Vnig004213.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000007.1:10518965-10527291[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0017 0.046 14.7 5.1 1 23 135 157 135 157 0.98 2 8 7.2 2e+02 3.3 0.6 1 9 163 171 163 171 0.90 3 8 3.9e-05 0.0011 19.9 2.8 1 23 265 288 265 288 0.98 4 8 0.00099 0.027 15.5 0.1 3 23 301 321 300 321 0.99 5 8 4.5e-06 0.00012 22.8 2.8 1 23 327 349 327 349 0.99 6 8 0.0037 0.1 13.7 1.8 1 23 355 377 355 377 0.98 7 8 4.1e-06 0.00011 23.0 0.5 1 23 383 406 383 406 0.97 8 8 4.6e-06 0.00013 22.8 0.2 2 21 413 432 412 433 0.95
Sequence Information
- Coding Sequence
- ATGAATTCAATTTCTGATAGTAAGATTAATTTAAACGACGGTTTACCAACTCATATATGTGAAGATTGTTTATCTAatgtagaaaaattttatacttttaaaaaacaatcgGAAAGATcgtattatttactaaaagaaaTCCAAAATAAGTATGTTCAACACCAACTAGAGTCGTACGGCTTAGCAGAAAATTgtgctataaaaaaaatcaaagattatgtggaagaaaaaaacgaagtagttattaaaaatgaagacATAAAACAGGAATGTTGTAATGACAGTGACGATATTGGTGCTTTGGATATCGAGAATACGAAATTAGAAACCGATGTTGGAGTTAATATTGTAAATAGTGAAGTTTTTGatacaaatatatatgaaaaaagagGTGAACGTCCATTCAAATGTTCGTTGTGCAGCAAGTCGTACCGAATAAAGAAAAGTCTAACATCGCATATGCATAATCATACCGGAGAACGACCATTTGAATGTTCGATTTGCCACAAGAGaaACAAATGCGTAGAGTCCGACCGTTTACTGAAAGAAGCACAGAAAGAGCATATTCGACAACAATCGAATGAGGAAAAAGAAATCGATAAGATATACgaggaaaataatgatattGAAAAACATCTAAACGACGAAACAAAAGAAGACGATGATTCTAATGATTCTTGGCGAAACAGTGAAAATGTACCGGTTGTTCCCGCTTCTCCAGAATCAAAATCTGATAGTAGTGTTATGAACATAAAGGGTCATATGTTGTTAAAACACGCAACAGTTCGCCCATATAAATGTCCGAAGTGCGAAATGACATTCTCGAAAGAATACTTTTTGAAAACACATCTCAAAACAAGTCACATTGAAAATACTAAAGCGCGCGTTTATAAAGAACTGTGTCCTGTCTGCGGTCAAAATCAAATAAGCTCGTCGGCACTTCGAATTCACATGCGTACACATACAGGTGAACGTCCATATACTTGTACATTGTGTAATAAATCATACGTAACGAAAAGTACTTTGAGTCTTCACCAACGTAAACATACCGGTGAAAAGCCATTCGAATGTTTAACTTGTCACAAAAGATATGCTACAAAAGCAATTCTCCAAAAACATCAACTTATTCATACGGGGGAGAAGCCCTATCAGTGTGATATATGCGAGCAAGCTTTTAATCAGAAATCGACTCTCACAACACACTTGAAACTTGTTCATATGGGTGAAAAACGTAATCAATGTACTGTTTGTGGAGAGACATTCACTACAAAAACATTGCTTACCGCTCACATGAAGATCGGATGTGCTTTGTAA
- Protein Sequence
- MNSISDSKINLNDGLPTHICEDCLSNVEKFYTFKKQSERSYYLLKEIQNKYVQHQLESYGLAENCAIKKIKDYVEEKNEVVIKNEDIKQECCNDSDDIGALDIENTKLETDVGVNIVNSEVFDTNIYEKRGERPFKCSLCSKSYRIKKSLTSHMHNHTGERPFECSICHKRNKCVESDRLLKEAQKEHIRQQSNEEKEIDKIYEENNDIEKHLNDETKEDDDSNDSWRNSENVPVVPASPESKSDSSVMNIKGHMLLKHATVRPYKCPKCEMTFSKEYFLKTHLKTSHIENTKARVYKELCPVCGQNQISSSALRIHMRTHTGERPYTCTLCNKSYVTKSTLSLHQRKHTGEKPFECLTCHKRYATKAILQKHQLIHTGEKPYQCDICEQAFNQKSTLTTHLKLVHMGEKRNQCTVCGETFTTKTLLTAHMKIGCAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -