Vnig009075.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- PRDM13
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000021.1:2465586-2469439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.1e-05 0.002 19.1 5.2 2 23 165 186 164 186 0.95 2 12 7.7e-05 0.0021 19.0 4.8 1 23 194 216 194 216 0.98 3 12 0.0012 0.032 15.2 0.8 1 23 222 244 222 244 0.99 4 12 0.024 0.65 11.1 0.8 2 23 250 271 249 271 0.96 5 12 0.0012 0.033 15.2 2.7 1 23 276 298 276 298 0.95 6 12 0.00014 0.0038 18.1 3.4 1 23 304 327 304 327 0.97 7 12 2.2 62 4.9 0.1 2 12 335 345 334 353 0.86 8 12 0.021 0.58 11.3 3.0 1 23 360 383 360 383 0.94 9 12 0.0037 0.1 13.7 4.6 3 23 394 414 393 414 0.98 10 12 3.2e-05 0.00088 20.2 0.2 3 23 422 442 420 442 0.97 11 12 2.1e-05 0.00057 20.7 0.3 1 23 448 470 448 470 0.98 12 12 1e-05 0.00028 21.7 2.9 1 23 476 498 476 498 0.98
Sequence Information
- Coding Sequence
- atgttaataataaatcaaaatatagcgcttataaaaattttgcacacCTGTACTCGAATTAAGATCGGTTCCGACGACGGCTTGCCTTCGCAACTGTGTAACGACTGTTTTAGCGAAATAGAGAAACTTTACAAATTCAAAAAGAAATGCGAAAAACACGACAAACTGTTACGCAAAATCCTTCAAGAATACGAAGAcaaagaacaaatttcaaacaatacAGAAATATCAGACATCAAAGAAGAAACCTTGCTTCAAAACGATATCGGTAATTATAGTGACTACAGCGATTTATGGAAAGACGACGATTCAAACAGCGACTACCCTACAATTAAAGTCGAGACAGAAATAAATCCACCAATAAAAACAGAGGACAGCACGGACAATTCAGATTCAAAAAAACGACCCACCGAAGATTCCAGCACAAAAAGAATtacttctaaaaaaaattcgttaACGTTTGATCCTGAAAAATGTGACGAAATAGCTTGTACctgcaaaatatgtaataaatcgTTCTATAATTTGCATTCATTAGCCCGACACATGGAACAGCACAACGAAAATCGAAAATTCTCGCATACTTGCAAAGTCTGTAACAAAGGATTTTACGAACTGGGTCACCTCACCACGCACATGCGCAGACATGACGGAAACAAAAGATATAAGTGCGAGTTTTGCAACAAAGGTTTTTACGAGCTCAGCGCCCAAGCCGTTCACATGAAGAAGCACAACGTAGAACCGATGCCTTGCGacaaatgcgacaaaaaattcCTCGTGAAATTACAACTGGAAATTCACAAGAAGACGCACGAAGAATTTAAACATTTCTGTCCGGATTGCGGGAAGGGTTTCGCCGTGTtgtgttctttaaaaaaacattcgataaaacacaaaaaagacAAGCCTTTCATGTGTCAGCAGTGCAACCGGTGCTTCAAACAGGAATTTGCTTTGCGCAAACACGTCAAGGTCATTCATGACGGTATTAAAGAACGTGACGTTTGCAACGTTTGCGGCAAATCGGTCGCTCGAATCAAGTACCATATGCTCGAACATTACGGAGGTGAGAAGAAGTTTAAGTGCAACGAGTGTCCGTTGGCTTTCGATTTAAATTGCCAACTGACTCAGCACGTTTTGCATAAACACCGAGGGGAAAAACCGACTCGCAAAGCGCTCTGCACGATCTGTGGCTTTAAGTGTTACACCCACCGCGATTTGGAAATTCATATGCGAAAGCATACAGgtGAGAAGCCATTGGCTTGTACGATGTGTGAGAAGAAATATAAAACGCCGGCAGCCCTAAGAATTCACGTCCGAACTCACACGAACGAACGACCATACATTTGCAGCGTCTGCGGAAAAGGATTTTATACGAGTACTGTCTTAAAAAACCATGTCAGAATTCATACCGGGGAAAGACCTTTTGTGTGTCAACTGTGCCATCAAGCGTTCACTCAAAAATCGGTACTTCAAACGCATATGAAAACGCATTCCTGA
- Protein Sequence
- MLIINQNIALIKILHTCTRIKIGSDDGLPSQLCNDCFSEIEKLYKFKKKCEKHDKLLRKILQEYEDKEQISNNTEISDIKEETLLQNDIGNYSDYSDLWKDDDSNSDYPTIKVETEINPPIKTEDSTDNSDSKKRPTEDSSTKRITSKKNSLTFDPEKCDEIACTCKICNKSFYNLHSLARHMEQHNENRKFSHTCKVCNKGFYELGHLTTHMRRHDGNKRYKCEFCNKGFYELSAQAVHMKKHNVEPMPCDKCDKKFLVKLQLEIHKKTHEEFKHFCPDCGKGFAVLCSLKKHSIKHKKDKPFMCQQCNRCFKQEFALRKHVKVIHDGIKERDVCNVCGKSVARIKYHMLEHYGGEKKFKCNECPLAFDLNCQLTQHVLHKHRGEKPTRKALCTICGFKCYTHRDLEIHMRKHTGEKPLACTMCEKKYKTPAALRIHVRTHTNERPYICSVCGKGFYTSTVLKNHVRIHTGERPFVCQLCHQAFTQKSVLQTHMKTHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -