Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000039.1:1236256-1237957[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00087 0.024 15.6 1.9 3 23 135 155 133 155 0.96

2 13 0.0029 0.079 14.0 0.4 3 23 161 181 160 181 0.97

3 13 0.51 14 6.9 0.8 2 23 188 209 187 209 0.96

4 13 0.022 0.6 11.2 0.8 2 23 228 249 228 249 0.96

5 13 4.5 1.2e+02 3.9 0.4 2 23 252 273 251 275 0.82

6 13 0.033 0.9 10.7 0.4 1 23 281 303 281 303 0.98

7 13 0.071 2 9.6 0.2 3 23 310 331 308 331 0.95

8 13 0.00058 0.016 16.2 2.1 1 23 338 361 338 361 0.96

9 13 0.00034 0.0094 16.9 3.7 2 23 372 393 371 393 0.96

10 13 0.5 14 6.9 0.2 2 21 401 419 400 421 0.71

11 13 4.8e-05 0.0013 19.6 2.0 1 23 427 449 427 449 0.98

12 13 9.2e-06 0.00025 21.9 0.3 1 23 455 477 455 477 0.98

13 13 0.00031 0.0086 17.0 0.2 1 23 483 505 483 505 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00087	0.024	15.6	1.9	3	23	135	155	133	155	0.96
2	13	0.0029	0.079	14.0	0.4	3	23	161	181	160	181	0.97
3	13	0.51	14	6.9	0.8	2	23	188	209	187	209	0.96
4	13	0.022	0.6	11.2	0.8	2	23	228	249	228	249	0.96
5	13	4.5	1.2e+02	3.9	0.4	2	23	252	273	251	275	0.82
6	13	0.033	0.9	10.7	0.4	1	23	281	303	281	303	0.98
7	13	0.071	2	9.6	0.2	3	23	310	331	308	331	0.95
8	13	0.00058	0.016	16.2	2.1	1	23	338	361	338	361	0.96
9	13	0.00034	0.0094	16.9	3.7	2	23	372	393	371	393	0.96
10	13	0.5	14	6.9	0.2	2	21	401	419	400	421	0.71
11	13	4.8e-05	0.0013	19.6	2.0	1	23	427	449	427	449	0.98
12	13	9.2e-06	0.00025	21.9	0.3	1	23	455	477	455	477	0.98
13	13	0.00031	0.0086	17.0	0.2	1	23	483	505	483	505	0.98

Sequence Information

Coding Sequence: ATGTTAGTAAAGTTCACttataatttcgaaaattttcatAAGGTAGaAATTAAAATATCCGACGACTACGATATCAAAGGCTATTTAAGTGACGAAAATATTCCTGAAAATGAAGGAGCTTTACCTAATGAAAATTGCACAACTGCAGAAGAATCTCAGATCACAAAGAAGTCAGACGactttgaaaatttggattATAAATCCGATTTAACATTTGATTACGATAATGGTTTAAATGATAACGTAAGTTATTGTAGCGAATCAGATTCAAAACCTGACATAAAAACAGAAGACTTTACCGATTCAGATGAGTCAGAAAATGGcgaaccaaaaaagaaaaaacaagagaaaaaaaagactataattgctaaaaataaaaagaagaaacgtAAAATATCTCATTGTGATGTATGCAGAACCGCATTCAAAAATAAAGAAGATTTAATTAATCACCGTAAAGAGCATAGAGAAAATCCTCATTGTACGGTTTGTGAGCAGCCATTTTCAGTCTTATCTGCGCTCCTAtctcatttaaaaattcataaagatgtaacaaaattaaaatgtgacGTGTGTGAATTATTACTAGCTAATAGGAAAACATTTTTACGGCACAGAAAATTGCACGAACATAAAAGGTTACGTTCATTAATTCAGCATACATCTAGAAACGTACCAAACAGATGCGTGGTTTGCAATCAGCAGTTCATAAACTTTACTGACTTAACATCTCACGTTACCAAACACAATATGTCCtgtgatatttgtaatattacTGCAACTAGTGGTAAAATATTTGTAAGGCATATGCAGTTACATGACCACGACAATCCACGATTATATTCGTGCGGCGTTTGTTTCGACGCTTATTACACAGAAGAAGAATTACGGAAACATCGGAAAGTTCACGGAAAAAAACGATACGGATGTAAAAGATGCGGATCGACATATTCCGAATTGAAATCGTTAGCCGTTCATATCGAATCAAAACACAAATCTGACATACAAGATTACGCCTGTAAATATTGTAACAGAAAATTCATAATGAAATTACAATTACAGAATCACTTGAAATTGAGGCACGCGTCTGAAGGAAAAACAAATGAACCAATACACTGTGAAGTGTGCGACAGTACATTTCGCGCTAAAAGTCATCTGACAATACATATGAAAAAACATACCGGAGAAATGCCGAAAATAGTGTGCGACGTTTGTGGAAAACAGTATTACCGCAACGATATGCCTGTACATATGCGTTTTCATACAGGGGAAAGACCTTATAAGTGCGATTTCTGCGATAAGGCGTTTACGATCAGAGCGCACCTGAAAAGCCATCTTACTATTCACACTGGCGAGAAACCGTTTGTCTGCCATGTCTGTGGAACCGGCTATTCAAGAGCTGGAGTtcttaaaagtcatatgagaattCACACTGGTGAAAAGCCATTTGTGTGCCAGATCTGCCAGCAACCGTTTAGAGCTTTAATGGCGCTCAAAACACATATGAAAGTGCATTAA
Protein Sequence: MLVKFTYNFENFHKVEIKISDDYDIKGYLSDENIPENEGALPNENCTTAEESQITKKSDDFENLDYKSDLTFDYDNGLNDNVSYCSESDSKPDIKTEDFTDSDESENGEPKKKKQEKKKTIIAKNKKKKRKISHCDVCRTAFKNKEDLINHRKEHRENPHCTVCEQPFSVLSALLSHLKIHKDVTKLKCDVCELLLANRKTFLRHRKLHEHKRLRSLIQHTSRNVPNRCVVCNQQFINFTDLTSHVTKHNMSCDICNITATSGKIFVRHMQLHDHDNPRLYSCGVCFDAYYTEEELRKHRKVHGKKRYGCKRCGSTYSELKSLAVHIESKHKSDIQDYACKYCNRKFIMKLQLQNHLKLRHASEGKTNEPIHCEVCDSTFRAKSHLTIHMKKHTGEMPKIVCDVCGKQYYRNDMPVHMRFHTGERPYKCDFCDKAFTIRAHLKSHLTIHTGEKPFVCHVCGTGYSRAGVLKSHMRIHTGEKPFVCQICQQPFRALMALKTHMKVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01531085;
90% Identity: iTF_01531085;
80% Identity: -