Vnig001963.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- zcchc4
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000003.1:11498038-11508368[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.3e-05 0.00092 20.1 4.9 1 23 477 499 477 499 0.98 2 11 0.0037 0.1 13.6 6.3 1 23 588 610 588 610 0.98 3 11 0.00051 0.014 16.4 0.3 1 23 685 707 685 707 0.98 4 11 0.81 22 6.3 0.8 1 23 713 734 713 734 0.95 5 11 0.0011 0.031 15.3 2.6 1 23 739 761 739 761 0.96 6 11 0.00014 0.004 18.1 1.1 1 23 767 789 767 789 0.95 7 11 2.2e-05 0.00062 20.6 5.9 1 23 795 817 795 817 0.98 8 11 3.4e-05 0.00094 20.1 4.7 1 23 823 845 823 845 0.97 9 11 0.0014 0.039 15.0 1.5 3 23 853 873 851 873 0.96 10 11 1.3e-06 3.6e-05 24.5 0.3 1 23 879 901 879 901 0.98 11 11 3.7e-06 0.0001 23.1 0.7 1 23 907 929 907 929 0.99
Sequence Information
- Coding Sequence
- ATGGATAACACTAACGGTGTAGAAGTAATAATTGAAGATTTATCAAATCATCCCAAATGCCCACATGGTCCAACGTTATTGTTCTCTCGTTCGGTTAATTGTTCAGGACGTGTGAGGCGCAGATTTTATGCATGTGCGGCATGTAGAGACCGTAAAgactgttcattttttttatgggAAGATCAAATTGATAAAGTGACGTTTAAAAAAGAAGTGGTTAAAGTTGAAAAGCAGAAGCTGGTGTCTGATATAAATCACAAAGAACTGTATCAGAAATTTCATAAGTTACTACAACAGCCACCAAATCGTCGTTACTATTGCCATAATTGCAATATATTGCTTACTGATAAAATTTCGCATGGAAGCCACCAGATTATATCACCTTTAAGTGACCACTTATTACAAAATCCCACCAAGTTTCTTAAACcaaaagaaaattcaaaaaaagaagcTCAGTACTTGTTTGCAGAAAGTTCAACAAAAGTGATAATTGatacaataaaacatttgaatctaagaaatattCTATGTATTGGAACACCACGCATTCatgaatacattaaaaataatggcGAGACGTATAAAATGAACAGTCTTCTATTGGATTTCGATGAAAGATTCCACAATTTTTTTGGACCGCTTGAATTTTGTTGGTATAATTCATTCAATCATCATTTTTTTGGTGGAACCGCAGCAAAAAATGTATTCGAAGAGTTCCTTCAATCGGAAAACGGAAAACATTCTTGCATTATAATGGATCCTCCATTTGGTGGTCGAATTGAACCTTTGGCTCACAGTTTGCGACTTATAAATACGCGCTACCAacagttaaataaaacaaaaaattcaatacCAACATTGTGGATATTTCCATATTTTATGGAACCACAAATTCTGAATAGTTTGCCAGATTTTATTATGTTAGATTACAAAGTCGATTATGATAATCATTCGTTATTTTCCAATAAATCAAAGGGTCGAAAATATGGATCGCCTGTTAGAATGTTTACTAACATCTCAGCCAGtcAAATTCCGTTCCCTACTGAGGAAGGTTATCGTTACTGCAAGGCATGTAAACGTTGGGTATCGTCTGAAAATAAGCATTGTAATATTTGTAATTGTTGCGCATCAAAAGATGGAAGAACGTACAAACACTGTAACGTTTGCAGCAGATGCGTCAAACCTTCGTGGCAACATTGTGATAAATGTGAGAGATGTTGTCTGCCAACACACAAATGTGGAGAATTTATTCCATCGACGGACTGTTTCCATTGCAAACAACATGgtcacaaaaaaaatcagtgtCCCAATTTAAATACCAGTTCAAGGAAGAGACGAAATATATCTGAAAGTGAAACTGTGGATAAAAACAATATGAAGAAAATGCAAATTGTTAGAAAAGTAGATAGTAGAAATGTAGATTCATTTCATACTTGTAGCGTCTGTTCGAAGAGTTTTAGCaaattaaatagtttaaatcgTCACATGAAAAAACACAAAATCACTGAATCGGATACCGATACGAGCTCGTGCTCCGATAATCAGGCTGATGTATCAAACGATGTACATATAAAAGACGAAAATGAAAGTGAAGAAGAAAATCATAATCCGAATTTTCATTCAGATATAACAGACAAAGAAAATAATGGAATAACGAAAAACAGTACTGATGTAGAAAatctgaaaacaataaaaacagaaGAAGACACACAAGCCACAGTTGAAAATCGGAtgaaaccaaaaaataaaaaaaatacaaattatttttgtaaaaaatgtgataaaagttataaaaagctAGCTTACTATAACAAGCATTTGCATACTCATATTTCTAAGAAAACTGACGATAGTAAAGAATTAACAGCAGACGATTTTTTGTGCGTGAAATCCAAACTCGATCGCAATGTAGATAATGTTAAACGCGATTTGAACAATTATTCCAACGAAAATATTGAcgtcaaaaaagaagaaattgcaGGTCAAAGTAAAGGGCgtataacaaagaaaaaaatagtttcaactAAAGTTAAGAGATGCCGATTAAAGGAATATCCTTGTCCTAAATGTCCAATGAAATACAAAAACGAAGTATGGTTTATTAGCCATTTAAAAACTCACAGTGAAATAAAGTCGCACAATTGTAGTATTTGTGACGAAACGATCTCGTTTGAAATGTTTGAACAGCATATGGCAACGCACATTGGCGAAACTCACATATGTACGATCTGCGGAACTCACTTCAGATGGGCGAGTGGATTAAAAACGCACATGAGGCAGCACAATAACTACAAACCATTTTTATGCAGCACTTGCGGTAAAGGTTTTACGTTGAATCGTTATTTAGAACAGCATTTACGAAGTCATACTCAAGAAAGACCCCACGTTTGTTCGTATTGTCACAAAGGATTTATACATAAAAGTAACTTAGTTGAACATTTACGTACTCACACGGGAGTTAAGCCGCACGTTTGCACTGTATGTGGAAAAACGTTTGCGCATTACAGTGGTTTGACGCAACATCACAGAGTACACACGGGTGTCAGGAAACACTTGTGCAACATATGCGGCAGATTATTTAGAACTGGCGACAAGTTGAGAGATCATGCGCGAACGCACAGTGGGGAAAGACCATTCGTTTGCGCTGAGTGCGGCAAAACGTTCACAAACAAAAGTGGTCTCACCATCCATAATCGTATCCATACCGGTGAACGACCATTTAGatgCGGTGGTTGCGGAAAAGGCTTCATTAGAAGTTTTGGTTTAACACAACATCGACGAACACACAAAGCTtgtatttctataaaaactCAGTCTGCTATCGAAACAACGGAAACTGAACCAGTACTCATGAACGATATTAACGAATTTTAG
- Protein Sequence
- MDNTNGVEVIIEDLSNHPKCPHGPTLLFSRSVNCSGRVRRRFYACAACRDRKDCSFFLWEDQIDKVTFKKEVVKVEKQKLVSDINHKELYQKFHKLLQQPPNRRYYCHNCNILLTDKISHGSHQIISPLSDHLLQNPTKFLKPKENSKKEAQYLFAESSTKVIIDTIKHLNLRNILCIGTPRIHEYIKNNGETYKMNSLLLDFDERFHNFFGPLEFCWYNSFNHHFFGGTAAKNVFEEFLQSENGKHSCIIMDPPFGGRIEPLAHSLRLINTRYQQLNKTKNSIPTLWIFPYFMEPQILNSLPDFIMLDYKVDYDNHSLFSNKSKGRKYGSPVRMFTNISASQIPFPTEEGYRYCKACKRWVSSENKHCNICNCCASKDGRTYKHCNVCSRCVKPSWQHCDKCERCCLPTHKCGEFIPSTDCFHCKQHGHKKNQCPNLNTSSRKRRNISESETVDKNNMKKMQIVRKVDSRNVDSFHTCSVCSKSFSKLNSLNRHMKKHKITESDTDTSSCSDNQADVSNDVHIKDENESEEENHNPNFHSDITDKENNGITKNSTDVENLKTIKTEEDTQATVENRMKPKNKKNTNYFCKKCDKSYKKLAYYNKHLHTHISKKTDDSKELTADDFLCVKSKLDRNVDNVKRDLNNYSNENIDVKKEEIAGQSKGRITKKKIVSTKVKRCRLKEYPCPKCPMKYKNEVWFISHLKTHSEIKSHNCSICDETISFEMFEQHMATHIGETHICTICGTHFRWASGLKTHMRQHNNYKPFLCSTCGKGFTLNRYLEQHLRSHTQERPHVCSYCHKGFIHKSNLVEHLRTHTGVKPHVCTVCGKTFAHYSGLTQHHRVHTGVRKHLCNICGRLFRTGDKLRDHARTHSGERPFVCAECGKTFTNKSGLTIHNRIHTGERPFRCGGCGKGFIRSFGLTQHRRTHKACISIKTQSAIETTETEPVLMNDINEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531311;
- 90% Identity
- -
- 80% Identity
- -