Vnig013326.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000039.1:1218601-1222328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.7 1e+02 4.2 2.1 1 23 158 180 158 180 0.96 2 20 0.013 0.35 12.0 2.6 1 23 188 210 188 210 0.98 3 20 0.43 12 7.1 0.1 1 23 216 239 216 239 0.92 4 20 0.02 0.55 11.3 1.3 2 23 247 269 246 269 0.97 5 20 0.0018 0.048 14.7 1.0 1 23 275 297 275 297 0.99 6 20 0.0019 0.052 14.6 1.4 1 23 303 325 303 325 0.98 7 20 1.8 50 5.2 0.5 2 23 334 354 333 354 0.93 8 20 5.2e-05 0.0014 19.5 0.4 1 23 358 380 358 380 0.99 9 20 0.00052 0.014 16.3 0.5 1 23 386 408 386 408 0.97 10 20 7.4e-05 0.002 19.0 1.6 1 21 414 434 414 435 0.95 11 20 0.2 5.6 8.2 0.3 2 23 555 576 554 576 0.96 12 20 0.28 7.8 7.7 4.6 1 23 584 606 584 606 0.98 13 20 0.24 6.7 7.9 3.1 1 23 612 635 612 635 0.86 14 20 0.5 14 7.0 2.5 2 23 642 664 641 664 0.94 15 20 0.0013 0.035 15.1 2.9 2 23 671 692 670 692 0.96 16 20 0.0057 0.16 13.1 1.3 1 23 695 717 695 717 0.98 17 20 0.48 13 7.0 0.2 2 23 725 745 724 745 0.90 18 20 0.00091 0.025 15.6 6.7 1 23 751 773 751 773 0.99 19 20 0.096 2.6 9.2 3.5 1 23 779 801 779 801 0.98 20 20 4.9e-06 0.00013 22.7 4.7 1 23 807 829 807 829 0.98
Sequence Information
- Coding Sequence
- ATGACTAAAGTGTGTCGAACGTGTTTAATAGAAGTTgaagatttcaaaaatgtttttacggaAGAAATTTCTGGAATGTTGAGTTGTATTACGGGCTTAATGataTCTGTTGGTGACGGATTACCCGAAATTGTTTGTTTAGATTGTACAAAGGCGATAAAAAATTTCTATGACTTTAGAGAAAAGTGTCACAAGTCTTACAAAATATTACAGTCGCTTAAAACAGAAGTTCACTATAGTGAATCTGTGAATGGAgcacaaaattttgaaaaaaataccattAAAATAGAAGAAAATGACTACGTAAGTTGTAAAAACGAGTTTCCTGATTTAGAGAATGATGAATCGAAATCTGATGATGAATATGTCGATATTTATGACGACAGtcaagtgaaaataaaaagcgAATCTGTTACAAAGAAAACCGACACTataatagagaaaaaattaacaaagaaaAACGGAGTATCACATCATTGTGATGTTTGTAGTATCATAgttgaaaattcgaaaatacTTAAAAGACATCGAGAAACTCACGACGAATTAAATCCAAGGAATTATATATGCGAACTGTGTCATGatgcattttatgaaaaatcgaaATTGATACGTCACAAACGTCGAcatgaaaatttaaagaaatataccTGCGAAAAATGTAAAGACCAATTTTACGACATCGGTGCGCTTGTCAGACATACCGAAGCCATCCACGCTGCAGATTCGCAACCAATTCAGTGTACACTTTGTAATGAATCATTTATACTCGAAAGGCAATATGATCATCATATGAAAAAGGCACACGGGGTGCTCAAAGAGTATCGATGTTTTCAGTgcaatgaaatatttactttACCGAAAATGCTTTTGAAACACGAAAACACTCACAAATATGGCAGACCGTATCCTTGTTCGTTGTGTTCAGCTGCGTTTCAGAATTCAAAGTCATTGAAACATCATTTAAAATGGCATGCTGGCGAAGGACTGCAGTATATTGTTTGTTCCTTTTGTGGCAAGCAGGTAGAGCGATATCGGATAACGAAACATATGAAAATACACGAAAAACCGTTCAAGTGTAAAATTTGCCCAAGAGCTTGTGCCGAAAAATGGGAACTGGTTAATCATATGAGAATACATACGGGAGAGAAAcgatttatttgcaatttttgtgGCGTTCGGTTTTCAGCGTCGcaaactttgaaaaaacatttgttaATTCATACGGGGGAAAAACCGCATGTTTGCACGATTTGTGGACATGCATTTAGACAACATGGAACTTTAAAAACTCATATGAAAGTAACTGTGTATGACGGATTGTCAgagtttatttgtttgaaatgtgtaaggactgtaaaaaagttttacgattttcgagaaaaatgcCACAAATCGACCGAGTTCTTACGGTCTGTTCAAAATGAAGATGAAAAACCATTGATAGCCGATCGATGTCGTGATGATAGTATTATAAAGTTAGAAGACAATACTTTTGAAAACTATGATATTAAACAAGAGTTGACTGaagattgcaaaataaaaatagatcagGATAGCGTAGAAGACGATGTGCAAAATGGCAATGACTCGGATGAAAATGTGTCTGCTGGGGAAAGCGAAGGCGTCGATGATAAAAGTGACGAGAAAACGGAGGACGTCGTTTGCaacgtttgtaaaaaacaaatcggttcacagaaaattttaaaacgtcaTATGGAAAGTCACGACACAGAAAACCCTAGAAATTTTGTTTGTGAAATATGCTTCGATGCCtttcattttaacaataaactgTTACATCATATGCGACGTCATAACAATGAAAAACGTTATAAGTGTGATAAGTGTTGTGATAAGTTTTTCCAGTTAAGTGCTTTGATTAGACATTTAAAACAAGTACACAAAACGAAAAAGAATTTGAAATGTCAAGAATGTTCCAAAGTGTTTCTTCTGCAGAGACAGTTAGATcatcatttgaaattaaaacacgGTATCTTTAAGAAAGTATCTTGCTCACAATGCAATGAAACTTTTAGCACAAATTGTGCTCTGAAACAACACGAAAATAAACATACTCAGTTTCCTTGTACGATGTGTAATTCGagattttcaacaaaatatattttaaaagcgcATTTATTGAAGCATACAGGCGACGAGAAAAAAGTCGTATGCAATATTTGTGGCAAGCAGTACGATCCTTACTATATGCCGAAACATCTGAAATTTCACGCAAATGACAAACCGTTTAAATGTTCGGTTTGTCATAAGTCATTCTTAACGAAAAGCAAACTAAGATATCACACTAGAACTCATACAGGTGAGAAACCGTACATGTGCACAGTTTGCGGCAACCATTTTACTTGCACAGCGACCTTGAAAAGTCATATGCtcatacatactggtgagaaaccattcTCGTGCAAGATTTGCGGTCGGCAATTCAGGCAGCGTTCCTGTTTAAGAACACATATGAAAATTCACAGTTCTGATTGA
- Protein Sequence
- MTKVCRTCLIEVEDFKNVFTEEISGMLSCITGLMISVGDGLPEIVCLDCTKAIKNFYDFREKCHKSYKILQSLKTEVHYSESVNGAQNFEKNTIKIEENDYVSCKNEFPDLENDESKSDDEYVDIYDDSQVKIKSESVTKKTDTIIEKKLTKKNGVSHHCDVCSIIVENSKILKRHRETHDELNPRNYICELCHDAFYEKSKLIRHKRRHENLKKYTCEKCKDQFYDIGALVRHTEAIHAADSQPIQCTLCNESFILERQYDHHMKKAHGVLKEYRCFQCNEIFTLPKMLLKHENTHKYGRPYPCSLCSAAFQNSKSLKHHLKWHAGEGLQYIVCSFCGKQVERYRITKHMKIHEKPFKCKICPRACAEKWELVNHMRIHTGEKRFICNFCGVRFSASQTLKKHLLIHTGEKPHVCTICGHAFRQHGTLKTHMKVTVYDGLSEFICLKCVRTVKKFYDFREKCHKSTEFLRSVQNEDEKPLIADRCRDDSIIKLEDNTFENYDIKQELTEDCKIKIDQDSVEDDVQNGNDSDENVSAGESEGVDDKSDEKTEDVVCNVCKKQIGSQKILKRHMESHDTENPRNFVCEICFDAFHFNNKLLHHMRRHNNEKRYKCDKCCDKFFQLSALIRHLKQVHKTKKNLKCQECSKVFLLQRQLDHHLKLKHGIFKKVSCSQCNETFSTNCALKQHENKHTQFPCTMCNSRFSTKYILKAHLLKHTGDEKKVVCNICGKQYDPYYMPKHLKFHANDKPFKCSVCHKSFLTKSKLRYHTRTHTGEKPYMCTVCGNHFTCTATLKSHMLIHTGEKPFSCKICGRQFRQRSCLRTHMKIHSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531068;
- 90% Identity
- iTF_01531068;
- 80% Identity
- -