Vnig017340.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000070.1:1058995-1065078[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 0.3 12.2 1.6 1 23 117 139 117 139 0.98 2 14 5.5e-05 0.0015 19.4 0.6 1 23 176 198 176 198 0.96 3 14 0.011 0.3 12.2 6.2 3 23 203 224 202 224 0.96 4 14 0.023 0.63 11.2 2.4 2 23 234 256 233 256 0.95 5 14 0.0068 0.19 12.8 0.2 1 23 261 283 261 283 0.98 6 14 0.019 0.52 11.4 5.2 1 23 289 311 289 311 0.98 7 14 0.004 0.11 13.5 0.4 1 23 314 337 314 337 0.94 8 14 0.011 0.31 12.1 4.0 2 23 346 368 345 368 0.95 9 14 0.094 2.6 9.2 3.9 2 21 374 393 373 394 0.92 10 14 0.0011 0.031 15.3 1.1 1 23 404 427 404 427 0.95 11 14 0.00016 0.0044 17.9 4.0 3 23 438 458 436 458 0.95 12 14 0.0034 0.094 13.8 1.8 2 23 466 488 465 488 0.93 13 14 2.9e-07 7.9e-06 26.6 1.8 2 23 495 516 494 516 0.97 14 14 0.00017 0.0046 17.9 3.8 1 23 522 545 522 545 0.97
Sequence Information
- Coding Sequence
- atggCTTTTGAAACCAATATTACGCTTTTAGATATAAAAAGTCAAGTAGGAGGTATGCTGAATgctataaacaatttaaattcatcTGAGCGATCCGAAGCTCTCGAATTTCTTCAGGAATGCCTAATGACTTGCATACAAAATGAGACTCCTCTAAAAATTGACAACAACCTTATCGGTGAACTATCACCAGACAAACAATCAGTAATACCTTTCGAAGAAACATATCAAACAGAATTAAAAGATATGACACAGGATATAATTTGCGACCAATCGTCCAACAGTATTAACACAGGAGACAGAAAGACATCAAAACTCAATCAAGATTTAGAAGCGACGGATTCACCTTTCACATGCTTATTGTGTCCAAAAATTTGCGACAGCAAAGAATCGTTGCTAGAACACTTTAATACACATTCAGGGACGCAAACTCTTTGTGAACAATGCAATGTTCTTTTCTCATGTGAGAAAGCTTACgaatatcatttaaaaacagaaCTCTGCATCAAaacaaacaagaattattttgaaTGTCCAGAATGCTTAAAATCTTTCAACACTCGTCGCAACTTTACAATGCATATAGAAGGTCataaagcaaataattgtaaatattgtAGTGCAAAATTTACGCATAGAAAACATCTATCGAAACATTTACTTAGGGTGCATGATAAAAAGCTTGAAAGCGCATATTTGAAATGTCGCTACTGTGATAAACACTACGTGAAAAAACGAGTATTAAATTTACACATTGCCAGAACACATTCAGATGGAAAGTTTCCTTGCGTTCAGTGCGGAAATGTATTCGATACTAATTTAGAATTCGAAAATCATCGAGAGACTCATACTGAACGAATCTTTTTTGAGTGCAGTCGGTGCAAAGAAAAATTTACGAGGCGACAACAATATCTTATTCATCTAAAGCACCACAACAAGTACAAGTGTACAACGTGCGATGAGAGTTTTGCATCGCAAGAGAAAGCCCTAGAACACAAACGCGATGGACACGTTGTTGAAGGATTGCTGGCCAAGAAGTGTCCGCACTGCGCTAAAGTATTCTACAAACAGTGTTTACTCGAGGCGCATGTAAAACAGAAACATTGTGACCCATTAATCCACTGTAAGCACTGCAGTAAAGTATTCAAAACAACGAAAAGCTATGTACTTCACTTTCGTAAATTATCATCGGATGACCAACGACAGACTTTTATATGCGAGTTGTGTGGCAAACAGTTCAACAAGCGCAACGCGTTCAGGCAGCACGTTTCGAGGATGCACAAACCAGAAGGCAAGGCAGTAGATCACCTATGCAAATTGTGCAATCGCAAGTTCTCTTCAAGAACTAATCTGGAGCGACATCTTCAGCTGCACACTCAAGAAAAAGAAGATTGCGTCTGTGATAAGTGCGGAAAAACGTTCTTATCGCTAAGCAAACTCAAAGATCATATATCCTATGTTCATTCTGAGGTTCAACAGTTAAAATGCAACGAATGTGGCAAACAATTTAAACGTAACAGCGATTTATTAAGACACCAGAGCACACACTCTGAAAAACGTCCATATGCTTGTGATCGGTGTACTCAAACATACAAACGTAAAACACATCTGCAACGCCATCAAATGTCCGTCCATGGAAGTGCACCTCCCGCAAGAAAAGTTCAGCGATTAATTAAAAACGCAAACGGAGACTTGGTCCCGCTGCAGTCGGAACAGAAacctataaagaaaaaatcggGTAAAACGAAAATTAACATCGAAGAGCCTGTCTATTCATTGATGGACGTCAATTCGGGTGAATTGGTGACTTtgactatatcggaaatgcaaGATGTTACCGTTATTTCTAAAACATTACCGTCTGTATTAAATCTTATCGATAGTCAGTATAATGCTGAATTGCTAGAAATGCCGTATCAGGAATTGTGGCCCGATAAAACTGTGCCTCTGCAAGATTATAATATCGGCAGTGCTGATGTACAACAGTCGTTTGAAATGATAAATACGACAGTTGACAATCAAACACAAATAAACAACATGCACTTGGAAATGAATGGTGAACAGGAATCGTTCACTGTTTGCCATTTGtctgaaaattatttgaatCAAACGGCCGGTAATTTAGATAACATTGATACAAGAGATATGATTGTATTGCCTACAGAAGAATTATTAAATACCCAAAACGTAAATGTAGATTTAAAAGTTAATGATGAGAATCTGTCTTTACCAGATTATTTGCAACATCCTTTTCAGTACATTTaa
- Protein Sequence
- MAFETNITLLDIKSQVGGMLNAINNLNSSERSEALEFLQECLMTCIQNETPLKIDNNLIGELSPDKQSVIPFEETYQTELKDMTQDIICDQSSNSINTGDRKTSKLNQDLEATDSPFTCLLCPKICDSKESLLEHFNTHSGTQTLCEQCNVLFSCEKAYEYHLKTELCIKTNKNYFECPECLKSFNTRRNFTMHIEGHKANNCKYCSAKFTHRKHLSKHLLRVHDKKLESAYLKCRYCDKHYVKKRVLNLHIARTHSDGKFPCVQCGNVFDTNLEFENHRETHTERIFFECSRCKEKFTRRQQYLIHLKHHNKYKCTTCDESFASQEKALEHKRDGHVVEGLLAKKCPHCAKVFYKQCLLEAHVKQKHCDPLIHCKHCSKVFKTTKSYVLHFRKLSSDDQRQTFICELCGKQFNKRNAFRQHVSRMHKPEGKAVDHLCKLCNRKFSSRTNLERHLQLHTQEKEDCVCDKCGKTFLSLSKLKDHISYVHSEVQQLKCNECGKQFKRNSDLLRHQSTHSEKRPYACDRCTQTYKRKTHLQRHQMSVHGSAPPARKVQRLIKNANGDLVPLQSEQKPIKKKSGKTKINIEEPVYSLMDVNSGELVTLTISEMQDVTVISKTLPSVLNLIDSQYNAELLEMPYQELWPDKTVPLQDYNIGSADVQQSFEMINTTVDNQTQINNMHLEMNGEQESFTVCHLSENYLNQTAGNLDNIDTRDMIVLPTEELLNTQNVNVDLKVNDENLSLPDYLQHPFQYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531109;
- 90% Identity
- iTF_01531109;
- 80% Identity
- -