGAAAGCCGCAAATTCCGGCGCCGCACCTAAAAGTGAGAGAACGAAACAAGTGTTGAAATCGATTTTTCAAGGCGCGTCCGATCCGTGCAGAACGACAGAAAAACACGCGGGCAGAAATCTTCCTTTGGCCGGAGCCCCTCGTGCGGTCGTCCCGAACGCCTTGCCCGAGCCCGGATTAAATACAAGCGACTCGGACGGACGGGCAAACCGGCGCGGGCCGAGCGAGCACGACTCGAGCGCTCGAGTCGCGAGCGACGAAAAGCCCGACGATGAATATATATTGCCGCCGATCGTGCCTCGAGTCATCCTTCAGCGCGAGTGCATCGAACTGAAGACGCATCATATAACGAAGCACGACGTCGCCGAACTCGCCGATGGCGAATTGTACATCGGATCGAAGAACGAATTCCTGACTGATTCGAACAAACGACTGTTTGTCGCAGAGTTTTATGCGAAAAAATCCATATCGTTGACTGCGTTACGAAATAAAGCAAAAATGGTGGTCGAACGCGAGAAGATGCGCAAAGAAACCGCGCAAAGGAACGACCGAGCCGACGAGAACGCTCCGTCGTCGGCCGATAGTGCTTTGCCATCCGCCGATAGTGCTCCGCCGTCCGCCGATAATGTTGAATCCGTCGAACAGAACGACGCGGCGGCCGAGGATAACGGCGCAGGGCCCTCGGTCGAACTCGCCGAACAACCCGAGACGGCGAAACGCACCGAAGAGGCCAAATCGGAGGAAGGCGTGCAGCCCGGTCCCGAAAACATCGACGAACAGACGAGTAATTCGTCCGATAACATTATTAAACAGTTGActagcatttttgaaaatgttgaagATTATAACGAGAGCACAGATTCCGTCGGATTGTCGAAGGGCGTCGAAGAAAGTAACGAAAATTTGAAGCCTTTGATCGACAAAGGTCCGGACGAGGACGAAAATCAAGACGGAGCGACCGCTTTGAAGGAAGATTCGCTGAAGTCACAAACGTTAAAGGAAAGTACGACGGATTCGAGTGCAGCCGTCGAATTGGCTGAACGATccgaaaaagacaaagaaatAAACAGATCTGACGAAAAGACGCagcaaaataaagaaaataaagaaaaacacaaATCGATAGAAAATGAACACAAAGCTGATTCCCAAACAGTCGACAAAGAAAGTTTTCAACCTGTAGAGAAGAGCAGCTCTAGTAAAAACGGTGAAAGTGAACATCTAAAAGACGAAGAGAGACGCGAAAAAAGTGTCATCGATGCCAAAGCAGAACTGAAAAAAGGCGAcgcaaaaaaagaattaaaagtcGATCAGCAGAAGAATAAACTACAAAAAGAGAATCTGAAAACGGGAAGTAAAGTCGGCGAAAAAGACAGCGGCGGTAAAATCGCTAAATACGAGGGCAGAACGGAGAACGGAGGACGGAAGTCCGCGAGGAGAGGAGACTACGTCGACGGTGCAGGCAAATCGGTGAAGGAGCAGTCCAAAGTCACCGTATTGTCGAGCGTCAGCATATCGAAACAAGAGAAGTCGCAGGATGCCGACATCGGCCAAAAAGACGACATCGAAGAGTGCGTTACCAGGTTTGTCGTAACGAAAATAGTCGACAACAAGTCTTCTGCTGAAAATTCCGAAGGTCAGAAACAGGATAACAGATCGTCGGACAACAGGCAAATCTTCAACGATGTGCTGAAGTTGAAATCCAAAGACGACGCCAACAGAAGCGGTTCGGATACAAAACAAACGTCGTCCGAGAAGAGAACCAAAGCGTCCAAAGAAAACGCAGACgaaaaatcgtataaaaaagGCGATACGAGCGGTCGTGTGTATAGCACTCGAAAAACTCGTTCTTCCTACGCTAAAATACGCGTCAAATCTAAAGAGAGTCTAATGGAGCCGGAAGACGAGCCCGGAAATGACGTCAACGAAAACAAGACTGCCGCCTCGAAGTCCACAGAGTCGCACGAGATCAAACGGAAAAGAGGTCGCCCGCCGATCCAGAAGACGACCAGCAGCAGTCCTGCGACACCGTCGAAGACTCTGGAAAAATCGCCGAAcaaagaagaaaacaaaaaatccagAATCGCGCCGACGAGCATCAACGTGACGACGTCTCATCTGCATTCAAAGGCGGACGTGGCCAAAATCAGTCCCAAGGTGACGAGGGACCAGTGCCGATTGTGCGGCTGCTCGGGCGACAGCGACTACGTCCCGCTGTTCGGCGAGCGCGCGTACGAGATGGACCTGCTCGGGAAGATTCACAAGCACTTGGAGGTCAAGATTTCCGAATCGGACGGTTTGCCGCGACAAGTCTGCGACGATTGCGCCAACAATGTGGTCAGCTGGGCTCGGTTTCATCGCTATTGTTCGCAGGTCGACGACGTGCTCAAGGAAGCGCGAGTACAGGGAAACAAGTGGAAACAGTGTAAAATGAACGACGCTAACGACAGCTCTGCGCCGACGTCTGCCGTCACGTCGGAAGGAAACAGAGTCGGGAAAGAGAAGGCGGTCGCCGCGGAGTCGGATGGCGAAGACCAGATCGAAAAGATGCTACGCGCGATGCACGAGAGCGAAGACGAATCAGAGCAGCCGATCGAAAAGCCTCGGAACGAGTCGAACGACAACGCGATCGGCGATTGTGAGCCGAGCGACGAGGACGACATGGTCGTGGAGTATTTGGACGAAGAACAGGATCTGATCGTGGAAGCTTTGTCCGCAAGCAAGCAGAAGAGACGCCGCGGCCATCAGGAAAACGGAACGGTAAAGAAGGAGAGCGCGACCGGCGCTCCCAAAGTCATCCGCGTCGACCGGAAATTATCGGACGTCGAAATAAAGCAGCTGCTGAACAGACTGGAACTACAAAACAAATCGACGACAAAGATAATGGTTCTGCGCGTCAATCCGATGCAGCATTTCAGCACGTACGACATCGACAACATAGTCAAAGACTTGACGGAGAAACGCAGCGAGGCGCAAAAGAAACGAACCGAGGACAATTCGGCGGACGGCGAGTCGAACGGCCGTTACGGCGAGATGGCGGCGTCGTACGCCCACTGCCGACTGGAGAGCATAAAGACGTCGAACGAGATGTATTTCAAATGCCTCGAATGCCGACTCTACCTTCCCGCAGAACAGATTCCCGCACACTCCCGGGCGGAGCACGGAAAGAATGTCGCGCTCTGCGACATCTGCAGTCTGTTACTGCCGTACGATTCGGACGAGAATAAACAGTTGTCGAAGCGCCACAACGATCTTCACGCGGCCGGGAAATCCTCGTCGCATCCGGACGTCATCGCGAACACCTGCAGAATGATGGAGAACGCGTCGAGACAAATCGATATCGATCGCGAATCCGAACAGACGCGGTCAGACAACCTCCTGGAAATGCTCGGGAATCGAATAGACGACAAGGCCGTCGCTTTTAAAGAAGAGTTCGATCGCGATGCCCAGGAAGCGGACAACGGCGAACCGCAGCCGGACAGGGGGCTTCAGCATCGCTACAAGTGCGCCTTTTGTTCGCTGACGTTCTGCTCTACGCCGCTGTATCGAAGTCACATGTCGACGCAACACGCCGGAGAGCAGTTCAATTGTACGACTTGTTCGGCGGTGTTCGCCACGCGAGCTAATCTCACGACTCACATAGCGCTCAAGCATCCGCATATCGCCGTCGACGCCGACGAGAACGGCTACGAAGCGACGGACGGCGCCGAGTACATGTGTGACACGTGCGGCAAGATATTTGCCAAGGAGGCCGTCTACCTCAAACACAAGGAGCTGCACGTCGGCGACGACTCTTCAGAGAAGCCTTTCGAGTGCCCTCATTGCGCTAAAATCTGTTCGACGGCTGCCGAGCTGCGCGATCACACCCTGGGTCACAGCGCGTGCGCGACGTTCCTTTGCGACCGATGCGGCCAGGCCTTCAGAACGTTCCAGAGCCAGCGCCTGCACAGGCGCCACTGCCGCAGCGGCCCGGGCGGTGCCGCGACGCTCGCCTGCACTCAGTGCGAGTACGCGACGCCTCTCTCGGGCAAGTTGCGCGCCCACGTCAGGGCGACGCATCCTAATCTCGGCGTCTTCGTCTGCGCCGACTGCGATCAGGATTTCCACACGGCGCGCCAGCTGAAGTTGCACCGGGTGCAGAGCCACGAACGGAACGATGCCGCGTACGCGTGTCCGTTGTGCGACTGGAAGTACCAGCACGAGCAGAACCTGCAGAAACACTTCGAGTACCACGTCGAGAAAGGACACGTACTCTGCAAAGTGTGCCATCAATTGTTCCAGCACGAAGGCGACGCGTTAACGATAGCCGACGTGCGGGCCCACAAGACGAGGCACAGTTCGATGGAGAACGCCGTATTCAATCGACCGTACAGTCCGAACAGCGCGCGGGTAGCTCCGCGAAGACAGTCGACGTCTCTGCAAGACGGCGAATCGATAGACGGGGCGGGCGGCGCCGCCTCGCTGCCCCCTCGCATGATGTGCAAGGACTGCGGCGAGGCGTTCTCGACGCCTGCTGAAATGCGCAAACATCAGAGAGTGCACAAGCCGTTCTATTGCGAAAAGTGCAAGTCCGTCTCGTTGAACGAAAATACTTTCCGTCAACACATGGACCAACACCACGAGCGAACGCACGAGTGTCCGTCCTGCGGCAAACTCTTCATGACTCGAAGCGCCCTGCAGCTGCATTCGCGGGCCCACACGACCGAGGCAAATCATTCGTGCGTCGTCTGTCAGCGCAAGTTCGTGCTCGCCACCGATTGGAGGAGACACGAGAGGTCGTGCCGCGAGTCGCACGGCTGGCCGCCGCAGCGGTCGACGCTCGTCGCGACCGAAGGTTCGTCGGCCGGTCAGCAGCAGCAGCATCACGCCGGAAGAAGGGCGTCGAGGGCCGCCAGAAACGCCTCCAGAAAGaacgcGAAACAAGAATACGCACTGATGATTGCCGGAGAAGACAACATTACTTACGAGTACATCGATCAAAGTATACAAAAGTCGTCGGACGACAgtGACCAGCCTCGATTGATCATCGACGCCGTGCCCATGAAACAAGAGCCGGACCTGATTCATTTGGTCTTAGAAGAGGGCGACGCGGCCAGCGCGGATCTAGAAGGCGCCATAGAAATCGACGAGTCCGAATTGGTGGCATTCCAGGAATGGCAGAAGGTGGCGGCGATGGCCGGAAGGAAACGCAAACTGTCTGCCGCCGACCCTAATTCCGATCCCAAACGACTGAAACAGTTCGCGGTCGTGGAAGGGAACGGAACGTTCGGAGGGAACGCCCACTTTGTGGCCGAGAACGACGGCGGCGCGGAATACGAACAGAACAGCGAAATACAGTACATCATTGCCAACGGAGAGAACGGCGAGGAGGCCAGGTTCTTTATTTCAGGCGAAACGGACGGGCAGGTGTTTGAAGGCGCTCCTCGGGTCGCGGCCGACGGCGACGGTCAGAACGCCGATCCGAACGCGAGCCCGGACGAAATGCAGGGCCCGGCCGAGATGGAAGCGGAGGATTTTCAGCGCTACGTCCTTCAGACGCAGAACGGCCAGTTCGTCATCCCGACGGACGGCCAAGTCGGCAACCAGTACATCATACCGGAAGTGGACGAGGAGGGGCGGCCGCGCGTCGTCGTCGTCGCAGGAATGACGGACGACGCCGAAGATCGGAACTACATCGTGCAGGACTTCAGCGACGGCGACGTCTTGGTGCACGACGACAGTTCGACGCAGAACTACGTGTTCGAAAGCGACGGCAACGCCGGCGTCTCGGAAAACGTGTCGTACGTGTTGAACGTGCCGAGGAAAGACGGAGTGGCGACCGTTTATTTGAAATCGGGCGCCGAAATGAACGAGTTCGACGAGGACGCGAACGAAGCCGCCGTCGCCAATCAGAATTACGTTATCGTCAACGAAAGTATGCCGGATCTCAATTGA
Protein Sequence: MSANAKKPNRIDKNVPTLPIRFRRQSASVIPVDVKINLVDCVKFPLFINVKDVKKRIKVARNIGESKDCEFVKNSHRSINKCKTARRPCKSIIVERHDYEKAANSGAAPKSERTKQVLKSIFQGASDPCRTTEKHAGRNLPLAGAPRAVVPNALPEPGLNTSDSDGRANRRGPSEHDSSARVASDEKPDDEYILPPIVPRVILQRECIELKTHHITKHDVAELADGELYIGSKNEFLTDSNKRLFVAEFYAKKSISLTALRNKAKMVVEREKMRKETAQRNDRADENAPSSADSALPSADSAPPSADNVESVEQNDAAAEDNGAGPSVELAEQPETAKRTEEAKSEEGVQPGPENIDEQTSNSSDNIIKQLTSIFENVEDYNESTDSVGLSKGVEESNENLKPLIDKGPDEDENQDGATALKEDSLKSQTLKESTTDSSAAVELAERSEKDKEINRSDEKTQQNKENKEKHKSIENEHKADSQTVDKESFQPVEKSSSSKNGESEHLKDEERREKSVIDAKAELKKGDAKKELKVDQQKNKLQKENLKTGSKVGEKDSGGKIAKYEGRTENGGRKSARRGDYVDGAGKSVKEQSKVTVLSSVSISKQEKSQDADIGQKDDIEECVTRFVVTKIVDNKSSAENSEGQKQDNRSSDNRQIFNDVLKLKSKDDANRSGSDTKQTSSEKRTKASKENADEKSYKKGDTSGRVYSTRKTRSSYAKIRVKSKESLMEPEDEPGNDVNENKTAASKSTESHEIKRKRGRPPIQKTTSSSPATPSKTLEKSPNKEENKKSRIAPTSINVTTSHLHSKADVAKISPKVTRDQCRLCGCSGDSDYVPLFGERAYEMDLLGKIHKHLEVKISESDGLPRQVCDDCANNVVSWARFHRYCSQVDDVLKEARVQGNKWKQCKMNDANDSSAPTSAVTSEGNRVGKEKAVAAESDGEDQIEKMLRAMHESEDESEQPIEKPRNESNDNAIGDCEPSDEDDMVVEYLDEEQDLIVEALSASKQKRRRGHQENGTVKKESATGAPKVIRVDRKLSDVEIKQLLNRLELQNKSTTKIMVLRVNPMQHFSTYDIDNIVKDLTEKRSEAQKKRTEDNSADGESNGRYGEMAASYAHCRLESIKTSNEMYFKCLECRLYLPAEQIPAHSRAEHGKNVALCDICSLLLPYDSDENKQLSKRHNDLHAAGKSSSHPDVIANTCRMMENASRQIDIDRESEQTRSDNLLEMLGNRIDDKAVAFKEEFDRDAQEADNGEPQPDRGLQHRYKCAFCSLTFCSTPLYRSHMSTQHAGEQFNCTTCSAVFATRANLTTHIALKHPHIAVDADENGYEATDGAEYMCDTCGKIFAKEAVYLKHKELHVGDDSSEKPFECPHCAKICSTAAELRDHTLGHSACATFLCDRCGQAFRTFQSQRLHRRHCRSGPGGAATLACTQCEYATPLSGKLRAHVRATHPNLGVFVCADCDQDFHTARQLKLHRVQSHERNDAAYACPLCDWKYQHEQNLQKHFEYHVEKGHVLCKVCHQLFQHEGDALTIADVRAHKTRHSSMENAVFNRPYSPNSARVAPRRQSTSLQDGESIDGAGGAASLPPRMMCKDCGEAFSTPAEMRKHQRVHKPFYCEKCKSVSLNENTFRQHMDQHHERTHECPSCGKLFMTRSALQLHSRAHTTEANHSCVVCQRKFVLATDWRRHERSCRESHGWPPQRSTLVATEGSSAGQQQQHHAGRRASRAARNASRKNAKQEYALMIAGEDNITYEYIDQSIQKSSDDSDQPRLIIDAVPMKQEPDLIHLVLEEGDAASADLEGAIEIDESELVAFQEWQKVAAMAGRKRKLSAADPNSDPKRLKQFAVVEGNGTFGGNAHFVAENDGGAEYEQNSEIQYIIANGENGEEARFFISGETDGQVFEGAPRVAADGDGQNADPNASPDEMQGPAEMEAEDFQRYVLQTQNGQFVIPTDGQVGNQYIIPEVDEEGRPRVVVVAGMTDDAEDRNYIVQDFSDGDVLVHDDSSTQNYVFESDGNAGVSENVSYVLNVPRKDGVATVYLKSGAEMNEFDEDANEAAVANQNYVIVNESMPDLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -