Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000011.1:5594273-5602656[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0029 0.08 14.0 0.1 2 23 172 194 171 194 0.93

2 17 0.3 8.2 7.7 1.0 1 23 366 391 366 391 0.94

3 17 0.029 0.79 10.9 0.5 1 23 627 650 627 650 0.96

4 17 0.36 10 7.4 0.1 3 23 661 682 659 682 0.90

5 17 8.2 2.2e+02 3.1 2.7 1 19 733 751 733 756 0.73

6 17 0.051 1.4 10.1 6.0 1 23 765 788 765 788 0.96

7 17 3.6 98 4.3 0.7 2 23 831 855 830 855 0.89

8 17 1.2 33 5.8 0.7 2 23 868 890 867 890 0.96

9 17 3.5e-05 0.00097 20.0 0.3 1 23 927 949 927 949 0.97

10 17 5.6e-05 0.0015 19.4 1.5 1 23 954 976 954 976 0.98

11 17 2.1e-06 5.8e-05 23.9 4.4 1 23 981 1003 981 1003 0.98

12 17 0.00029 0.008 17.1 1.7 1 23 1009 1031 1009 1031 0.99

13 17 9.8e-06 0.00027 21.8 3.1 2 23 1038 1059 1037 1059 0.98

14 17 9.3e-05 0.0026 18.7 0.3 2 23 1066 1087 1065 1087 0.94

15 17 0.00052 0.014 16.3 1.0 3 23 1095 1116 1094 1116 0.95

16 17 0.00021 0.0059 17.6 0.2 1 23 1123 1145 1123 1145 0.98

17 17 1.1 31 5.8 0.0 2 23 1152 1174 1151 1174 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0029	0.08	14.0	0.1	2	23	172	194	171	194	0.93
2	17	0.3	8.2	7.7	1.0	1	23	366	391	366	391	0.94
3	17	0.029	0.79	10.9	0.5	1	23	627	650	627	650	0.96
4	17	0.36	10	7.4	0.1	3	23	661	682	659	682	0.90
5	17	8.2	2.2e+02	3.1	2.7	1	19	733	751	733	756	0.73
6	17	0.051	1.4	10.1	6.0	1	23	765	788	765	788	0.96
7	17	3.6	98	4.3	0.7	2	23	831	855	830	855	0.89
8	17	1.2	33	5.8	0.7	2	23	868	890	867	890	0.96
9	17	3.5e-05	0.00097	20.0	0.3	1	23	927	949	927	949	0.97
10	17	5.6e-05	0.0015	19.4	1.5	1	23	954	976	954	976	0.98
11	17	2.1e-06	5.8e-05	23.9	4.4	1	23	981	1003	981	1003	0.98
12	17	0.00029	0.008	17.1	1.7	1	23	1009	1031	1009	1031	0.99
13	17	9.8e-06	0.00027	21.8	3.1	2	23	1038	1059	1037	1059	0.98
14	17	9.3e-05	0.0026	18.7	0.3	2	23	1066	1087	1065	1087	0.94
15	17	0.00052	0.014	16.3	1.0	3	23	1095	1116	1094	1116	0.95
16	17	0.00021	0.0059	17.6	0.2	1	23	1123	1145	1123	1145	0.98
17	17	1.1	31	5.8	0.0	2	23	1152	1174	1151	1174	0.93

Sequence Information

Coding Sequence: ATGTCATCGGATAATGAAGAAAACGTAATTTGCGATGTAAGTCCCAGTGAAATGATTGGGCAAACTATTTTAAACAAAGTCCCCATTAAAAGACAACTGAAACCAGAATCAAAATCAAAACGAGTTAGAATTAGAAATTCTCAAATACAACCGCCAATTACTGTATCGCTGGAAACAGAAATACCTCAACCGGATGCGCCACCGAATCCAGAACAAATAATTGTTGGTCGAGTTTCAGCACACGAAGAAGTTTCAATTCACGAACGTTTATTAGAATTTAGTAAACGTCCAAATGTTACCGATGAAAcagttaaagaaaataaaacaaataaatctatAACGATCGGACCTCCATTTGTATGTGTGTACTGTCAATGCTGGTTTTTGGTACGAGGAAAATTAACGGTTCATTATGTAACCAATCATAATTGCGAACATTGTAACCTTTGTAATTTACTTTTCGAAACGATAACAGAAAAAATGCATCATgagaataaaattcattttccCATCCAATGCGAAGTATGTTCTGAGTCTTTCAGGGATAACTGGTTATTAAACGAACACTATGAAAATGAACACGATACGATTTCGTGTTTATTTTGCGGAATACTTATCCAACCGAAAGCATTCTACGTAAACCATATACGTAGGAAACACGTCGTTCATGATCAATACTTTGAAACAGAAGATGGCTTGAAAATAGTCGATAATTGGGATTCGAAATGGAGTTTTCGTTGTAGGTTATGCAACAAAGAACGAAAGAAAGTTGATTTTTTTGGTCATTACAACATGCATCACAAAATAACTGTATCGTGTTTTATTCAATTACTGTTTAGTGAAAACATCAACGTCAATGTCGAAGGAAATTCAGATAAAATATCGAACGATGTTTCGGAAGCGTTAGATTGCAGCATGAATAAATATTCATCGGATGATCTTACGTGTAAAATATGCATGACGAAAGATAATAAAATCATTCCTCCCGAGTTCCACAAACTTTACTGCGCGAGAGAAATCGGTTGCAAGCATTGTTTAAACACTTTTAAAGACGAAGACAGTTGCGATTTACACATCGAAAAGATGCATAGAAATTTTAAGTGTAGTCTCGGATGCAGTCAAGTTAGTTTCTCGAACGAGGCTCAACTTCAGtcacattataataaatttcatgATATCGTACCCTGCCGTTATTGCGATATATTTGTGAGTGCAGCCAACGATAAATACGAACATCATTTAAAAACACAGCATAATTACAAACCGGTGATTATGAAAAAGTTGTCCAACGTTTCGTTATTCCAGTGTATTAAACGAGACGACAAAAATATAGTTATTTGTTGCATGTGCGATAAGAGTTTAACAGAATGGGTCAATAACATTGAAGCTATGTATTTGCACTACGCGCAAGATCATTTCGTTACGATGAAATCGATTTTTAGTCTTATATCTTCGAATCCATTGCCGGTCGAAAGTATCGATCGGACAGATTCCATGAACGCGCCTTGCAAGCAAGCACTAGAAACTACCAATAATGTTGATAAACAATCGAGCGAAGAAGatgaatttaaaacaaatgaatgcgTTGACGTGAAACAAGAAGTTGAAACTGATTCTGAACAAGAAAATGAAGAAGTTGTTATTGATGATGCGACAGAAGCTTTGAGTGATATGGACCCATTGGAAGTAcagtgcTTTGTCGACGATACGAGTAATGATGAACAGAGTGAAAACGAATTAGAAACCGATCCagaattggtaaaaataaaaaatgaaccaaCCGATGATTCTGATAATGATTACGAATACGAAAGTGGCAAAAAACTGCAACGTGAGCGTCCGctgttccatttaaaaaaagattctgGAGATAGGAAATTTACCTGTGATAtgtgtgaagaaaaaacaacaacaaaacgTGAACTTTTAGAACATTCTAACAGCATCCACGGGTTTGTTGCTAAAGTAGGACCTTTGACTTGTATCGAATGTCCCGAAACGTTTTCGAACGAAAGCATTTATGAGCGACATATGATTAACATTCACGGAAGAGAAATTATTCTAAATGAAAATTGTGAAAGAATTCACACATgttcattttgtaattttactgGATCCAAAAAATCGACAAGGTTACATATTCGCGAAGAACATACGAACGATATTGAAGAAGGTCGAGCCAACAGAATTTTGGGTTTTAAATGCAGATATTGCGATGAGTGTTTTTGGAAAACTGATTCGAGAAATTCGCATGAAATTCAAAATCATTCCGATAAATATTCAAACGATTtctttaaatgttttgtttgctACGAAGTGTTCAGCAGTAAAATATGTTTAAAACGTCACGTTCATTCGAGACACACTTTAGAACCAAAATATCGACCCCAAAGCATATCGTATAAGTGCCTGAAATGTTTAGTTTTATTACCGGGACTTGACGAAGCCAGATCCCACTTCGCTATGCAACATCCGATGCTCAAAATTTTACGATGTGCCATCAAAGGCTGTAATGCTcgtcttaaaacgaaaaaaacgtTTACTATGCATGTCAAAaatgttcatactaaaaaaaggaaaaacccTTTCGATGGCCCATCAAGCTGTGAGCTCTGTGGAAAATGGCTTTCAAATAGCAGGTCAGCCACAACCCATTATCGTATGAAACATGGTCAAGAAACAAAAGTAGGGTACGGTTGTCGTTTATGCAAATTACGCTTTGACAGCACTGAAAAACGGAAACTACATTATGCAACGACTCATTCCGGAACAGCAGCTTATCAATGTCCCGAATGCGGAAAAGGTTTTAATAGTAAATCGGGTTTGTATGGGCACAAACAACTACACATGAACAATTCGTTTGAATGTCAGTACTGCAAAAAGTCATTTGTGCGCCGCGATACGTACAACGAGCATTTGTTAATACATTCGGGCCCTCGTCATCAGTGTCCGTTCTGCTCACGTTCGTTCACCCAACGGAGTAATCTGACGCGTCATACGCGCATCCATACGGGCCAGAAGCCCTACAAGTGCACGTGGTGTCCAAAAAGATTCAGCGACAAAGGCGCGTGCAACAGCCACATTAGAGTGCATACCCGAGAGGAGGAAAGTCAGTGTCCCTATTGCAACAAAACGTTCAGCAAGAAACAAAAGTTGAATTATCACATCCGAAAGCATACTGGCGAAGGTTTGCTACCGTGCCCAACATGTGGCAAGCAATTTACCAATAGTTTTTCTCTGAAGGAACATCGAGTAATCCATGAAACAAGTACCCAGTTACTATGCGGGCAATGTGGTCGAGGGTTCAGTCACGAAAGATATCTTCGGCGACATATGCTCGCTATGCATACAGCAAATGGCCGACGATACAGTTGTCCGTTGTGTGAAAAGAAGTTTGTTGCGCAGAATCAACTTAATATACATGTGATGACACATACTGGTGTCAAACACATTCAGtGTCTTCTTTGCGAAATGGCGTATGCTTCTAGAAAAAGCATAATTCGACATTTAATCCAAGCGCACAATATAACGCCTTCCAAAGACGTAGAatcttattcaaaatatttccatcaAATGTCTGCTGAGGAAGCCGGACTTGTGATTCCAGGGCATGAAGACAACGAATACTCTGATGATGAATCACCGACAATGGTTCCTTTGAAAACGAGTATCAATTTAGCTGAAGCACTTAAGCTAACTGAATTTAAGAATTTTCTAGTTGGTAATGATTTGAGctcattacaaaatataaaaccaaATAAGCTGTTGATAAAACCATCTGATAAAATTACATcaccaaaaaaacaaaagaagaaagGGAAAAAGAAGAAGGAACACGTTTCAGAAGATCAAGAATTGAATAAAAGAAAGATGAAAAATAAGAATGCCAAAAAAACAATCGATAAAGGAAATGAAAAACCAGTTGAAACAAAACGACGGATTATTAAAAAACCTAAACGTTATGAAGATGAATTATCGGATTTTGATGAGGTTAATTTTGAGCAAAAACAGATAGAAACCAAAAgcagaaaaataagaaaaccaAAGCGTTTTTGTTACGAATTTGATGAATCATTTTCTTCAAAAAGGAAATATACAGAAAATTCAGTAGAATTAATGGcagatattcaaataaaaaatgaaccgGAAGATGAATATAATTCAGACCcaaaagaatattaa
Protein Sequence: MSSDNEENVICDVSPSEMIGQTILNKVPIKRQLKPESKSKRVRIRNSQIQPPITVSLETEIPQPDAPPNPEQIIVGRVSAHEEVSIHERLLEFSKRPNVTDETVKENKTNKSITIGPPFVCVYCQCWFLVRGKLTVHYVTNHNCEHCNLCNLLFETITEKMHHENKIHFPIQCEVCSESFRDNWLLNEHYENEHDTISCLFCGILIQPKAFYVNHIRRKHVVHDQYFETEDGLKIVDNWDSKWSFRCRLCNKERKKVDFFGHYNMHHKITVSCFIQLLFSENINVNVEGNSDKISNDVSEALDCSMNKYSSDDLTCKICMTKDNKIIPPEFHKLYCAREIGCKHCLNTFKDEDSCDLHIEKMHRNFKCSLGCSQVSFSNEAQLQSHYNKFHDIVPCRYCDIFVSAANDKYEHHLKTQHNYKPVIMKKLSNVSLFQCIKRDDKNIVICCMCDKSLTEWVNNIEAMYLHYAQDHFVTMKSIFSLISSNPLPVESIDRTDSMNAPCKQALETTNNVDKQSSEEDEFKTNECVDVKQEVETDSEQENEEVVIDDATEALSDMDPLEVQCFVDDTSNDEQSENELETDPELVKIKNEPTDDSDNDYEYESGKKLQRERPLFHLKKDSGDRKFTCDMCEEKTTTKRELLEHSNSIHGFVAKVGPLTCIECPETFSNESIYERHMINIHGREIILNENCERIHTCSFCNFTGSKKSTRLHIREEHTNDIEEGRANRILGFKCRYCDECFWKTDSRNSHEIQNHSDKYSNDFFKCFVCYEVFSSKICLKRHVHSRHTLEPKYRPQSISYKCLKCLVLLPGLDEARSHFAMQHPMLKILRCAIKGCNARLKTKKTFTMHVKNVHTKKRKNPFDGPSSCELCGKWLSNSRSATTHYRMKHGQETKVGYGCRLCKLRFDSTEKRKLHYATTHSGTAAYQCPECGKGFNSKSGLYGHKQLHMNNSFECQYCKKSFVRRDTYNEHLLIHSGPRHQCPFCSRSFTQRSNLTRHTRIHTGQKPYKCTWCPKRFSDKGACNSHIRVHTREEESQCPYCNKTFSKKQKLNYHIRKHTGEGLLPCPTCGKQFTNSFSLKEHRVIHETSTQLLCGQCGRGFSHERYLRRHMLAMHTANGRRYSCPLCEKKFVAQNQLNIHVMTHTGVKHIQCLLCEMAYASRKSIIRHLIQAHNITPSKDVESYSKYFHQMSAEEAGLVIPGHEDNEYSDDESPTMVPLKTSINLAEALKLTEFKNFLVGNDLSSLQNIKPNKLLIKPSDKITSPKKQKKKGKKKKEHVSEDQELNKRKMKNKNAKKTIDKGNEKPVETKRRIIKKPKRYEDELSDFDEVNFEQKQIETKSRKIRKPKRFCYEFDESFSSKRKYTENSVELMADIQIKNEPEDEYNSDPKEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01531330;
90% Identity: iTF_01531330;
80% Identity: -