Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000001.1:15983337-15986769[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0033 0.092 13.8 3.3 2 23 174 195 173 195 0.96

2 7 0.0002 0.0054 17.7 0.7 3 23 206 226 206 226 0.99

3 7 4.3e-05 0.0012 19.7 3.1 1 23 230 252 230 252 0.98

4 7 0.0086 0.24 12.5 0.4 1 23 258 282 258 282 0.96

5 7 0.00013 0.0037 18.2 2.3 3 23 290 310 288 310 0.95

6 7 0.002 0.056 14.5 4.8 3 20 318 335 316 338 0.88

7 7 0.00047 0.013 16.5 5.0 1 23 344 366 344 366 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0033	0.092	13.8	3.3	2	23	174	195	173	195	0.96
2	7	0.0002	0.0054	17.7	0.7	3	23	206	226	206	226	0.99
3	7	4.3e-05	0.0012	19.7	3.1	1	23	230	252	230	252	0.98
4	7	0.0086	0.24	12.5	0.4	1	23	258	282	258	282	0.96
5	7	0.00013	0.0037	18.2	2.3	3	23	290	310	288	310	0.95
6	7	0.002	0.056	14.5	4.8	3	20	318	335	316	338	0.88
7	7	0.00047	0.013	16.5	5.0	1	23	344	366	344	366	0.98

Sequence Information

Coding Sequence: ATGCAAAAAGTTTGTCGGTCTTGTATGTCTGAATCACAAGATATGCGTTCGGTGTTTAGTTCAgaacataatacaaaaatatcagAAATGCTAATGGCGTGTGCTTCCGTTCAGGTAACTTCAAATGACGGTCTGCCCGAGGCAATGTGTGTGTCTtgcatatatttattaaattcagcaTTTTCATTCAAGCAATTGTGCGAGCGCACAGATAACACTCTGAGggaatgtttatttaaatctttACAAAAGGTCGAGTCTTCTCAATTTAGCATCGAAGAAGTTGACATCAAAGAGGAAATTGAGTCGGACAACTCTTGTGACAAAATATTCTTGGAACAGAGTCCAACAATAAACAGAAAGTCGAGAAGAAAGCAGTTGCCTACATTGAAAAAGTTCAACAGTCTAAAaggaaattataaattaaaaagaaaaagcaaattaattaatgtcaataacgtattaaaattagaagaaaatgacgaaaataatattgaaaattcaCCGGAATTCCAACTGACGTGTAAATTCTGTAACGAAGCAtgcgtaaataaaaattatttaacgagACACGAAAAATCGCACGCCCTAGAAAATGTGGAAATTACAATAGGCTGCAGTGTGtgtgataaaatatttgtttcgcGTCAGGcgttaaaaaatcacaaaaaaatacattacaagCATTACAATTGTAAATTGTGCGACAAGAGTTTCAAGTCACCTCATGGATTATCGTATCATGTGAAAAGGCACAACGGAATAAAAGATTTTGTGTGTCCTGTAGAAAGTTGTCAGAAGAAATTTACGATCAAACAGGCCCTTTCCAAACATTTAACTTTACATTCGGCCGAGAAGAAACATCTCTGTTCCGAGTGTGGAAAATCATATTCGACGTACGATTCGCTCAGCTACCACCTTAAACAACATTTAGGCCAAAGACCGTATTTGTGTATACATTGTGgcAAAACATTTAAGCAGTCGTGTCATTTAAAAGCCCACATGTGGGTCCATAGTGGAATCAAGCCTCATAAATGTGAGGGTTGCGGTAACAGGTACACCAGTGGACAtcaactaaaaaaacatttacgaagACATTGTGGCAAGAATATTAATAACACTACAGGTTCGACGATTTGTGATTCTaatactgaaataaaattaacgacaAAAGCGCAGCCGTAA
Protein Sequence: MQKVCRSCMSESQDMRSVFSSEHNTKISEMLMACASVQVTSNDGLPEAMCVSCIYLLNSAFSFKQLCERTDNTLRECLFKSLQKVESSQFSIEEVDIKEEIESDNSCDKIFLEQSPTINRKSRRKQLPTLKKFNSLKGNYKLKRKSKLINVNNVLKLEENDENNIENSPEFQLTCKFCNEACVNKNYLTRHEKSHALENVEITIGCSVCDKIFVSRQALKNHKKIHYKHYNCKLCDKSFKSPHGLSYHVKRHNGIKDFVCPVESCQKKFTIKQALSKHLTLHSAEKKHLCSECGKSYSTYDSLSYHLKQHLGQRPYLCIHCGKTFKQSCHLKAHMWVHSGIKPHKCEGCGNRYTSGHQLKKHLRRHCGKNINNTTGSTICDSNTEIKLTTKAQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01531285;
90% Identity: -
80% Identity: -