Vnig004550.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000008.1:7682602-7689720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5e-05 0.00041 21.2 0.4 3 23 62 82 61 82 0.98 2 9 0.00021 0.0057 17.6 3.5 1 20 87 106 87 109 0.94 3 9 0.22 6 8.1 0.9 3 23 113 133 112 133 0.93 4 9 4.2e-05 0.0012 19.8 2.1 1 23 139 161 139 161 0.98 5 9 0.0014 0.038 15.0 3.1 3 23 172 192 170 192 0.95 6 9 2.3e-05 0.00063 20.6 0.7 1 23 198 220 198 220 0.98 7 9 1.2e-05 0.00033 21.5 1.1 1 23 226 248 226 248 0.96 8 9 9.2e-07 2.5e-05 25.0 2.2 1 23 254 276 254 276 0.98 9 9 3.4e-05 0.00094 20.1 2.1 1 23 282 304 282 304 0.98
Sequence Information
- Coding Sequence
- ATGCTTGTGGAAATTGCTTCCGTACAGACTCACGAAAATGACTCGAATAGTAGCAGCAATAACGAAGCAAACGATGACAAAGATTACAAAACCGATTCTGATAACGACTACACAGACAACTGTACAGAAAGTGAGAAATGGTTAGACGAACAGTCGGCACAGAAGAAATCGCGTACgagagattgtaaaatatgcggAGAGTCGTTTACAAAAACTGAAAACTTCGCTATTCACATGACTACTCACGTCGGTTCTCAGTTTCAATGTACTATATGTACGCGGTATTTTACTAGCAATTCAGCGTTAAAAAGACATGAAATGTGCCATTATCCCAGCTGTCGCGTTTGTATGatgaaatttgaaacaaaaaacgaaCTAATCAAGCATAAAGAAGAACACAAGGATCACTTACCGTTTGTTTGTAAAGATTGTGGAAAACAGTTCTTGAAAAGAAAGCAGCTGATATCACATATGAAGagaCATAATGGTGGTCCTgatgaaaaaaatcatttatgcACGGTTTGTGGTCGTGCATTTACGTTATTGTGCAATTTAGAAACGCATTTTAGAATTCATACGGATGAACGTTCATTTGTTTGTCAGACTTGTGGTAAAACGTTCCTAAGAAAAGGTACGCTAGTCGAGCATATAAAAACGCATACGGGCGAACGCAACTATCCATGTACATATTGTGATAAGAGGTTTTCCAATTCTACAAGACTTAAAGTTCACACTGTAGTGCATACAGgtgaaaaaaatttcaaatgcgaAACTTGCGGGAAAGCTTTTAACCGCAAAAGTACGTTAAGAACGCATAATAAAATTCACACAGGTGAACGGCCACATCGCTGTTCCGTTTGCGGCACAGCGTTTATACAAAGACACGTCCTGATTAGCCATATGAatacacataaataa
- Protein Sequence
- MLVEIASVQTHENDSNSSSNNEANDDKDYKTDSDNDYTDNCTESEKWLDEQSAQKKSRTRDCKICGESFTKTENFAIHMTTHVGSQFQCTICTRYFTSNSALKRHEMCHYPSCRVCMMKFETKNELIKHKEEHKDHLPFVCKDCGKQFLKRKQLISHMKRHNGGPDEKNHLCTVCGRAFTLLCNLETHFRIHTDERSFVCQTCGKTFLRKGTLVEHIKTHTGERNYPCTYCDKRFSNSTRLKVHTVVHTGEKNFKCETCGKAFNRKSTLRTHNKIHTGERPHRCSVCGTAFIQRHVLISHMNTHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530856;
- 90% Identity
- -
- 80% Identity
- -