Vnig007595.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000016.1:6658540-6661165[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.12 3.3 8.9 1.0 1 21 222 242 222 243 0.92 2 8 8.5e-05 0.0023 18.8 4.9 1 23 250 272 250 272 0.97 3 8 1.2e-06 3.4e-05 24.6 3.0 1 23 278 300 278 300 0.98 4 8 6.4e-06 0.00017 22.4 2.4 1 23 306 328 306 328 0.98 5 8 2e-05 0.00056 20.8 2.2 1 23 338 360 338 360 0.98 6 8 1e-05 0.00028 21.7 3.1 1 23 366 388 366 388 0.97 7 8 2.6e-05 0.00072 20.4 0.4 1 23 394 416 394 416 0.99 8 8 3.6e-05 0.00098 20.0 1.3 1 23 422 444 422 444 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATAATCCATCATTTCCAATAGAATGCGCCGAtgacgaaaaaaaaactgtatctgCGAGTGGAGAGGGCAGATATATCAAAATTGAGGACAGTAAATTTAATGTGGAAAAATTAGCTAATTTTGGCTCTAGAACCAACGAGGAAATGTCTACAAAACTGGGAATGGAAGACCAGCAAATGAGCGATGACAATTCACAAATTTCCGCAGAGTATGCTGGTAACATAGTAAAAACATTACCTGAGGAAGGCGGAAGTGAAATCGGCTGCGAAGACTCAAAAATCGGAATTGCTGACATTAAATTGGTTGAAGTCCTAGATGCCAAGTGGCAAGAAAATGAATTTGCAAATTTTGACTCAGTAGACAATGGCGTCGAGGAAATgcctttaaaaattgaaattaaggaGGAACCTATGGACAGACCGTTATTTCTAACAGATCATATTAACGACACTGTAGACGATGAAATGAGCTACGAAGATTCAAAAATCGATAATGGCCACTTCTCGGGAAACTCAGCAGGTTTGCCCTTTTCTGATGTAGGATGGTATCTTGAAACATCTGAAAGACGGAACCAAATATGTGACATTTATAAAGAGCGCTTGTCTAAATTAGACAATTTAAATACAGATAAActtatacatactggtgagaaactaCATCAGTGTGCCGCTTGCAATAAGCGTTTCATTTCGTCGGCCGTATTGAATAGTCACAAGTGTATTCGTAAAGGCGCGAAACCTCATAAATGTAATGTTTGTGAGAAGTGTTTTACAACATCGGCCAGTTTAAAAACTCATAAcatgatacatactggtgagaaacctcaTCGGTGTGAATACTGTGATAAGCGTTTCATTACATCATCAGATTTGAAAGTTCACAAGCGCATTCATACTGGGGAGAAACCTTATAAATGTGATGTTTGTGAACGGTGTTTTACTACATGGGGCAGTTTAAATAGTCATAAAATGAGTCATAAAATGGCACATACCCGCGAGAAACCACATCAGTGTGACGTCTGTAATAAACGTTACAGTGCAtcaaatgatttgaaaattcatATGCGTAggcatactggcgagaaaccttaTAAATGTAACGTTTGTGAAAAGTGCTTTACAACATCGGCCAGTTTAAAAACTCATAAcatgatacatactggtgagagaccttatcagtgtgacgtttgtaataagcgtTTCATTGCATCAACAGATTTGACAGTTCACAAACGGATTCATACAGGCGAGAAACCTTATAAATGTGATGTTTGTGAAAAGTGTTTTACAGCATGGGCCACTTTAAATACTCATAAAAtggtacatactgGGCCGGTCCTAGGCATGGGCAAACCGAGCACTTGCCCAGGCCGCCAAGTTCGGAGGGGGCAACATTTTCCAGAAAGCGTTCTTCAAGAATCGAAATACTTTTTCGAGATTATCGAAAGCGAACTTCTATACTTGCCCAGGGCGCCAAAATCGCTTGGACGGCCCTGTCCCTATGTGTCAAAGCACGACAGTTAA
- Protein Sequence
- MEDNPSFPIECADDEKKTVSASGEGRYIKIEDSKFNVEKLANFGSRTNEEMSTKLGMEDQQMSDDNSQISAEYAGNIVKTLPEEGGSEIGCEDSKIGIADIKLVEVLDAKWQENEFANFDSVDNGVEEMPLKIEIKEEPMDRPLFLTDHINDTVDDEMSYEDSKIDNGHFSGNSAGLPFSDVGWYLETSERRNQICDIYKERLSKLDNLNTDKLIHTGEKLHQCAACNKRFISSAVLNSHKCIRKGAKPHKCNVCEKCFTTSASLKTHNMIHTGEKPHRCEYCDKRFITSSDLKVHKRIHTGEKPYKCDVCERCFTTWGSLNSHKMSHKMAHTREKPHQCDVCNKRYSASNDLKIHMRRHTGEKPYKCNVCEKCFTTSASLKTHNMIHTGERPYQCDVCNKRFIASTDLTVHKRIHTGEKPYKCDVCEKCFTAWATLNTHKMVHTGPVLGMGKPSTCPGRQVRRGQHFPESVLQESKYFFEIIESELLYLPRAPKSLGRPCPYVSKHDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -