Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: PRDM10
Assembly: GCA_034508555.1
Location: JAVRKA010000029.1:1912556-1926177[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00017 0.0046 17.9 0.2 2 23 540 561 539 561 0.96

2 12 0.24 6.6 8.0 0.3 3 23 651 671 650 671 0.97

3 12 0.018 0.5 11.5 0.3 2 23 692 713 691 713 0.94

4 12 4.8e-05 0.0013 19.6 2.0 1 23 735 757 735 757 0.98

5 12 0.23 6.2 8.0 3.9 2 23 766 787 765 787 0.97

6 12 1.1 32 5.8 2.7 1 23 793 815 793 815 0.92

7 12 0.00054 0.015 16.3 1.5 1 23 821 844 821 844 0.97

8 12 0.023 0.63 11.2 6.3 1 23 849 871 849 871 0.97

9 12 0.00011 0.003 18.5 4.3 1 23 877 900 877 900 0.95

10 12 0.009 0.25 12.4 2.0 1 23 944 967 944 967 0.97

11 12 0.00028 0.0078 17.2 2.3 1 23 989 1012 989 1012 0.97

12 12 0.02 0.56 11.3 5.5 1 23 1049 1072 1049 1072 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00017	0.0046	17.9	0.2	2	23	540	561	539	561	0.96
2	12	0.24	6.6	8.0	0.3	3	23	651	671	650	671	0.97
3	12	0.018	0.5	11.5	0.3	2	23	692	713	691	713	0.94
4	12	4.8e-05	0.0013	19.6	2.0	1	23	735	757	735	757	0.98
5	12	0.23	6.2	8.0	3.9	2	23	766	787	765	787	0.97
6	12	1.1	32	5.8	2.7	1	23	793	815	793	815	0.92
7	12	0.00054	0.015	16.3	1.5	1	23	821	844	821	844	0.97
8	12	0.023	0.63	11.2	6.3	1	23	849	871	849	871	0.97
9	12	0.00011	0.003	18.5	4.3	1	23	877	900	877	900	0.95
10	12	0.009	0.25	12.4	2.0	1	23	944	967	944	967	0.97
11	12	0.00028	0.0078	17.2	2.3	1	23	989	1012	989	1012	0.97
12	12	0.02	0.56	11.3	5.5	1	23	1049	1072	1049	1072	0.96

