Vnig011923.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000032.1:4958246-4969080[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00058 0.016 16.2 0.1 3 23 1232 1252 1231 1252 0.97 2 6 0.018 0.49 11.5 2.6 1 23 1258 1280 1258 1280 0.94 3 6 3.2e-05 0.00087 20.2 2.7 1 23 1286 1308 1286 1308 0.99 4 6 0.015 0.42 11.7 0.2 1 20 1314 1333 1314 1336 0.93 5 6 7.4e-05 0.002 19.0 1.2 2 23 1343 1364 1342 1364 0.97 6 6 1.4e-05 0.00039 21.3 1.4 1 23 1370 1393 1370 1393 0.97
Sequence Information
- Coding Sequence
- atgCCGAGGCGTAACAAAGTCGATTACGATAGATTTGATATTTGCAAGCTTACCGATATCAGGAAAACAGAGTTCTTTTCACGGACGGaaagtaaattattaaatccACAAACGGAGTCACGTACAGGCTTAAGTAATTATGACAGACGATACGAGAACTCGCGTAACTATCAAAGAAGATCAAGATCAAGAACAAAGGAGCAGAGCAGTATTCGACATTTTTCACGTAATataaatattcagaaaaaaattgtcgatacccataatattatgttacgaGATGATTATCAACATCGAAGAAATTCTCGACCCGTTTCTAGAGATCGTATTCATTCTACTACAGAGCTTAGACATCGATACGATTCAAATGATTTTAATGACAAATTTAATCTGGAAGTGTCCGATCCGAGTAAACGCTATGATCAGTTTCAGAAGAGTTCGAGAGTACAAACACAAAACGCGGCGTACTTGGAAAAccaaaaacctatttttaacgAATCTGGTTTTTTACACACAGATAATAAGAACGATAGCAAACGTCCAGCTTATGACGAACGAGAATTGATTCATGATAACGGCGACGATCGTAAAGAACGATTGAATTGTACATCAGATTTTTATAGTAGCAGCAGAGATGTTGTTGTTCACGAGTACCGAGAATTTTCTAGATCAAACTCGAGAAATTCTTTAACGGACGATAGTTATTTGCCTCGCAGAAGGAAAGTCGGTGAACGGAGAGAAAGTTTCGATGACAGTGACGACGATAGAATATCCAAGGATCCAATTTTTCGTCGACATACAAATGAATCGAATGTAAATTCGAATAGACGCGAGAATTCGTATCGATCGAATTACGAACCAGTTTCGAGCGAGAGTGTGCGTTGGCTaagaaaaaatagaatagaaacGAACTCAGATAGATTGCCCTTAAATAACGATAATTATTTGCTAGATAAAACACTTAAAGACGAAAGAGGTGAGAATCAACACCGTCAAGATTATAAACCTGTCACGGAAGACGAAATAGAAGATGATTCTTGGTCAAGACGTCAAAGGATACGAATCAATTTTGATAGACCGCAGCCAAGTGACTATTTTCATAgtggtaaaaatataaatgacgaGAGAATCGATTACCGTGACGAAGATAACGATAGAAAGTGTGATGAATTTAAAGGAGGTAGTTACGTAAGCGATAGACAGAGTGACAATTGTCAGCCTCAGAGGAGTCTCAGAAATACGCGCTGGAGGTCCAGATCACGATCAAGAGAAAAACAGGCAAATAGCGAAACTTTTTTGCACTCAACTGGTGTTAATACAAGTATCCTGAATTCCGTTAAAAACCGGGAACATTATTTTAAAGATCGTATTTTTCACGGCCGAAATGAACCGgacttaaaattaaacaaatatgaaAGTCAATATCAACAAAGCTATAAATTAAGAGATGGGATAGACGATATCTGGCAAGGAAAGCAAAGAACAGAAACTAATTCAAACGTGGCTCGAGTAAATGACAATAGTGACTATTTTACACGacgtgataaaaaagtaattgAAGAAAAAATCGTTCACTGTGACATTGATAGAAAGTGTAATAGTAATAAACTAAATGATTATGAACTGAATTTGGGAAGCTATGATTTAAATAGACGTGAAAATCCATATCAAAACAGACATGTATCATCTCCAAAAGAGGAGATAGGTAATGTTTCGTGGCCAGAAAAACgaagaaaagaaataaattttgtcgGGCCGCAAGTAAGTGACAATAGTCGTTATTTTTCACGAAATAAAACTGAACAGAAAATGGATATTGATGATAGAAAATACAAAGATATCGATGATAGACTATACAAGGATATTGATGATAGACAATATAAAGGGCTCACTGCAAATTACAGTTCCATTAATGACAGGCAAACCGCTCTTTACCAGTATCAAAGAAAACACCCAAATAATGCACGTGGAAAGTCAAATTCACGGTCAAAAGAGCCTATGGACAGTTTTAAACACCAAATAAGCAAGGAAACTTTGACTTGTGAGCGTTTTCAAATAAATGGTGCTAACACTTGCCAAAATAATGACTCTGATTTAAGAGTTAGATTTAATCGAGGCCATACAAACGAATTGAAATTTGATCACAGAATAGATACGACTTCTGATAGACTGGAATCAAATGTCTATAATGACTATTTGTTTGGGAAAAAATTTGAAGATTACAGAATAGATTTTGATAAAAGTGAGAATGATAGAAAATATAACGAATTTGAACCAAATAGTTACATCGGTGATAGACAGCCTGTGTCAGGTGAATATTTATCAAGGTCAAAAGAACGAAGTGTTTCACCGTCAGACAGTATAATACTTGAAAGAAGACAAATAGATTCCGATATTACCGATAGACACAATTATTTAAGCCGAACTAGAGAAGCGCGATTTAAATGTCGTAGATCAAATTTCGAAGCGTCGGAGAATCGAAATATTCCAACCGATACTGATTTGGAAATCGACGATTCCGACTCGACGTCGATGAGATATTACGATGACGGCACGTGTCGACAAAGAGAATCGGATATATATTCTCGAGAATCGCCAATCGGAAATACAGAAATTGCAATATGCGatcaaaaagaagaaatattacatACGGCGAAATCTAACTATGATTTTGAGGGCTTAAACTATtggtatgatttttttaaatcaaaatctaATGAAGATGTTCGTACCGTGTGGAATTCAGTGtcatcaaaaaatcaaaaacgcaTCGAAATATATTGTATGGTATGTAATCATTATTTCGATTCAGTGCCGCAGTTTCAAATCCATACCGGATACGAAAGACATTCTAAAAGCGAAACAGATACTTTCGGTAATAATCCACCTGCTCCGATAATTGTGAGGAGGAGCCCTCTGGTCGTACGAGATGTACcgaagcattttaaaaatgatatcgGAACGTTCGGCGGTATTCCGCCTCGTCCTGAAATCGTGAAGCAGAATCCTCCGGTTGTACGAGATGTACCGAAACAGTTTGAAAACGAGACAGAAACTTTTGGTAACATTCCACCTCCTCCGGTAATTGTGAAGAGCAGTGCTCCGGTTGTACGAgatgtaaaacaaaaaagaattgtaCATGTAAATGATACTAAACCCGAAAGTTGGAAACTGCACAAGCGTTCCGAGAAACATAAAAAGAATTTCAGAGATTACCGAGAAAAAATTGCGGCAGCTTCAGCTGAACCTGATCTAGATAAAAGTAATAGTGAAGAATTAGTCGAAACAGCTTCAGggCGCGGTGGGCTTGGAGCTGGCGCGCTGGGACTCCCGGCAGCCGTAGGCGGAGGCGGATGGAGCAGTGTAGGAGTTGCTCGACCGCCGCCGCCGAATTCGGTGGCGGCGCCAACGGTCTCGGCACCGGACCTGTTGGCCACGATTAGTATGTTCGAGCAGCATGTCAAAGCGGAACCGATGGGATTTTATGCGCCGCCAAACAACAGAGATTCCAGCTCGAGTCAGTCGTCTGTTATCAATGTGCCTGAGGAGAAAGAGCAGCAGCTACCACAACAACTGACCACCGGTGTGTCGTGTCCACAAGGGCAGCAAGGTCAAGGTCAAACGCAAGTGCAACAAGGCCAGACGCCCACCACCACTACAAAATCAAGCCACAGCCGTAGCAAGCCCCAAGCATGCAAAGTTTGCGGTAAAGTGCTGTCGTCTGCCAGCAGCTACTACGTGCACATGAAATTGCATTCTGGGAATAAGCCGTTCGCGTGTTCTTGCTGCGAGGCAGCGTTTTGTCGGAAGCCCTATCTCGAAGTGCATATGCGTACTCACACAGGCGAGAGACCGTTCCAGTGCGAGCTGTGTTTGAAACGATTCACGCAAAAGTCGTCGCTGAACACTCACAAGCGCGTTCACACGGGCGAGCGGCCCTACGCCTGCGACATCTGCGAGAAGCGTTTCGCCGTCAAGAGCTACGTGACGGCTCACCGCTGGTCGCATGTCGCAGACAAGCCGTTGACGTGCGATCGGTGCAGCATGACGTTCACCAGCAAGAGCCAATTCGCCATTCACATCCGAACTCATTCGGCGGCACAGAGTTACGAGTGCAACGTCTGCGGCCGGACGTTCGTCAGGGACTCGTACCTTATCAGACATCATAATCGCGTGCACAGGGAAAATCAGGGCCAGCAAAATCAAAATCAACAACAGGGAACGGCCGCCGGACAACAAACTCAATCTCAGAACGCCGGTggtcaacaacaacaacagcagcagcaacaacagCAGCAGCAGTCTACGAACAGTCCTTTTAATAATCAGGCGACGGCCGCCGGAGCATTGCGCTACGTTACGACGAGCACGCAGATGTCTCCGATGCAAGACAAGTCGCCGCCGGCTTCGGTGGGACCTCCTTCGGTCGGACCGCAGTAG
- Protein Sequence
- MPRRNKVDYDRFDICKLTDIRKTEFFSRTESKLLNPQTESRTGLSNYDRRYENSRNYQRRSRSRTKEQSSIRHFSRNINIQKKIVDTHNIMLRDDYQHRRNSRPVSRDRIHSTTELRHRYDSNDFNDKFNLEVSDPSKRYDQFQKSSRVQTQNAAYLENQKPIFNESGFLHTDNKNDSKRPAYDERELIHDNGDDRKERLNCTSDFYSSSRDVVVHEYREFSRSNSRNSLTDDSYLPRRRKVGERRESFDDSDDDRISKDPIFRRHTNESNVNSNRRENSYRSNYEPVSSESVRWLRKNRIETNSDRLPLNNDNYLLDKTLKDERGENQHRQDYKPVTEDEIEDDSWSRRQRIRINFDRPQPSDYFHSGKNINDERIDYRDEDNDRKCDEFKGGSYVSDRQSDNCQPQRSLRNTRWRSRSRSREKQANSETFLHSTGVNTSILNSVKNREHYFKDRIFHGRNEPDLKLNKYESQYQQSYKLRDGIDDIWQGKQRTETNSNVARVNDNSDYFTRRDKKVIEEKIVHCDIDRKCNSNKLNDYELNLGSYDLNRRENPYQNRHVSSPKEEIGNVSWPEKRRKEINFVGPQVSDNSRYFSRNKTEQKMDIDDRKYKDIDDRLYKDIDDRQYKGLTANYSSINDRQTALYQYQRKHPNNARGKSNSRSKEPMDSFKHQISKETLTCERFQINGANTCQNNDSDLRVRFNRGHTNELKFDHRIDTTSDRLESNVYNDYLFGKKFEDYRIDFDKSENDRKYNEFEPNSYIGDRQPVSGEYLSRSKERSVSPSDSIILERRQIDSDITDRHNYLSRTREARFKCRRSNFEASENRNIPTDTDLEIDDSDSTSMRYYDDGTCRQRESDIYSRESPIGNTEIAICDQKEEILHTAKSNYDFEGLNYWYDFFKSKSNEDVRTVWNSVSSKNQKRIEIYCMVCNHYFDSVPQFQIHTGYERHSKSETDTFGNNPPAPIIVRRSPLVVRDVPKHFKNDIGTFGGIPPRPEIVKQNPPVVRDVPKQFENETETFGNIPPPPVIVKSSAPVVRDVKQKRIVHVNDTKPESWKLHKRSEKHKKNFRDYREKIAAASAEPDLDKSNSEELVETASGRGGLGAGALGLPAAVGGGGWSSVGVARPPPPNSVAAPTVSAPDLLATISMFEQHVKAEPMGFYAPPNNRDSSSSQSSVINVPEEKEQQLPQQLTTGVSCPQGQQGQGQTQVQQGQTPTTTTKSSHSRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFACSCCEAAFCRKPYLEVHMRTHTGERPFQCELCLKRFTQKSSLNTHKRVHTGERPYACDICEKRFAVKSYVTAHRWSHVADKPLTCDRCSMTFTSKSQFAIHIRTHSAAQSYECNVCGRTFVRDSYLIRHHNRVHRENQGQQNQNQQQGTAAGQQTQSQNAGGQQQQQQQQQQQQQSTNSPFNNQATAAGALRYVTTSTQMSPMQDKSPPASVGPPSVGPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -