Vnig014704.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000047.1:367051-372841[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00017 0.0047 17.8 0.5 1 23 968 990 968 990 0.97 2 11 0.034 0.93 10.6 0.5 1 23 998 1020 998 1020 0.98 3 11 0.032 0.87 10.7 2.5 1 23 1047 1069 1047 1069 0.98 4 11 0.00085 0.023 15.7 1.9 1 23 1073 1095 1073 1095 0.98 5 11 0.0011 0.031 15.3 1.2 1 23 1161 1183 1161 1183 0.94 6 11 0.00024 0.0066 17.4 0.5 2 23 1187 1208 1187 1208 0.98 7 11 0.00088 0.024 15.6 0.5 2 23 1243 1264 1242 1264 0.97 8 11 0.00062 0.017 16.1 0.3 2 23 1274 1295 1273 1295 0.97 9 11 0.00091 0.025 15.6 4.7 1 23 1466 1488 1466 1488 0.98 10 11 0.00017 0.0045 17.9 0.4 2 23 1493 1514 1492 1514 0.97 11 11 0.038 1 10.5 5.1 1 20 1519 1538 1519 1543 0.92
Sequence Information
- Coding Sequence
- atggaAGACGGAATAACCAATGTATATTATATGGATGATTCCCAAGTTATTGTGGAAAACGCAGGCGACGCGGTTGAAACCGATGGTGTAGTATGGCATGATGATTACACAGAAGTTGTAGAATATCatgaaaataacatttcattAGGCACAAGCATTACCGAATATGAAACTGCTACCGAAGACGATAGTACATTGTACTATTCTACGGTCGATACGACTTTAGCTAATGATGAGGTAGACAACGAACCTTTCGTTAATAAAACTGATAGTGATGAAGTTCGTAACGTAACCGTTATTACTTACGAGTCGCACGATAACGAAAGTATTTTACCTCACGTTTCGGAAGAAGCCGAACGCCCAGTAGAAGAAACTGATCCGGAGAATAACGGTGAAGTTATCACCGTTGGCGAGGATGAGGTAATGCTGTACCAGATCGAAGGGTCTGAGGACCTTTACGCCGTTCAAATTGCTGACGATGGTCAAGGAAATTTACAGAAATATCAATACAAAGTTAGAGAAACAGAAGATGGACAATTGGAGGCCGTTCCAGGAACCATTCAGCTGCAGACTGTTAATGAAAGTCCAGAAAGTTCTCAAAACAGAAACGATAATGCAGCTGTTTATCAAGAGATTGATACAAattcaatgataaaaattgaaaatgaagaGATGAGACTAGATGTTGAATCAACGTCTCTAGACAAGAACGTTTTACGCGAAAATAATTCTAATAACAGCAATGATTCAGAAGAAGTGACAACTGATGAACAAACAAATTTAGAAACTGAAACATTGTCGACTTCGAATAAACAAACTTTTGAAGAAGTATATATGGATCGTACCCAAGAAATTGGCTTGACTTTTCAAAATAACGATTGTGTAATTGATAGAGAATATTTAGAAGAGTCAGTTCCACCACAAGAAGCCATGCACAACTGTATTGAACTTTCCAAGTACATGCACGCCGAACAGATTACTCAAGACGAATCCGACGATATGACCGAACCTACTGAGAATGTTGATTCGCAGGTTGAAACGTTCAATGAAATCGGTTGTGAAACTGAAAAGAACAACGAAATTActttgcaaattgaaaattatgtcGATACACCCAACGACGTGTGCACTTCCAGAATTGAAGACAACGTTGCACAAATTGagaataatgataatgtgaatcaACAGGATTCGAGTGAAGAATATACTGAGGAAATGGAAACAATTGAAGAAGTGGAATCGAATTCAATATTGGTACAACAAAAGACTGAGAAACAATATGCCGAAGGAAGTCAGGTTCATGTGTTAGCCGATGTTGTAATACCGAGAAAAGTAATTGAAAAGCCGATGCCACCGAAAAGTACAATAAAATACAGTCTAGCCAGTCATGTTCAAAAGAGaatgaaacaaaatttgaaacagGAATGTGGTATGTCAGtgtctgaaaataaattcagttttgaaccaaagtttcaaaaaatgtcaaaaaatgtgcCCGTTTATAACAAAGTGTGTAAAAAAGATGAAAGTGTAACACTTTTGATTGTGAATCCAACATCGAATATCAAATCAAAAGAAACAGTTTCAACAACAACAAAGCCTAAAATCGATTTACTTTCAAAAACAGAGAACAGAAATCCTAGAAGCCTTCTGAGACTAAATAATCTTTCGAAAAAGGAACCCATTGTTCTTAACAAAATGCAAACTATTGATACAAGCGGTAAGACCAAAATTCACAGAGAGGATGTTACgtcctataatttaaatatatcgtCGTCAAATGAAGTCAAATGTAGACAACCGAGAAAACAAACCATCAAACCGGTTGAAAGAGGCGATTCTGAAATAACATTCCACATTGATCAGAAACCCcccgataataataatattgaaacatttGACTTGAGCGATGAAGAATGTGAACCCAAACGTAAACaaagaaagaaaagaaaaaatgtatttgtagaAAAAGTTCCCAAGAAACGAGGGAGAAAACCTGTCATTGTTATAAGTGATAGCAGTGAAGCAGAAAGTAACGACAATGAAACAGAAATAACAGACGATGTGCAAATTGACAAGATGGAAAAAAAATctccaaaaaaaataagacacgTCGctaagaataaaaattttaaaaaaaaggtggaAGACGTAAAAAATgacttgaaaaatttttttgggtttAGTAGTGGCAGTGACTCAGAGGAGGAATCAATTACGCCACAAGCtgacaatgaaaataataaagcaCCTGTAGAAGAGAATCGTGAATTATCAGGCGAAGAAAAAGATGATAATCCgcaaataaagaaaattgaaaatttgttggAGAACGAGAAGACcgttttaacagaaaaaaacgaTATGCCAAATATGCAAAATGAATCAAAACTAGATCAGGCTTCATTAAAGAACGGCAGTAATAATAGCCAAGATTTGCAAACAGTAACTGATAATGAACAATCACAGAATTCGGTGGAAGTGACTGATGAAAGATCTGATATAGTTTTCACTGAAATGAAGGAAATTCATGGAGCTATTAGTGATTCGTCGATTCTAGACAATGCGATTTGTAAGAGTTCTGAAAATTTACAATGCACAGCTGAGCTTTTGTTAGACTTAGAAAACAGcccagaaaataaaaaaccaaagaTAAAGTCTTCCCAGCAAGATGATTCTCAGAATACTGTGGAAAAATTAAACGATCAGAAACGTACTGATTTAGATACGTCTGTTACTTgtgaaaatacaaaagaaaataaaagtccAAAAAAGTCTGAAATAACTGACAAtgagaaaacaaaaaacaataaacttgaaaatatcgaaacaatacaatataaaaaactgCCCGAAGTGAAAAACTCTAAGCTCGAAACAAAATCGaaattaagtaataaatttGCTTGTCCGCATTGTCCGAAAACGTTCACAATTCCAGTTGCGTTCAAAATGCATGTTCGATCTCATGGAAACAAAGataaaatttcgttcaaatGCGATGTTTGTCCCAAAGTGTTTTTACTAAGAAGTGCATTTGTGTTGCACAAACGATCGCACGGCCGTGCAGACATCGTTAAAAATCACAAAGTCGGAAGGGAAAAACTCATCGATAAGAAAAACGTCGATTCGAATAATTTCAAATGTGAGAAATGCCCGGAAACATTCCTGACCTGTACCTCTTTAAATGTTCACAAAAACGTacacaaaaagatttataaatgcaatatctgttttcaaaaatttataaataaatcaaaactaaTTTTACATTCACGGGAACACATAaagaataatttgttaaaaattgtaacTGAGGATGCTTCAAAGCGTAATCTGCGACGAAGCActcaaaataaaactgaattcagtaaaataatacaaaatatagagAATAGTGACAAAAAGAGACGATCGAGTCAAAATATGAAGAAAGAAGATACTGAAACAACTTCCTCAACATCATCTTCCCCTGATTTGCATACTTGCAATATTTGTTCAAAATCATTTCGTCAGCTAGCCTACTTAGTTATGCATCGAGACGCTCATAATAAGCCAAAATGTCCAAATTGCGGCAAAATATTCGGTTTTAAAAATTTGCTCGATGAGCATATGAGAAGACATTGTTTGAAACAAATAGCATTGCGAAAAAGTGCCATTTCTGGAACAAATAAGCACGATTCATCAACTGCAACTCAAAAGTCGATTGTATCAGACAAGGAAATGTCTTGCGATAAATGTGATGAAAAATTCAGAAATTCCGCTGATTATTCTAATCATGTGAAAGTCCATCAGAAAACTTATcttcaaaaagaaatgaaatgcGGCGAGTGCAGTAAGTCATTTAAAAGTCCCATTGGATATTATAGTCACATTAGAATTCATAGGGCTACAAACTTGCCTGTTGGTCGAAAAAGTTTGTATAATAAAACCGAAAAGGATTCACTAGTTAGCCAAAAATCCTTGCCAAATTTGAAGAAATCCagtgaaaatgtaaaaaccgaatctatttttgttaataaaacggAAACtatcaataacaaaaaaattgaaaatgctaATTCAAAAACAAGTTCCTTTATTAGACGAAAAAGTATGTTTACGAAGCCAGATGAAATAAGCTCAACTAATAATCAAGAAAATgtaatgaaaaaatcaaacacaaTTCTTGCTAGAAAAAGTACATTCAATAAATTAGAATCGAGTATGAGAAAAGTTGAAGAAAATATGTCAAAGGATTTGAATAATAGAAAAACTATATCGAAATTAGAAGGAAATACAAAGTGTAATTTGAATgacgataaaaatgaaaatagtttcaCAAATCCGAGAACGATTTTAGTAGCTAGAAGGCAGAGTTTTCGTAGACAGATACCGAGCAATAAAGTAGTTGCATACAACTGTAGTATGTGTGATCTGAAGTTTACAACGCACACGGGTCTTTTCAAACATACAAGAACTCATGAAGattcaatCCGTTGCGAGTATTGTGACATAGTGTTCGATTCTAAGAACCTATTGAGCAGCCATCTTAAAACTCACATTTCAGTAATGTTTAATTGCGGGACATGCCATGAATGTTTCAAAAGTGATGAACATTTAATGAAACATATGGTTGAAACAAAACACGATGGCTTAAACAGTGAAGCAAAAAATGGCGATTTGGAAGCATcggctaaaaaaataaaattgccaaaaaagaaattaggaCATGGAGGTATACCATTGTCAGATAAAATGCATAAAGTATTTGCCGCTGCAAAACTTAAAACTTAA
- Protein Sequence
- MEDGITNVYYMDDSQVIVENAGDAVETDGVVWHDDYTEVVEYHENNISLGTSITEYETATEDDSTLYYSTVDTTLANDEVDNEPFVNKTDSDEVRNVTVITYESHDNESILPHVSEEAERPVEETDPENNGEVITVGEDEVMLYQIEGSEDLYAVQIADDGQGNLQKYQYKVRETEDGQLEAVPGTIQLQTVNESPESSQNRNDNAAVYQEIDTNSMIKIENEEMRLDVESTSLDKNVLRENNSNNSNDSEEVTTDEQTNLETETLSTSNKQTFEEVYMDRTQEIGLTFQNNDCVIDREYLEESVPPQEAMHNCIELSKYMHAEQITQDESDDMTEPTENVDSQVETFNEIGCETEKNNEITLQIENYVDTPNDVCTSRIEDNVAQIENNDNVNQQDSSEEYTEEMETIEEVESNSILVQQKTEKQYAEGSQVHVLADVVIPRKVIEKPMPPKSTIKYSLASHVQKRMKQNLKQECGMSVSENKFSFEPKFQKMSKNVPVYNKVCKKDESVTLLIVNPTSNIKSKETVSTTTKPKIDLLSKTENRNPRSLLRLNNLSKKEPIVLNKMQTIDTSGKTKIHREDVTSYNLNISSSNEVKCRQPRKQTIKPVERGDSEITFHIDQKPPDNNNIETFDLSDEECEPKRKQRKKRKNVFVEKVPKKRGRKPVIVISDSSEAESNDNETEITDDVQIDKMEKKSPKKIRHVAKNKNFKKKVEDVKNDLKNFFGFSSGSDSEEESITPQADNENNKAPVEENRELSGEEKDDNPQIKKIENLLENEKTVLTEKNDMPNMQNESKLDQASLKNGSNNSQDLQTVTDNEQSQNSVEVTDERSDIVFTEMKEIHGAISDSSILDNAICKSSENLQCTAELLLDLENSPENKKPKIKSSQQDDSQNTVEKLNDQKRTDLDTSVTCENTKENKSPKKSEITDNEKTKNNKLENIETIQYKKLPEVKNSKLETKSKLSNKFACPHCPKTFTIPVAFKMHVRSHGNKDKISFKCDVCPKVFLLRSAFVLHKRSHGRADIVKNHKVGREKLIDKKNVDSNNFKCEKCPETFLTCTSLNVHKNVHKKIYKCNICFQKFINKSKLILHSREHIKNNLLKIVTEDASKRNLRRSTQNKTEFSKIIQNIENSDKKRRSSQNMKKEDTETTSSTSSSPDLHTCNICSKSFRQLAYLVMHRDAHNKPKCPNCGKIFGFKNLLDEHMRRHCLKQIALRKSAISGTNKHDSSTATQKSIVSDKEMSCDKCDEKFRNSADYSNHVKVHQKTYLQKEMKCGECSKSFKSPIGYYSHIRIHRATNLPVGRKSLYNKTEKDSLVSQKSLPNLKKSSENVKTESIFVNKTETINNKKIENANSKTSSFIRRKSMFTKPDEISSTNNQENVMKKSNTILARKSTFNKLESSMRKVEENMSKDLNNRKTISKLEGNTKCNLNDDKNENSFTNPRTILVARRQSFRRQIPSNKVVAYNCSMCDLKFTTHTGLFKHTRTHEDSIRCEYCDIVFDSKNLLSSHLKTHISVMFNCGTCHECFKSDEHLMKHMVETKHDGLNSEAKNGDLEASAKKIKLPKKKLGHGGIPLSDKMHKVFAAAKLKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531016;
- 90% Identity
- -
- 80% Identity
- -