Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000002.1:17178127-17181635[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5e-05 0.0014 19.5 1.2 1 23 173 196 173 196 0.96

2 12 0.0068 0.19 12.8 0.3 1 23 209 232 209 232 0.97

3 12 9.6e-06 0.00026 21.8 0.1 1 23 257 279 257 279 0.95

4 12 0.0034 0.095 13.8 1.0 1 20 285 304 285 306 0.94

5 12 0.00028 0.0076 17.2 0.8 1 23 493 516 493 516 0.97

6 12 0.003 0.083 13.9 2.7 1 23 529 552 529 552 0.97

7 12 0.0034 0.095 13.8 0.0 1 23 577 599 577 599 0.95

8 12 0.00065 0.018 16.0 1.2 1 23 605 627 605 627 0.97

9 12 0.00033 0.009 17.0 0.8 1 23 634 657 634 657 0.95

10 12 0.24 6.5 8.0 2.3 1 23 663 685 663 685 0.96

11 12 0.00032 0.0089 17.0 3.9 1 23 691 713 691 713 0.97

12 12 8.5e-05 0.0023 18.8 1.9 1 22 719 740 719 743 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5e-05	0.0014	19.5	1.2	1	23	173	196	173	196	0.96
2	12	0.0068	0.19	12.8	0.3	1	23	209	232	209	232	0.97
3	12	9.6e-06	0.00026	21.8	0.1	1	23	257	279	257	279	0.95
4	12	0.0034	0.095	13.8	1.0	1	20	285	304	285	306	0.94
5	12	0.00028	0.0076	17.2	0.8	1	23	493	516	493	516	0.97
6	12	0.003	0.083	13.9	2.7	1	23	529	552	529	552	0.97
7	12	0.0034	0.095	13.8	0.0	1	23	577	599	577	599	0.95
8	12	0.00065	0.018	16.0	1.2	1	23	605	627	605	627	0.97
9	12	0.00033	0.009	17.0	0.8	1	23	634	657	634	657	0.95
10	12	0.24	6.5	8.0	2.3	1	23	663	685	663	685	0.96
11	12	0.00032	0.0089	17.0	3.9	1	23	691	713	691	713	0.97
12	12	8.5e-05	0.0023	18.8	1.9	1	22	719	740	719	743	0.90

Sequence Information

Coding Sequence: ATGCCTGACAAAATATGTGTGAAATGCGCCCGTCAGATTAAACGatactatttatttaaattaaaaattgaaaattcagatCGACTTTTACGGAAACAAATTCCTGTATCGGaatcaaatacaaattttcccGTAACAACTTACGATCATTTTATGGTTAAAAACGATGAGCTTCAGATCAAAGAAGAAAATGATTTCTGTTTTGATAACAACGCTAAAGAATGTTTTAACGAAAATAACAGTTTTATGTCGCAAAGCTGCGTTGTTAAAATCGAATGCAAAGATTCGAGTGAAGATGACAAGCATAGTCCcattgaaaatagtttttccaGTTCGGAGAGTCAGTTAACGACAAAACATTCTATTAAAGAAGAACACAAAGACAGTGGTGAAGCCCCAAAGAATATTATAGTTAATCATAAGAACGAAAGCAAACATAACCCACAGAATGTATTAAAAACACGCCATAATAAGGAAAAACATAATAACCATTTTAGAAAGAAATTTTCAAGTGATTTTAAATGCGACAtttgccaaaaaaaattttcttacgcTCGTTGGCTGACGACGCACGTAAAGAACGAGCATACGAGTTTCGCAGAAGAAAGGAAGGCAAAGAAACAATTCAAATGTGACAAATGTAGAGCCGGTTACTCTGAGGAGGAACTGTTGAAAAAACACATTGAAAAGACACACGTTTGTACAATTTGCAACAAGAGAGTCCAGAGTGTACCTATTCACATGAGAATTCATACAGGAGAACGACCATTTCTGTGTCCCGTTTGCGGAAAAGAGTTCAATCGACAGGGGAGTCTTGATGAACACATGTTACGTCACAGTGGTGTGAAACCATTTGCTTGCAACTCATGTGAAATGACGTTCTTCACAAAATATGATCTTAACAAACATCAGAGCCAAATTAATCAGTATTatctgtttaaattaaaaattgaaaactcaGATCGAGTTTTACGAAAACAAATTCCATTAGTGGAATCAAATCAAGGATTTTCTGCAGCGTCTTATGATCATTTTATGGTTAAAGGCGGCGAACTACAAATCAAGCAGGAAAGTGAGATCTCTCTCGATAATAGCCAAGACTCGGGACGCAATGTTAGAGCTCTTCCAAACGAAGATAAGCCAAATTTATCTCCTAGTGTCAAAGAACCCGTCAACGATGACTACATACCACAAAGTTGCGAGGTGAAAGAGGAATGCAAGGATTCTAGTGAAGATGACACTAAAGATTGTTTAATCGAAAATAATATCATCTCTTCGGAAAATCAAACGGTTGATGAAAACTGCATTAAAGAAGAACTCAAAGATAGTTACGGAGCTTTGGACAGTATAGTTCATCGTTTGAATTCCAGTAGATTGAATGCGTCAGGAAATCAAGAAAAAACTCAAAATCTCGTAAAAAAGCGTCGGAAAAAAGGAAAACACAGTCATACTTTTAGAAAGAAATTTACTAGCGATTTCAAGTGCGAAATTTGTCAAAAGCAGTTTTCTTATGGTCGTTGGCTGGCGACGCATATGAAGAATGAACATACCAGTCTTGCCGAGGAAAGAAAAgcgaagaaaaaatataaatgtaataaatgcaAGGCTAGTTACTGTGAAGAGGAGTTGCTGAAGAAACACATTGAAAAGAAACATATTTGTACAATTTGCAACAAAAGAGTTCAAAGTGTACCGGTTCATGTAAGgaCTCATACAGGAGAGCGACCGTTTTTATGTCCCATATGTGGAAAAGGGTTCAACGTGCAAGCAGGTATCGACGAACACATGTTGCGTCACAAGGGTGTAAAATCTTTTGCTTGTGACACGTGCGAAATGAGTTTCATTACAAAATACGAACTGAAACTTCATTCCAAAAAACATTCcgaaacaaaaattgattttcaatgCGATATATGCGGATCTCTGTTCTCCAGAAAGTATAAATTAAACGCTCATAGAGACGTGAAGCATTTCGGCAAAAAGAAACACGAATGTGAAGTTTGTCACAAAAACTTCTTAACAGGAGGAATGTTGAAGAATCACAAGTTGATACATTCAGGGGAGAAGCCTCACAATTGTACGTTTTGCAATAAAGGATTTACATTAAAAGCAACACTAACGACACATCTCAGAACTCATACGGGTGAAAAACCATATACTTGTAGCACGTGTGGACTGACGTTTAGACAAAGGTCGACATTACGCTCGCACAAAGAAAAGGAAACTCACACGTAG
Protein Sequence: MPDKICVKCARQIKRYYLFKLKIENSDRLLRKQIPVSESNTNFPVTTYDHFMVKNDELQIKEENDFCFDNNAKECFNENNSFMSQSCVVKIECKDSSEDDKHSPIENSFSSSESQLTTKHSIKEEHKDSGEAPKNIIVNHKNESKHNPQNVLKTRHNKEKHNNHFRKKFSSDFKCDICQKKFSYARWLTTHVKNEHTSFAEERKAKKQFKCDKCRAGYSEEELLKKHIEKTHVCTICNKRVQSVPIHMRIHTGERPFLCPVCGKEFNRQGSLDEHMLRHSGVKPFACNSCEMTFFTKYDLNKHQSQINQYYLFKLKIENSDRVLRKQIPLVESNQGFSAASYDHFMVKGGELQIKQESEISLDNSQDSGRNVRALPNEDKPNLSPSVKEPVNDDYIPQSCEVKEECKDSSEDDTKDCLIENNIISSENQTVDENCIKEELKDSYGALDSIVHRLNSSRLNASGNQEKTQNLVKKRRKKGKHSHTFRKKFTSDFKCEICQKQFSYGRWLATHMKNEHTSLAEERKAKKKYKCNKCKASYCEEELLKKHIEKKHICTICNKRVQSVPVHVRTHTGERPFLCPICGKGFNVQAGIDEHMLRHKGVKSFACDTCEMSFITKYELKLHSKKHSETKIDFQCDICGSLFSRKYKLNAHRDVKHFGKKKHECEVCHKNFLTGGMLKNHKLIHSGEKPHNCTFCNKGFTLKATLTTHLRTHTGEKPYTCSTCGLTFRQRSTLRSHKEKETHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -