Vnig017921.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000074.1:1317543-1321300[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00082 0.022 15.7 0.1 2 23 311 332 310 332 0.96 2 11 0.0035 0.097 13.7 0.4 1 23 382 405 382 405 0.97 3 11 1.7 48 5.2 0.2 2 23 409 431 408 431 0.86 4 11 0.023 0.62 11.2 4.2 3 23 438 458 438 458 0.93 5 11 0.34 9.3 7.5 6.9 1 23 464 486 464 486 0.97 6 11 0.00014 0.0039 18.1 0.5 1 23 492 514 492 514 0.96 7 11 0.00018 0.005 17.8 1.2 2 23 522 543 521 543 0.97 8 11 0.0002 0.0056 17.6 0.8 2 23 550 571 549 571 0.95 9 11 0.0033 0.09 13.8 0.2 1 23 577 599 577 599 0.98 10 11 6.2e-05 0.0017 19.2 1.0 1 23 605 627 605 627 0.96 11 11 0.00049 0.013 16.4 2.5 1 23 633 655 633 655 0.99
Sequence Information
- Coding Sequence
- atGGAAGAAAACAGTGTAGTTACATTAAACCTAAGTGAAGTATGCAGGCTGTGTTTGGGTGGTGATTTTGAAATGTCGGAGATTTTTGATGAAGACAGCTTAAAAGAAGAAGTGACTTTGGCAGAACGAATTTATAAAATGGGTTGTGTAAAAATTTGCGTCGATGACGGATTACCACAAATGATTTGTTTGGTGTGTAGAACAAAAATTAACGAAGCTTATGAGTTTCGCCTTCAAATGTTGGAAACTGACTCCCTGTTACGACAATGCATCTATCCAGATTTAATTGTTGAAAAAACAAACGACGACGAAACGTATTGTAAAAGTATTGACAAATCACATTTTAACAACGATTTTTGCAGCAGTGAGAAAGAAGACGACAATGCAGATATGAAATTACTTTACGTGGAAGAAGACGGCACTCAAGTATTTACTCTTAAAGACGAAAATATGGAATATACTGTTGAAGTTTTGCCGGTCAATAAAGACAGTGATGAAAAGAATGTCTTGAAAAGAAACTCAGATCACGACTGcgatgttgtaataataaataaaaaacaaaaattaaataataatgccAATAAAGACACCGTCGTGCCTTTAAAAATTGCGAAGAAATTGGCAAAACACGGAGTTCTCACACAAAAATTTAACGTATCGACTTCTTCTGAAGATGCCGATAAAAACGACGATGAAAGATACTTATCAGGCGATCATAAAGAAATAATCGAAACATTAGAAGATATACGACAAGCAGATTTAAACGATTCTTGTGAAATAAAAACAGTCGACGCTTCcgagatattttcaaaaaaagaatcTGTCATACCAGCTATCCCGAAAAATGCATCTGGAGctaaagagaataaaaaatcagCCGTCAAGAAAAAAACAAGCCAGGATCAAAGTAATGGGCAGCAAGTAAATTTGAGTTGCCAGTTGTGTCTGAAACCGTTCACAGACTACGAATTATTGCGCGTTCATATTATCACTCATTTCGAGGGTTACAATCCATACGATCCTCTTTCGGACGACGACGCCGACGACCCCGACAGCGACAAGACTCACTGTAAATATTGCAGACTTAAATTACCGAACGAACAGCTGCCATTGCACATAATGCAAGAACACAAAGACGAGACGTTCGTTTGCACCCAGTGCAACGGCACGTTCGATTCCGAGCAAGAACTCAAAGAACACATCTCAAAGAACCATTATATGTTGCAGTGTAACGTATGCGATCAGAAATTTCTAGCGTACTTAGACTTGCAGAGCCATCTGTCGGTTAAACATTACAACGGTCAGTACTGGTGTCAACCTTGTTCGAAACGGTTCACTCAAAAGCACGATTTCATCCTCCATCAGCGTCGACATCTGGGAATCAAACCGTTTTCGTGCCTGCATTGCAACAAAAGGTTCGTCACTTCGACGTTATGCAAGGAGCACGAAAGGAGACATGAATTGAGTAAACCTTATCTGTGCGGTTTTTGCGGCAAAGGCTACGTCAGACAGAGCGAATTAAAATACCACGAACAGACGCATACGATCGATGCGACGAGCGTTTCGTGCGAGGTCTGCGATAAGACGTTCACGAGCGTGTCGAGCTATCGTTTGCACAAGAAGCGCCACGAACTCGGTTGCCGGTGCATCTGCAGAGTTTGTGGCAAAGCTTATTACACCAATGCTGAATTAAAAAGGCACGAACAAATACATTTGGGTGTCCGGAAGTATCCGTGTTCGCTTTGCGGGAACTCGTTCCTTTCGCAGCCCGAACTGAATAGGCACTTGAATTATCATCgaggagagaaaaaatatttgtgtaagGAGTGCGGTAAAGCGTATTATGAAAGCGGACATCTGAGAATTCATGAACGGACGCATTTGGGGGTGAAACCGTTTAAGTGTCAGATTTGCGCGAAATGTTTCGTGGCCAGACCGAAATTGATGAGGCATCTGAAGACGCATAAAAATAGAGTCGAACAAGCTAGTGATCAAAAATCGGCGGCGTTAGTTGAAGAAGTGACGGGAATCGAGAAGTCCAATCGAGATGAAAATGTTGATAAGAACGTGTTAGCGAATATAGTCGCGAATTATAACGGCGAAGAAATGAAAATGGAAAACATTGTAGTCGATGTGGCGGGCAACGTCATTGAAATGAGCGAATCTCGATTAGTCGAAATGGCTAACGGCAACATTATCATAATGGAAAATGGCGAGGCTATCGAAACTATAACGAATGAAAACGGTTTATTATCTATGCAAAACAACATCAAGATCGAAATTATAGACTCGGTTAATTAG
- Protein Sequence
- MEENSVVTLNLSEVCRLCLGGDFEMSEIFDEDSLKEEVTLAERIYKMGCVKICVDDGLPQMICLVCRTKINEAYEFRLQMLETDSLLRQCIYPDLIVEKTNDDETYCKSIDKSHFNNDFCSSEKEDDNADMKLLYVEEDGTQVFTLKDENMEYTVEVLPVNKDSDEKNVLKRNSDHDCDVVIINKKQKLNNNANKDTVVPLKIAKKLAKHGVLTQKFNVSTSSEDADKNDDERYLSGDHKEIIETLEDIRQADLNDSCEIKTVDASEIFSKKESVIPAIPKNASGAKENKKSAVKKKTSQDQSNGQQVNLSCQLCLKPFTDYELLRVHIITHFEGYNPYDPLSDDDADDPDSDKTHCKYCRLKLPNEQLPLHIMQEHKDETFVCTQCNGTFDSEQELKEHISKNHYMLQCNVCDQKFLAYLDLQSHLSVKHYNGQYWCQPCSKRFTQKHDFILHQRRHLGIKPFSCLHCNKRFVTSTLCKEHERRHELSKPYLCGFCGKGYVRQSELKYHEQTHTIDATSVSCEVCDKTFTSVSSYRLHKKRHELGCRCICRVCGKAYYTNAELKRHEQIHLGVRKYPCSLCGNSFLSQPELNRHLNYHRGEKKYLCKECGKAYYESGHLRIHERTHLGVKPFKCQICAKCFVARPKLMRHLKTHKNRVEQASDQKSAALVEEVTGIEKSNRDENVDKNVLANIVANYNGEEMKMENIVVDVAGNVIEMSESRLVEMANGNIIIMENGEAIETITNENGLLSMQNNIKIEIIDSVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531204;
- 90% Identity
- -
- 80% Identity
- -