Sequence Information

Coding Sequence: ATGATGGAAAGCGGGAGTCATGGAACGAATTCTAAAGGTGTTGGGCTTCCACTATCAACCGTACCACCCGTTACTCTAACCGATACCGATGTGCCGATATGGCTTCCGGATAGAATGCCTAATTCAACTGTAGGCATTGCCAACAATTCTCAGTTACTATTCATAGCGGTCGAGTATGTGGATGATGCAAATATAGATTACTCAACTTTGGACAGCGACACTATCAAGCAATCCCAATATGTCGAATCGCTTGATAGCAACACGGTTAGCCCTCTCGACCCAAACATGAGCTCGGCTGCAAGATATTCTCCTGTCTATAATATGGCCGATGGGGAAACCAACCTGCCTTCAGAAGAAAATGATGTTCATCAACAAACAGCACTTCAAAACTCTATTTTGGTTGTACCGAATGGCATTACGCCTTCGAACATAAACGGAACAAATGGGCTTCCATTAAATTCTGTTGaagggAACATAGATCTTCTGCGTCAAGTCGTTTCCAGCCGTTTATGCCGACAGCTAGACCCGAGCATTTTGGAAACGGATTTAAAGAACGAAAATATACCCGTCGAATTATTGATAACTAACCAAAATACAGGCATATCTTATGCACTATCATCGGATAACTTATCGGGAGACGCCAATGAATTGAATGGAATTCTAGGTTCGCTTGAACAAAATGTTCGAGAGAAACTTATCGATCAACAAAACGTAGTTTTGGATTCCAACCAACTAATTTCGCTTGACGATCACGTCTTGATGGATAATGGAACATTGGTATTGAAAACCGAACTCGGAGCCGATGAAATGGGGCATGTGGTTAACGATATTGACATAGAACTCGCTAATACTATTACTGAGGATTACAGAGCAAACGGCAGTGAAGAAACGATTTTGAGCGACACGATTCTTAATGCAGACGAGCCGGTGATGGAAAATCATACAGATATGGATATCGGTGTTCGAAGATCGGTTAGACGGTGTTTTGACAGAGACTTGGATGATGACGAAATAGATTTAAtgaTAGATTGTCCGGATTGCATAGCTAGGAGTGAGGCAATTGTCAATGGCCTTTCTGATGATGTTGCATTCTGCCATCGGCACCAACAGCATTCAATACTTAAGACAATTAGTGACAAACCAGTACCAACGAGGGCATACGCAACTTTACCTGCAGCTTATCTTTCGATCGGTAAAGTTACGGGAATAACCGATCCAGAGTCTTGTCTCTCGGTTTTTGGAGTGTTTGCGAAAAGATTTATACCGAAACGCACACAGTTTGGACCTGTTGAAGGAGTGCTTGTCGAAGACAGTGAAAATGTAACAAGAAAACATTATGtcgaattaatattggaaagtGATACTGGTCAGATGAAACAATTAGATGTAAGCAATGAAAACACATCGAATTGGATGCGTTTTGTACGAGCTGCAACTTCTCAACATCAACAGAATCTGGTGCTGAATCAAATGGGTCCATCTTTATACTATACGACAATTTGTAACATACTTCCCCGTCAAGAACTGCTAGTAGGTTATGGTCCAAGTTACGCTTCAAAACGGGGCTTGAAACCATTGCCTCCAATAGACGATTTTCAACAGATTAGTGATAGCTGGCCTTGCTTTGAATGTAACATGATGTTCAACTCATCAGAAGAATTACAAAAACATTTGAATGTTCATGATAAAGAAAAGGATGAAATTAAAAAAGCTAAACCCAAACGACGGGTGAAACGCAGGCCTGCAATAATTAAACGTCTGGTAAAACACAACACCTGTGATAAGAAACCGGATCCGCTGTACATAGATGAAAACGAAAAGGATTcagatgaaacaaaaaaatctgaaatgtaCAACAACAACCAGACAGACAGCAATGAAAATGATCCCGAACTAAAAGAGGGATTGTGGACTATCAGTGAAATTATGAAACGAGCAGAGTTGTGGTTATGTTCAGACTGCAATCTGAAGTTCAGTCTACTGGCTACATTCGAACTGCACGTTCTTTCTCACCAACTGGACTTGCTTGAAGAGTTGACACCACCAGCCGCGGCGGCCAGCGAACTACTAGTTTCGTGTCCACAGTGCGACGAAAGGTTTACGACCCATTTGGCCCTTGTTGAACACGTATCGCAGCATGCTGTCAGCAGCTGTGAGCAGATCGAGACCGAAGAGAAAAGGAATAATAGCAACCGTAAAGCTCACAAATGTAACATGTGCTATAAATCGTTCGCTTCTGCTGAACGATTGCagCGTCATATGCTCGTTCACGGCTCTGAAGAATCTAAACCTATGCAGTGCACAGTGTGCAAGAAACGATTTTTGAATAATTCAGCGCTGACTTGTCATCTGAAAACGCATAATGACAATCGTGAATTTCATTGCCCTATTTGTAACATGACGTTCGAACAAGTTTTGATGCACAAGGAACATGTTAGAACTCATTCAGAAAATGGTGTTTACACTTGTCCATACTGCAACAAGttattcaaaGAGTACAGCATGATCCGTAAACATATCCGTGCATTCCATTGCGACCGTAAATACTGCTGTCAGCACTGCGATAAGCCATGCCCCACTCTGGATAAGTTACGAATGCATCTGTTGAAGCATTCCGATCATCGTGAATTCTTATGCGCTCATTGTGGGAAGCAGTTTAAACGAAAAGACAAGTTGAAAGAACATACCAGACGAATGCACGATCCTTTACAAAATGGAATAATGGACGGAATTGTGAAGCGACAGTCAAAGCAGGATAATAAATCAATGTcacagaaacaaaaaaaatttacaccgAAAGTGTCGCCGACCGATTATCATcggtttatttataaatgtcaCACGTGTTTACTCGGTTTTAAACGACGCGGAATGCTCGTCAACCATTTAGCAAAACGGCATCCCGATATACGTCCCGACTCGGTACCGGAATTGAACTTACCGATTTTACGAACGACTAGAGATTACTATTGTCAGTATTGCGATAAAGTTTATAAAAGTAGTTCGAAACGCAAGGCGCACATTCTAAAAAATCATCCCGGGCTACAGTTACCGTCAAGTAACCGAGTTAAGGAATCAGATCTAAACAATGGAGTGCTGAATCAAACGTTTTCGCAAACCGTCGGAAGCGTCACGACTAATCCTCATAATTGTCAGTGGTGCCACAAACAATACGCGAGCAAGGCAAAGCTGTTGCAGcatcaaagaaaaaaacatgAAGACTTGGTTCAGCAGCAGAAGGCAGCTGAACAAAAAACGAAGGAAGATAAAGTGAAGGCCAACGGCATCATTCTCGAGGATAGGAAGATCGTTGAACAGTTGCCGCCCGATGTAATGTCGGATAACAATGATCCTGATGAACCTGAGTTGCCCCAATACGAACAATTCAATACAGTGATTCTAGACGATAAATCTGATCTCAAGGTTTCCTCTCAGTCCCTCTCAAATGAGTTCTTATCCAAAGCAGTCACCGAACTGAATGTCAGTCAGTATTTTCGCATAGTTCCTACGACAGTTCAGCAACAAACAACGGAAAATCAAGCCGGATTAGATGTCGGATCTCCGATGAGTAGTGCTACCGCCGACGAAGCCGTATTACGATGTTTGCTACCTCGAATGGATCGTATTGAAGCCGGCCAATTGGCGGACCAAGTGACCGAAATCGGTACGCCGCGTGCAACGCAAATCGATCAAATTGACACGATGACCATTCCTCACGTTTGGTCGAAAGCAGTACCGTATGCCCCGTATATACAACGCTGA
Protein Sequence: MMESGSHGTNSKGVGLPLSTVPPVTLTDTDVPIWLPDRMPNSTVGIANNSQLLFIAVEYVDDANIDYSTLDSDTIKQSQYVESLDSNTVSPLDPNMSSAARYSPVYNMADGETNLPSEENDVHQQTALQNSILVVPNGITPSNINGTNGLPLNSVEGNIDLLRQVVSSRLCRQLDPSILETDLKNENIPVELLITNQNTGISYALSSDNLSGDANELNGILGSLEQNVREKLIDQQNVVLDSNQLISLDDHVLMDNGTLVLKTELGADEMGHVVNDIDIELANTITEDYRANGSEETILSDTILNADEPVMENHTDMDIGVRRSVRRCFDRDLDDDEIDLMIDCPDCIARSEAIVNGLSDDVAFCHRHQQHSILKTISDKPVPTRAYATLPAAYLSIGKVTGITDPESCLSVFGVFAKRFIPKRTQFGPVEGVLVEDSENVTRKHYVELILESDTGQMKQLDVSNENTSNWMRFVRAATSQHQQNLVLNQMGPSLYYTTICNILPRQELLVGYGPSYASKRGLKPLPPIDDFQQISDSWPCFECNMMFNSSEELQKHLNVHDKEKDEIKKAKPKRRVKRRPAIIKRLVKHNTCDKKPDPLYIDENEKDSDETKKSEMYNNNQTDSNENDPELKEGLWTISEIMKRAELWLCSDCNLKFSLLATFELHVLSHQLDLLEELTPPAAAASELLVSCPQCDERFTTHLALVEHVSQHAVSSCEQIETEEKRNNSNRKAHKCNMCYKSFASAERLQRHMLVHGSEESKPMQCTVCKKRFLNNSALTCHLKTHNDNREFHCPICNMTFEQVLMHKEHVRTHSENGVYTCPYCNKLFKEYSMIRKHIRAFHCDRKYCCQHCDKPCPTLDKLRMHLLKHSDHREFLCAHCGKQFKRKDKLKEHTRRMHDPLQNGIMDGIVKRQSKQDNKSMSQKQKKFTPKVSPTDYHRFIYKCHTCLLGFKRRGMLVNHLAKRHPDIRPDSVPELNLPILRTTRDYYCQYCDKVYKSSSKRKAHILKNHPGLQLPSSNRVKESDLNNGVLNQTFSQTVGSVTTNPHNCQWCHKQYASKAKLLQHQRKKHEDLVQQQKAAEQKTKEDKVKANGIILEDRKIVEQLPPDVMSDNNDPDEPELPQYEQFNTVILDDKSDLKVSSQSLSNEFLSKAVTELNVSQYFRIVPTTVQQQTTENQAGLDVGSPMSSATADEAVLRCLLPRMDRIEAGQLADQVTEIGTPRATQIDQIDTMTIPHVWSKAVPYAPYIQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01531208;
90% Identity: iTF_01531208;
80% Identity: -